Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04175

Experiment: 150_initial_3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS04170 and AMB_RS04175 are separated by 67 nucleotidesAMB_RS04175 and AMB_RS04180 overlap by 4 nucleotides AMB_RS04170: AMB_RS04170 - CoA transferase, at 873,053 to 874,264 _RS04170 AMB_RS04175: AMB_RS04175 - alpha-E domain-containing protein, at 874,332 to 875,303 _RS04175 AMB_RS04180: AMB_RS04180 - circularly permuted type 2 ATP-grasp protein, at 875,300 to 876,775 _RS04180 Position (kb) 874 875 876Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 874.251 kb on - strandat 874.534 kb on + strand, within AMB_RS04175at 874.535 kb on - strand, within AMB_RS04175at 874.535 kb on - strand, within AMB_RS04175at 874.678 kb on + strand, within AMB_RS04175at 874.760 kb on + strand, within AMB_RS04175at 874.760 kb on + strand, within AMB_RS04175at 874.761 kb on - strand, within AMB_RS04175at 874.761 kb on - strand, within AMB_RS04175at 874.761 kb on - strand, within AMB_RS04175at 874.761 kb on - strand, within AMB_RS04175at 874.761 kb on - strand, within AMB_RS04175at 874.765 kb on + strand, within AMB_RS04175at 874.765 kb on + strand, within AMB_RS04175at 874.765 kb on + strand, within AMB_RS04175at 874.765 kb on + strand, within AMB_RS04175at 874.765 kb on + strand, within AMB_RS04175at 874.765 kb on + strand, within AMB_RS04175at 874.766 kb on - strand, within AMB_RS04175at 874.766 kb on - strand, within AMB_RS04175at 874.766 kb on - strand, within AMB_RS04175at 874.766 kb on - strand, within AMB_RS04175at 874.766 kb on - strand, within AMB_RS04175at 874.766 kb on - strand, within AMB_RS04175at 874.766 kb on - strand, within AMB_RS04175at 874.825 kb on + strand, within AMB_RS04175at 874.825 kb on + strand, within AMB_RS04175at 874.825 kb on + strand, within AMB_RS04175at 874.825 kb on + strand, within AMB_RS04175at 874.825 kb on + strand, within AMB_RS04175at 874.825 kb on + strand, within AMB_RS04175at 874.826 kb on - strand, within AMB_RS04175at 874.826 kb on - strand, within AMB_RS04175at 874.826 kb on - strand, within AMB_RS04175at 874.831 kb on + strand, within AMB_RS04175at 874.831 kb on + strand, within AMB_RS04175at 874.831 kb on + strand, within AMB_RS04175at 874.831 kb on + strand, within AMB_RS04175at 874.831 kb on + strand, within AMB_RS04175at 874.832 kb on - strand, within AMB_RS04175at 874.832 kb on - strand, within AMB_RS04175at 874.832 kb on - strand, within AMB_RS04175at 874.832 kb on - strand, within AMB_RS04175at 874.832 kb on - strand, within AMB_RS04175at 874.832 kb on - strand, within AMB_RS04175at 874.849 kb on + strand, within AMB_RS04175at 875.087 kb on - strand, within AMB_RS04175at 875.087 kb on - strand, within AMB_RS04175at 875.087 kb on - strand, within AMB_RS04175at 875.087 kb on - strand, within AMB_RS04175at 875.087 kb on - strand, within AMB_RS04175at 875.251 kb on + strandat 875.251 kb on + strandat 875.251 kb on + strandat 875.251 kb on + strandat 875.251 kb on + strandat 875.251 kb on + strandat 875.252 kb on - strandat 875.252 kb on - strandat 875.252 kb on - strandat 875.252 kb on - strandat 875.330 kb on - strandat 875.470 kb on + strand, within AMB_RS04180at 875.471 kb on - strand, within AMB_RS04180at 875.471 kb on - strand, within AMB_RS04180at 875.526 kb on + strand, within AMB_RS04180at 875.526 kb on + strand, within AMB_RS04180at 875.526 kb on + strand, within AMB_RS04180at 875.526 kb on + strand, within AMB_RS04180at 875.526 kb on + strand, within AMB_RS04180at 875.526 kb on + strand, within AMB_RS04180at 875.526 kb on + strand, within AMB_RS04180at 875.527 kb on - strand, within AMB_RS04180at 875.527 kb on - strand, within AMB_RS04180at 875.527 kb on - strand, within AMB_RS04180at 875.527 kb on - strand, within AMB_RS04180at 875.608 kb on - strand, within AMB_RS04180at 875.664 kb on + strand, within AMB_RS04180at 875.664 kb on + strand, within AMB_RS04180at 875.664 kb on + strand, within AMB_RS04180at 875.664 kb on + strand, within AMB_RS04180at 875.664 kb on + strand, within AMB_RS04180at 875.664 kb on + strand, within AMB_RS04180at 875.665 kb on - strand, within AMB_RS04180at 875.665 kb on - strand, within AMB_RS04180at 875.665 kb on - strand, within AMB_RS04180at 875.665 kb on - strand, within AMB_RS04180at 875.665 kb on - strand, within AMB_RS04180at 875.733 kb on + strand, within AMB_RS04180at 875.733 kb on + strand, within AMB_RS04180at 875.733 kb on + strand, within AMB_RS04180at 875.734 kb on - strand, within AMB_RS04180at 875.736 kb on + strand, within AMB_RS04180at 875.736 kb on + strand, within AMB_RS04180at 875.736 kb on + strand, within AMB_RS04180at 875.737 kb on - strand, within AMB_RS04180at 875.737 kb on - strand, within AMB_RS04180at 875.737 kb on - strand, within AMB_RS04180at 875.757 kb on + strand, within AMB_RS04180at 875.757 kb on + strand, within AMB_RS04180at 875.757 kb on + strand, within AMB_RS04180at 875.757 kb on + strand, within AMB_RS04180at 875.757 kb on + strand, within AMB_RS04180at 875.757 kb on + strand, within AMB_RS04180at 875.757 kb on + strand, within AMB_RS04180at 875.757 kb on + strand, within AMB_RS04180at 875.757 kb on + strand, within AMB_RS04180at 875.758 kb on - strand, within AMB_RS04180at 875.758 kb on - strand, within AMB_RS04180at 875.758 kb on - strand, within AMB_RS04180at 875.758 kb on - strand, within AMB_RS04180at 875.758 kb on - strand, within AMB_RS04180at 875.758 kb on - strand, within AMB_RS04180at 875.758 kb on - strand, within AMB_RS04180at 875.758 kb on - strand, within AMB_RS04180at 875.758 kb on - strand, within AMB_RS04180at 875.763 kb on + strand, within AMB_RS04180at 875.763 kb on + strand, within AMB_RS04180at 875.763 kb on + strand, within AMB_RS04180at 875.763 kb on + strand, within AMB_RS04180at 875.763 kb on + strand, within AMB_RS04180at 875.763 kb on + strand, within AMB_RS04180at 875.764 kb on - strand, within AMB_RS04180at 875.913 kb on + strand, within AMB_RS04180at 875.913 kb on + strand, within AMB_RS04180at 875.913 kb on + strand, within AMB_RS04180at 875.913 kb on + strand, within AMB_RS04180at 875.913 kb on + strand, within AMB_RS04180at 875.913 kb on + strand, within AMB_RS04180at 875.913 kb on + strand, within AMB_RS04180at 875.914 kb on - strand, within AMB_RS04180at 875.914 kb on - strand, within AMB_RS04180at 875.914 kb on - strand, within AMB_RS04180at 875.914 kb on - strand, within AMB_RS04180at 875.914 kb on - strand, within AMB_RS04180at 875.955 kb on + strand, within AMB_RS04180at 875.955 kb on + strand, within AMB_RS04180at 875.955 kb on + strand, within AMB_RS04180at 875.955 kb on + strand, within AMB_RS04180at 875.955 kb on + strand, within AMB_RS04180at 875.956 kb on - strand, within AMB_RS04180at 875.956 kb on - strand, within AMB_RS04180at 875.956 kb on - strand, within AMB_RS04180at 876.051 kb on + strand, within AMB_RS04180at 876.051 kb on + strand, within AMB_RS04180at 876.052 kb on - strand, within AMB_RS04180at 876.052 kb on - strand, within AMB_RS04180at 876.052 kb on - strand, within AMB_RS04180at 876.052 kb on - strand, within AMB_RS04180at 876.138 kb on + strand, within AMB_RS04180at 876.138 kb on + strand, within AMB_RS04180at 876.138 kb on + strand, within AMB_RS04180at 876.219 kb on + strand, within AMB_RS04180at 876.219 kb on + strand, within AMB_RS04180at 876.219 kb on + strand, within AMB_RS04180at 876.219 kb on + strand, within AMB_RS04180at 876.220 kb on - strand, within AMB_RS04180at 876.220 kb on - strand, within AMB_RS04180at 876.220 kb on - strand, within AMB_RS04180at 876.220 kb on - strand, within AMB_RS04180at 876.220 kb on - strand, within AMB_RS04180

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 150_initial_3
remove
874,251 - -1.4
874,534 + AMB_RS04175 0.21 -0.1
874,535 - AMB_RS04175 0.21 -0.4
874,535 - AMB_RS04175 0.21 +0.1
874,678 + AMB_RS04175 0.36 -0.0
874,760 + AMB_RS04175 0.44 +0.2
874,760 + AMB_RS04175 0.44 +0.0
874,761 - AMB_RS04175 0.44 -0.4
874,761 - AMB_RS04175 0.44 -0.7
874,761 - AMB_RS04175 0.44 -2.9
874,761 - AMB_RS04175 0.44 -0.5
874,761 - AMB_RS04175 0.44 -0.4
874,765 + AMB_RS04175 0.45 +0.2
874,765 + AMB_RS04175 0.45 -0.6
874,765 + AMB_RS04175 0.45 -0.7
874,765 + AMB_RS04175 0.45 -0.2
874,765 + AMB_RS04175 0.45 -1.3
874,765 + AMB_RS04175 0.45 -0.0
874,766 - AMB_RS04175 0.45 -0.2
874,766 - AMB_RS04175 0.45 -1.2
874,766 - AMB_RS04175 0.45 +0.1
874,766 - AMB_RS04175 0.45 -0.8
874,766 - AMB_RS04175 0.45 -0.7
874,766 - AMB_RS04175 0.45 +0.4
874,766 - AMB_RS04175 0.45 -0.5
874,825 + AMB_RS04175 0.51 -1.8
874,825 + AMB_RS04175 0.51 -2.2
874,825 + AMB_RS04175 0.51 -1.3
874,825 + AMB_RS04175 0.51 -0.2
874,825 + AMB_RS04175 0.51 -1.3
874,825 + AMB_RS04175 0.51 -0.5
874,826 - AMB_RS04175 0.51 +0.0
874,826 - AMB_RS04175 0.51 -0.5
874,826 - AMB_RS04175 0.51 -0.3
874,831 + AMB_RS04175 0.51 -0.5
874,831 + AMB_RS04175 0.51 -0.4
874,831 + AMB_RS04175 0.51 -0.3
874,831 + AMB_RS04175 0.51 -0.6
874,831 + AMB_RS04175 0.51 -0.8
874,832 - AMB_RS04175 0.51 -0.1
874,832 - AMB_RS04175 0.51 +0.0
874,832 - AMB_RS04175 0.51 -0.1
874,832 - AMB_RS04175 0.51 +0.2
874,832 - AMB_RS04175 0.51 -0.1
874,832 - AMB_RS04175 0.51 +0.2
874,849 + AMB_RS04175 0.53 -0.4
875,087 - AMB_RS04175 0.78 +0.1
875,087 - AMB_RS04175 0.78 +0.2
875,087 - AMB_RS04175 0.78 -0.3
875,087 - AMB_RS04175 0.78 -1.6
875,087 - AMB_RS04175 0.78 +0.5
875,251 + -0.3
875,251 + -0.3
875,251 + -0.8
875,251 + -0.5
875,251 + -0.3
875,251 + -0.5
875,252 - -0.7
875,252 - +1.9
875,252 - +0.5
875,252 - +0.1
875,330 - -1.5
875,470 + AMB_RS04180 0.12 -0.2
875,471 - AMB_RS04180 0.12 +1.0
875,471 - AMB_RS04180 0.12 -0.7
875,526 + AMB_RS04180 0.15 -0.3
875,526 + AMB_RS04180 0.15 -0.1
875,526 + AMB_RS04180 0.15 -1.6
875,526 + AMB_RS04180 0.15 -0.8
875,526 + AMB_RS04180 0.15 -1.2
875,526 + AMB_RS04180 0.15 +0.2
875,526 + AMB_RS04180 0.15 -0.3
875,527 - AMB_RS04180 0.15 -0.2
875,527 - AMB_RS04180 0.15 -0.5
875,527 - AMB_RS04180 0.15 -0.9
875,527 - AMB_RS04180 0.15 -0.8
875,608 - AMB_RS04180 0.21 +1.2
875,664 + AMB_RS04180 0.25 -0.2
875,664 + AMB_RS04180 0.25 -0.2
875,664 + AMB_RS04180 0.25 -0.5
875,664 + AMB_RS04180 0.25 -0.6
875,664 + AMB_RS04180 0.25 -0.2
875,664 + AMB_RS04180 0.25 -1.1
875,665 - AMB_RS04180 0.25 +0.2
875,665 - AMB_RS04180 0.25 -0.6
875,665 - AMB_RS04180 0.25 -0.3
875,665 - AMB_RS04180 0.25 -0.6
875,665 - AMB_RS04180 0.25 -0.3
875,733 + AMB_RS04180 0.29 -0.2
875,733 + AMB_RS04180 0.29 -1.1
875,733 + AMB_RS04180 0.29 -1.3
875,734 - AMB_RS04180 0.29 -0.3
875,736 + AMB_RS04180 0.30 -0.1
875,736 + AMB_RS04180 0.30 -0.4
875,736 + AMB_RS04180 0.30 -0.3
875,737 - AMB_RS04180 0.30 -1.2
875,737 - AMB_RS04180 0.30 -1.8
875,737 - AMB_RS04180 0.30 +0.1
875,757 + AMB_RS04180 0.31 -0.3
875,757 + AMB_RS04180 0.31 -0.3
875,757 + AMB_RS04180 0.31 -0.7
875,757 + AMB_RS04180 0.31 -1.2
875,757 + AMB_RS04180 0.31 -0.4
875,757 + AMB_RS04180 0.31 -1.3
875,757 + AMB_RS04180 0.31 +1.2
875,757 + AMB_RS04180 0.31 -1.9
875,757 + AMB_RS04180 0.31 -3.0
875,758 - AMB_RS04180 0.31 -0.6
875,758 - AMB_RS04180 0.31 +1.1
875,758 - AMB_RS04180 0.31 -0.8
875,758 - AMB_RS04180 0.31 -1.2
875,758 - AMB_RS04180 0.31 +0.0
875,758 - AMB_RS04180 0.31 -0.6
875,758 - AMB_RS04180 0.31 -0.7
875,758 - AMB_RS04180 0.31 +0.3
875,758 - AMB_RS04180 0.31 -0.1
875,763 + AMB_RS04180 0.31 -0.7
875,763 + AMB_RS04180 0.31 -0.8
875,763 + AMB_RS04180 0.31 -0.5
875,763 + AMB_RS04180 0.31 -0.9
875,763 + AMB_RS04180 0.31 -1.8
875,763 + AMB_RS04180 0.31 +0.1
875,764 - AMB_RS04180 0.31 -0.5
875,913 + AMB_RS04180 0.42 +0.4
875,913 + AMB_RS04180 0.42 -0.3
875,913 + AMB_RS04180 0.42 +0.0
875,913 + AMB_RS04180 0.42 -0.1
875,913 + AMB_RS04180 0.42 -1.5
875,913 + AMB_RS04180 0.42 -0.7
875,913 + AMB_RS04180 0.42 +2.0
875,914 - AMB_RS04180 0.42 -1.6
875,914 - AMB_RS04180 0.42 -0.3
875,914 - AMB_RS04180 0.42 -0.3
875,914 - AMB_RS04180 0.42 +0.1
875,914 - AMB_RS04180 0.42 -0.8
875,955 + AMB_RS04180 0.44 -1.7
875,955 + AMB_RS04180 0.44 -0.8
875,955 + AMB_RS04180 0.44 -1.5
875,955 + AMB_RS04180 0.44 -1.3
875,955 + AMB_RS04180 0.44 -0.3
875,956 - AMB_RS04180 0.44 -1.3
875,956 - AMB_RS04180 0.44 -0.4
875,956 - AMB_RS04180 0.44 -0.4
876,051 + AMB_RS04180 0.51 +1.2
876,051 + AMB_RS04180 0.51 -1.9
876,052 - AMB_RS04180 0.51 -0.0
876,052 - AMB_RS04180 0.51 -0.1
876,052 - AMB_RS04180 0.51 -0.1
876,052 - AMB_RS04180 0.51 -0.4
876,138 + AMB_RS04180 0.57 +0.1
876,138 + AMB_RS04180 0.57 -1.0
876,138 + AMB_RS04180 0.57 -0.7
876,219 + AMB_RS04180 0.62 -0.5
876,219 + AMB_RS04180 0.62 -0.3
876,219 + AMB_RS04180 0.62 -0.9
876,219 + AMB_RS04180 0.62 +0.1
876,220 - AMB_RS04180 0.62 -0.3
876,220 - AMB_RS04180 0.62 +1.0
876,220 - AMB_RS04180 0.62 +0.1
876,220 - AMB_RS04180 0.62 -0.3
876,220 - AMB_RS04180 0.62 -0.6

Or see this region's nucleotide sequence