Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03650

Experiment: 150_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03645 and AMB_RS03650 are separated by 191 nucleotidesAMB_RS03650 and AMB_RS03655 are separated by 65 nucleotidesAMB_RS03655 and AMB_RS03660 are separated by 134 nucleotides AMB_RS03645: AMB_RS03645 - enoyl-CoA hydratase, at 769,361 to 770,143 _RS03645 AMB_RS03650: AMB_RS03650 - elongation factor G, at 770,335 to 772,362 _RS03650 AMB_RS03655: AMB_RS03655 - hypothetical protein, at 772,428 to 772,700 _RS03655 AMB_RS03660: AMB_RS03660 - pseudaminic acid synthase, at 772,835 to 773,881 _RS03660 Position (kb) 770 771 772 773Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 769.458 kb on + strand, within AMB_RS03645at 769.458 kb on + strand, within AMB_RS03645at 769.459 kb on - strand, within AMB_RS03645at 769.662 kb on + strand, within AMB_RS03645at 769.663 kb on - strand, within AMB_RS03645at 769.701 kb on + strand, within AMB_RS03645at 769.701 kb on + strand, within AMB_RS03645at 769.702 kb on - strand, within AMB_RS03645at 769.702 kb on - strand, within AMB_RS03645at 769.718 kb on - strand, within AMB_RS03645at 769.718 kb on - strand, within AMB_RS03645at 769.718 kb on - strand, within AMB_RS03645at 770.131 kb on + strandat 770.530 kb on - strandat 770.530 kb on - strandat 770.546 kb on - strand, within AMB_RS03650at 770.608 kb on + strand, within AMB_RS03650at 770.608 kb on + strand, within AMB_RS03650at 770.609 kb on - strand, within AMB_RS03650at 770.609 kb on - strand, within AMB_RS03650at 770.611 kb on - strand, within AMB_RS03650at 770.855 kb on - strand, within AMB_RS03650at 770.855 kb on - strand, within AMB_RS03650at 770.855 kb on - strand, within AMB_RS03650at 770.855 kb on - strand, within AMB_RS03650at 770.855 kb on - strand, within AMB_RS03650at 770.857 kb on - strand, within AMB_RS03650at 770.881 kb on + strand, within AMB_RS03650at 770.881 kb on + strand, within AMB_RS03650at 770.882 kb on - strand, within AMB_RS03650at 770.882 kb on - strand, within AMB_RS03650at 770.887 kb on + strand, within AMB_RS03650at 770.888 kb on - strand, within AMB_RS03650at 770.888 kb on - strand, within AMB_RS03650at 771.046 kb on + strand, within AMB_RS03650at 771.046 kb on + strand, within AMB_RS03650at 771.046 kb on + strand, within AMB_RS03650at 771.047 kb on - strand, within AMB_RS03650at 771.047 kb on - strand, within AMB_RS03650at 771.047 kb on - strand, within AMB_RS03650at 771.047 kb on - strand, within AMB_RS03650at 771.047 kb on - strand, within AMB_RS03650at 771.334 kb on + strand, within AMB_RS03650at 771.334 kb on + strand, within AMB_RS03650at 771.334 kb on + strand, within AMB_RS03650at 771.334 kb on + strand, within AMB_RS03650at 771.335 kb on - strand, within AMB_RS03650at 771.335 kb on - strand, within AMB_RS03650at 771.706 kb on + strand, within AMB_RS03650at 771.706 kb on + strand, within AMB_RS03650at 771.706 kb on + strand, within AMB_RS03650at 771.706 kb on + strand, within AMB_RS03650at 771.706 kb on + strand, within AMB_RS03650at 771.707 kb on - strand, within AMB_RS03650at 771.707 kb on - strand, within AMB_RS03650at 771.871 kb on + strand, within AMB_RS03650at 771.871 kb on + strand, within AMB_RS03650at 771.872 kb on - strand, within AMB_RS03650at 771.872 kb on - strand, within AMB_RS03650at 771.970 kb on + strand, within AMB_RS03650at 771.970 kb on + strand, within AMB_RS03650at 771.970 kb on + strand, within AMB_RS03650at 771.970 kb on + strand, within AMB_RS03650at 771.971 kb on - strand, within AMB_RS03650at 771.971 kb on - strand, within AMB_RS03650at 771.971 kb on - strand, within AMB_RS03650at 772.201 kb on + strandat 772.202 kb on - strandat 772.390 kb on + strandat 772.390 kb on + strandat 772.391 kb on - strandat 772.391 kb on - strandat 772.392 kb on + strandat 772.392 kb on + strandat 772.392 kb on + strandat 772.393 kb on - strandat 772.393 kb on - strandat 772.393 kb on - strandat 772.571 kb on + strand, within AMB_RS03655at 772.571 kb on + strand, within AMB_RS03655at 772.571 kb on + strand, within AMB_RS03655at 772.572 kb on - strand, within AMB_RS03655at 772.572 kb on - strand, within AMB_RS03655at 772.572 kb on - strand, within AMB_RS03655at 772.572 kb on - strand, within AMB_RS03655at 772.614 kb on + strand, within AMB_RS03655at 772.614 kb on + strand, within AMB_RS03655at 772.614 kb on + strand, within AMB_RS03655at 772.615 kb on - strand, within AMB_RS03655at 772.630 kb on - strand, within AMB_RS03655at 772.706 kb on + strandat 772.836 kb on + strandat 772.836 kb on + strandat 772.836 kb on + strandat 772.837 kb on - strandat 772.933 kb on - strandat 773.001 kb on + strand, within AMB_RS03660at 773.001 kb on + strand, within AMB_RS03660at 773.001 kb on + strand, within AMB_RS03660at 773.001 kb on + strand, within AMB_RS03660at 773.001 kb on + strand, within AMB_RS03660at 773.001 kb on + strand, within AMB_RS03660at 773.001 kb on + strand, within AMB_RS03660at 773.001 kb on + strand, within AMB_RS03660at 773.001 kb on + strand, within AMB_RS03660at 773.002 kb on - strand, within AMB_RS03660at 773.002 kb on - strand, within AMB_RS03660at 773.002 kb on - strand, within AMB_RS03660at 773.002 kb on - strand, within AMB_RS03660at 773.002 kb on - strand, within AMB_RS03660at 773.002 kb on - strand, within AMB_RS03660at 773.002 kb on - strand, within AMB_RS03660at 773.052 kb on + strand, within AMB_RS03660at 773.052 kb on + strand, within AMB_RS03660at 773.052 kb on + strand, within AMB_RS03660at 773.052 kb on + strand, within AMB_RS03660at 773.053 kb on - strand, within AMB_RS03660at 773.053 kb on - strand, within AMB_RS03660at 773.053 kb on - strand, within AMB_RS03660

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_initial_3
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769,458 + AMB_RS03645 0.12 -0.7
769,458 + AMB_RS03645 0.12 +0.5
769,459 - AMB_RS03645 0.13 -0.2
769,662 + AMB_RS03645 0.38 -0.3
769,663 - AMB_RS03645 0.39 -0.5
769,701 + AMB_RS03645 0.43 -1.0
769,701 + AMB_RS03645 0.43 -0.3
769,702 - AMB_RS03645 0.44 +0.6
769,702 - AMB_RS03645 0.44 -0.6
769,718 - AMB_RS03645 0.46 -0.4
769,718 - AMB_RS03645 0.46 +0.4
769,718 - AMB_RS03645 0.46 -0.5
770,131 + +0.0
770,530 - -0.1
770,530 - -0.4
770,546 - AMB_RS03650 0.10 -0.6
770,608 + AMB_RS03650 0.13 +0.3
770,608 + AMB_RS03650 0.13 +1.3
770,609 - AMB_RS03650 0.14 +0.1
770,609 - AMB_RS03650 0.14 -1.0
770,611 - AMB_RS03650 0.14 +0.3
770,855 - AMB_RS03650 0.26 +0.8
770,855 - AMB_RS03650 0.26 -0.1
770,855 - AMB_RS03650 0.26 -0.1
770,855 - AMB_RS03650 0.26 +0.4
770,855 - AMB_RS03650 0.26 +0.0
770,857 - AMB_RS03650 0.26 +0.1
770,881 + AMB_RS03650 0.27 -2.0
770,881 + AMB_RS03650 0.27 -1.0
770,882 - AMB_RS03650 0.27 +0.3
770,882 - AMB_RS03650 0.27 -0.5
770,887 + AMB_RS03650 0.27 -0.6
770,888 - AMB_RS03650 0.27 +1.7
770,888 - AMB_RS03650 0.27 +0.4
771,046 + AMB_RS03650 0.35 +0.6
771,046 + AMB_RS03650 0.35 -0.1
771,046 + AMB_RS03650 0.35 +0.8
771,047 - AMB_RS03650 0.35 -0.7
771,047 - AMB_RS03650 0.35 -0.5
771,047 - AMB_RS03650 0.35 -3.4
771,047 - AMB_RS03650 0.35 -0.1
771,047 - AMB_RS03650 0.35 +0.1
771,334 + AMB_RS03650 0.49 -0.1
771,334 + AMB_RS03650 0.49 +0.3
771,334 + AMB_RS03650 0.49 -0.8
771,334 + AMB_RS03650 0.49 -0.4
771,335 - AMB_RS03650 0.49 -2.4
771,335 - AMB_RS03650 0.49 -0.4
771,706 + AMB_RS03650 0.68 +0.0
771,706 + AMB_RS03650 0.68 -1.1
771,706 + AMB_RS03650 0.68 +0.4
771,706 + AMB_RS03650 0.68 +1.5
771,706 + AMB_RS03650 0.68 -0.1
771,707 - AMB_RS03650 0.68 -0.8
771,707 - AMB_RS03650 0.68 +0.1
771,871 + AMB_RS03650 0.76 -2.1
771,871 + AMB_RS03650 0.76 +0.1
771,872 - AMB_RS03650 0.76 +0.2
771,872 - AMB_RS03650 0.76 -0.1
771,970 + AMB_RS03650 0.81 +0.1
771,970 + AMB_RS03650 0.81 +0.7
771,970 + AMB_RS03650 0.81 +0.9
771,970 + AMB_RS03650 0.81 +0.4
771,971 - AMB_RS03650 0.81 -0.1
771,971 - AMB_RS03650 0.81 -0.8
771,971 - AMB_RS03650 0.81 -0.5
772,201 + +0.0
772,202 - -0.4
772,390 + +0.6
772,390 + +0.3
772,391 - -0.3
772,391 - -0.5
772,392 + -0.3
772,392 + -2.3
772,392 + +0.6
772,393 - -1.6
772,393 - +0.5
772,393 - -0.3
772,571 + AMB_RS03655 0.52 -2.6
772,571 + AMB_RS03655 0.52 +0.4
772,571 + AMB_RS03655 0.52 -0.1
772,572 - AMB_RS03655 0.53 -2.3
772,572 - AMB_RS03655 0.53 -0.7
772,572 - AMB_RS03655 0.53 -1.3
772,572 - AMB_RS03655 0.53 -0.9
772,614 + AMB_RS03655 0.68 -1.3
772,614 + AMB_RS03655 0.68 +1.3
772,614 + AMB_RS03655 0.68 -0.1
772,615 - AMB_RS03655 0.68 -0.1
772,630 - AMB_RS03655 0.74 -0.7
772,706 + +0.0
772,836 + -0.0
772,836 + -0.2
772,836 + +0.4
772,837 - -0.4
772,933 - -0.5
773,001 + AMB_RS03660 0.16 -0.1
773,001 + AMB_RS03660 0.16 -0.7
773,001 + AMB_RS03660 0.16 -0.1
773,001 + AMB_RS03660 0.16 -0.5
773,001 + AMB_RS03660 0.16 +0.3
773,001 + AMB_RS03660 0.16 -3.8
773,001 + AMB_RS03660 0.16 +0.1
773,001 + AMB_RS03660 0.16 -0.3
773,001 + AMB_RS03660 0.16 +0.3
773,002 - AMB_RS03660 0.16 -0.4
773,002 - AMB_RS03660 0.16 +0.2
773,002 - AMB_RS03660 0.16 -0.1
773,002 - AMB_RS03660 0.16 +0.1
773,002 - AMB_RS03660 0.16 -0.2
773,002 - AMB_RS03660 0.16 +0.5
773,002 - AMB_RS03660 0.16 -0.6
773,052 + AMB_RS03660 0.21 -0.9
773,052 + AMB_RS03660 0.21 +0.1
773,052 + AMB_RS03660 0.21 -0.5
773,052 + AMB_RS03660 0.21 -3.2
773,053 - AMB_RS03660 0.21 -0.7
773,053 - AMB_RS03660 0.21 -0.1
773,053 - AMB_RS03660 0.21 -0.6

Or see this region's nucleotide sequence