Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03860

Experiment: 150_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03850 and AMB_RS03855 are separated by 66 nucleotidesAMB_RS03855 and AMB_RS03860 are separated by 102 nucleotidesAMB_RS03860 and AMB_RS03865 are separated by 158 nucleotides AMB_RS03850: AMB_RS03850 - cytochrome b561, at 810,729 to 811,418 _RS03850 AMB_RS03855: AMB_RS03855 - cytochrome c, at 811,485 to 811,946 _RS03855 AMB_RS03860: AMB_RS03860 - NADPH:quinone oxidoreductase family protein, at 812,049 to 813,020 _RS03860 AMB_RS03865: AMB_RS03865 - hypothetical protein, at 813,179 to 814,009 _RS03865 Position (kb) 812 813 814Strain fitness (log2 ratio) -2 -1 0 1 2at 811.178 kb on - strand, within AMB_RS03850at 811.225 kb on + strand, within AMB_RS03850at 811.225 kb on + strand, within AMB_RS03850at 811.226 kb on - strand, within AMB_RS03850at 811.226 kb on - strand, within AMB_RS03850at 811.486 kb on + strandat 811.486 kb on - strandat 811.487 kb on - strandat 811.487 kb on - strandat 811.711 kb on + strand, within AMB_RS03855at 811.712 kb on - strand, within AMB_RS03855at 811.781 kb on + strand, within AMB_RS03855at 811.781 kb on + strand, within AMB_RS03855at 811.782 kb on - strand, within AMB_RS03855at 811.782 kb on - strand, within AMB_RS03855at 811.783 kb on + strand, within AMB_RS03855at 811.784 kb on - strand, within AMB_RS03855at 811.840 kb on + strand, within AMB_RS03855at 811.999 kb on - strandat 811.999 kb on - strandat 811.999 kb on - strandat 812.002 kb on - strandat 812.002 kb on - strandat 812.002 kb on - strandat 812.004 kb on - strandat 812.113 kb on - strandat 812.240 kb on - strand, within AMB_RS03860at 812.240 kb on - strand, within AMB_RS03860at 812.240 kb on - strand, within AMB_RS03860at 812.242 kb on + strand, within AMB_RS03860at 812.389 kb on + strand, within AMB_RS03860at 812.389 kb on + strand, within AMB_RS03860at 812.390 kb on - strand, within AMB_RS03860at 812.390 kb on - strand, within AMB_RS03860at 812.455 kb on + strand, within AMB_RS03860at 812.455 kb on + strand, within AMB_RS03860at 812.456 kb on - strand, within AMB_RS03860at 812.616 kb on - strand, within AMB_RS03860at 812.616 kb on - strand, within AMB_RS03860at 812.616 kb on - strand, within AMB_RS03860at 812.656 kb on + strand, within AMB_RS03860at 812.710 kb on + strand, within AMB_RS03860at 812.710 kb on + strand, within AMB_RS03860at 812.710 kb on + strand, within AMB_RS03860at 812.710 kb on + strand, within AMB_RS03860at 812.710 kb on + strand, within AMB_RS03860at 812.710 kb on + strand, within AMB_RS03860at 812.710 kb on + strand, within AMB_RS03860at 812.710 kb on + strand, within AMB_RS03860at 812.710 kb on + strand, within AMB_RS03860at 812.710 kb on + strand, within AMB_RS03860at 812.710 kb on + strand, within AMB_RS03860at 812.710 kb on + strand, within AMB_RS03860at 812.711 kb on - strand, within AMB_RS03860at 812.711 kb on - strand, within AMB_RS03860at 812.711 kb on - strand, within AMB_RS03860at 812.711 kb on - strand, within AMB_RS03860at 812.711 kb on - strand, within AMB_RS03860at 812.711 kb on - strand, within AMB_RS03860at 812.711 kb on - strand, within AMB_RS03860at 812.711 kb on - strand, within AMB_RS03860at 812.711 kb on - strand, within AMB_RS03860at 812.875 kb on + strand, within AMB_RS03860at 812.875 kb on + strand, within AMB_RS03860at 812.876 kb on - strand, within AMB_RS03860at 813.121 kb on + strandat 813.121 kb on + strandat 813.122 kb on - strandat 813.122 kb on - strandat 813.122 kb on - strandat 813.122 kb on - strandat 813.122 kb on - strandat 813.122 kb on - strandat 813.122 kb on - strandat 813.177 kb on + strandat 813.178 kb on - strandat 813.375 kb on + strand, within AMB_RS03865at 813.460 kb on - strand, within AMB_RS03865at 813.732 kb on + strand, within AMB_RS03865at 813.732 kb on + strand, within AMB_RS03865at 813.732 kb on + strand, within AMB_RS03865at 813.733 kb on - strand, within AMB_RS03865at 813.997 kb on - strandat 814.000 kb on + strandat 814.000 kb on + strandat 814.003 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_initial_3
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811,178 - AMB_RS03850 0.65 -0.1
811,225 + AMB_RS03850 0.72 -0.3
811,225 + AMB_RS03850 0.72 -1.8
811,226 - AMB_RS03850 0.72 +1.2
811,226 - AMB_RS03850 0.72 +0.5
811,486 + -1.0
811,486 - +0.6
811,487 - -0.2
811,487 - +0.8
811,711 + AMB_RS03855 0.49 +0.1
811,712 - AMB_RS03855 0.49 +0.8
811,781 + AMB_RS03855 0.64 +0.1
811,781 + AMB_RS03855 0.64 +1.2
811,782 - AMB_RS03855 0.64 +2.6
811,782 - AMB_RS03855 0.64 -1.1
811,783 + AMB_RS03855 0.65 -0.9
811,784 - AMB_RS03855 0.65 +0.3
811,840 + AMB_RS03855 0.77 -0.3
811,999 - -1.1
811,999 - -0.1
811,999 - -0.4
812,002 - +0.6
812,002 - +0.8
812,002 - -0.2
812,004 - +0.3
812,113 - -1.0
812,240 - AMB_RS03860 0.20 +0.2
812,240 - AMB_RS03860 0.20 -0.0
812,240 - AMB_RS03860 0.20 -0.8
812,242 + AMB_RS03860 0.20 +0.2
812,389 + AMB_RS03860 0.35 -0.3
812,389 + AMB_RS03860 0.35 -0.3
812,390 - AMB_RS03860 0.35 -0.2
812,390 - AMB_RS03860 0.35 -2.1
812,455 + AMB_RS03860 0.42 -1.5
812,455 + AMB_RS03860 0.42 -0.2
812,456 - AMB_RS03860 0.42 -0.1
812,616 - AMB_RS03860 0.58 -0.3
812,616 - AMB_RS03860 0.58 -0.2
812,616 - AMB_RS03860 0.58 -0.0
812,656 + AMB_RS03860 0.62 -0.5
812,710 + AMB_RS03860 0.68 +0.1
812,710 + AMB_RS03860 0.68 -0.6
812,710 + AMB_RS03860 0.68 -0.1
812,710 + AMB_RS03860 0.68 +0.4
812,710 + AMB_RS03860 0.68 -0.0
812,710 + AMB_RS03860 0.68 -0.1
812,710 + AMB_RS03860 0.68 -1.0
812,710 + AMB_RS03860 0.68 -0.8
812,710 + AMB_RS03860 0.68 -1.3
812,710 + AMB_RS03860 0.68 -0.2
812,710 + AMB_RS03860 0.68 -0.4
812,710 + AMB_RS03860 0.68 -0.3
812,711 - AMB_RS03860 0.68 -2.7
812,711 - AMB_RS03860 0.68 -0.8
812,711 - AMB_RS03860 0.68 -0.1
812,711 - AMB_RS03860 0.68 -2.3
812,711 - AMB_RS03860 0.68 -0.7
812,711 - AMB_RS03860 0.68 -0.3
812,711 - AMB_RS03860 0.68 +0.3
812,711 - AMB_RS03860 0.68 +0.4
812,711 - AMB_RS03860 0.68 -0.4
812,875 + AMB_RS03860 0.85 +1.0
812,875 + AMB_RS03860 0.85 -1.0
812,876 - AMB_RS03860 0.85 -0.0
813,121 + -0.5
813,121 + +0.4
813,122 - +1.3
813,122 - -1.1
813,122 - -0.1
813,122 - -0.3
813,122 - -0.6
813,122 - -0.4
813,122 - -0.5
813,177 + +0.1
813,178 - +0.3
813,375 + AMB_RS03865 0.24 -0.4
813,460 - AMB_RS03865 0.34 -0.4
813,732 + AMB_RS03865 0.67 -0.1
813,732 + AMB_RS03865 0.67 -0.2
813,732 + AMB_RS03865 0.67 +0.8
813,733 - AMB_RS03865 0.67 -0.2
813,997 - -0.3
814,000 + +0.6
814,000 + -0.7
814,003 + -2.1

Or see this region's nucleotide sequence