Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02630

Experiment: 150_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS02625 and AMB_RS02630 are separated by 66 nucleotidesAMB_RS02630 and AMB_RS02635 are separated by 173 nucleotides AMB_RS02625: AMB_RS02625 - bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ, at 546,435 to 547,667 _RS02625 AMB_RS02630: AMB_RS02630 - parvulin peptidyl-prolyl isomerase, at 547,734 to 548,696 _RS02630 AMB_RS02635: AMB_RS02635 - type I glyceraldehyde-3-phosphate dehydrogenase, at 548,870 to 549,868 _RS02635 Position (kb) 547 548 549Strain fitness (log2 ratio) -2 -1 0 1 2at 547.693 kb on - strandat 547.736 kb on - strandat 547.736 kb on - strandat 548.670 kb on + strandat 548.748 kb on + strandat 548.748 kb on + strandat 548.748 kb on + strandat 548.748 kb on + strandat 548.837 kb on + strandat 548.837 kb on + strandat 548.837 kb on + strandat 548.837 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_initial_3
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547,693 - -0.4
547,736 - +0.1
547,736 - -0.4
548,670 + +0.4
548,748 + -2.4
548,748 + -0.5
548,748 + -0.3
548,748 + +1.8
548,837 + -0.0
548,837 + -0.5
548,837 + -0.1
548,837 + +0.4

Or see this region's nucleotide sequence