Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02185

Experiment: 150_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS02180 and AMB_RS02185 are separated by 159 nucleotidesAMB_RS02185 and AMB_RS02190 are separated by 1 nucleotides AMB_RS02180: AMB_RS02180 - double-strand break repair protein AddB, at 457,198 to 460,125 _RS02180 AMB_RS02185: AMB_RS02185 - C4-dicarboxylate ABC transporter, at 460,285 to 461,313 _RS02185 AMB_RS02190: AMB_RS02190 - C4-dicarboxylate ABC transporter, at 461,315 to 463,270 _RS02190 Position (kb) 460 461 462Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 459.350 kb on - strand, within AMB_RS02180at 459.425 kb on - strand, within AMB_RS02180at 460.124 kb on - strandat 460.165 kb on + strandat 460.165 kb on + strandat 460.165 kb on + strandat 460.165 kb on + strandat 460.165 kb on + strandat 460.166 kb on - strandat 460.166 kb on - strandat 460.166 kb on - strandat 460.166 kb on - strandat 460.166 kb on - strandat 460.166 kb on - strandat 460.166 kb on - strandat 460.216 kb on + strandat 460.217 kb on - strandat 460.507 kb on + strand, within AMB_RS02185at 460.507 kb on + strand, within AMB_RS02185at 460.507 kb on + strand, within AMB_RS02185at 460.507 kb on + strand, within AMB_RS02185at 460.508 kb on - strand, within AMB_RS02185at 460.508 kb on - strand, within AMB_RS02185at 460.508 kb on - strand, within AMB_RS02185at 460.508 kb on - strand, within AMB_RS02185at 460.508 kb on - strand, within AMB_RS02185at 460.508 kb on - strand, within AMB_RS02185at 460.583 kb on - strand, within AMB_RS02185at 460.594 kb on + strand, within AMB_RS02185at 460.654 kb on + strand, within AMB_RS02185at 460.654 kb on + strand, within AMB_RS02185at 460.654 kb on + strand, within AMB_RS02185at 460.654 kb on + strand, within AMB_RS02185at 460.655 kb on - strand, within AMB_RS02185at 460.655 kb on - strand, within AMB_RS02185at 460.655 kb on - strand, within AMB_RS02185at 460.897 kb on + strand, within AMB_RS02185at 460.897 kb on + strand, within AMB_RS02185at 460.897 kb on + strand, within AMB_RS02185at 460.897 kb on + strand, within AMB_RS02185at 460.897 kb on + strand, within AMB_RS02185at 460.897 kb on + strand, within AMB_RS02185at 460.897 kb on + strand, within AMB_RS02185at 460.897 kb on + strand, within AMB_RS02185at 460.898 kb on - strand, within AMB_RS02185at 460.898 kb on - strand, within AMB_RS02185at 460.898 kb on - strand, within AMB_RS02185at 460.898 kb on - strand, within AMB_RS02185at 460.898 kb on - strand, within AMB_RS02185at 460.898 kb on - strand, within AMB_RS02185at 460.898 kb on - strand, within AMB_RS02185at 460.898 kb on - strand, within AMB_RS02185at 460.898 kb on - strand, within AMB_RS02185at 461.164 kb on + strand, within AMB_RS02185at 461.164 kb on + strand, within AMB_RS02185at 461.164 kb on + strand, within AMB_RS02185at 461.165 kb on - strand, within AMB_RS02185at 461.254 kb on + strandat 461.254 kb on + strandat 461.254 kb on + strandat 461.255 kb on - strandat 461.306 kb on + strandat 461.306 kb on + strandat 461.306 kb on + strandat 461.306 kb on + strandat 461.306 kb on + strandat 461.306 kb on + strandat 461.306 kb on + strandat 461.307 kb on - strandat 461.307 kb on - strandat 461.307 kb on - strandat 461.307 kb on - strandat 461.307 kb on - strandat 461.307 kb on - strandat 461.307 kb on - strandat 461.307 kb on - strandat 461.307 kb on - strandat 461.955 kb on - strand, within AMB_RS02190at 462.083 kb on + strand, within AMB_RS02190at 462.084 kb on - strand, within AMB_RS02190at 462.084 kb on - strand, within AMB_RS02190at 462.176 kb on + strand, within AMB_RS02190at 462.176 kb on + strand, within AMB_RS02190at 462.176 kb on + strand, within AMB_RS02190at 462.177 kb on - strand, within AMB_RS02190at 462.177 kb on - strand, within AMB_RS02190at 462.177 kb on - strand, within AMB_RS02190at 462.177 kb on - strand, within AMB_RS02190at 462.232 kb on + strand, within AMB_RS02190at 462.232 kb on + strand, within AMB_RS02190at 462.232 kb on + strand, within AMB_RS02190at 462.232 kb on + strand, within AMB_RS02190at 462.233 kb on - strand, within AMB_RS02190at 462.233 kb on - strand, within AMB_RS02190at 462.233 kb on - strand, within AMB_RS02190at 462.233 kb on - strand, within AMB_RS02190

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_initial_3
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459,350 - AMB_RS02180 0.73 +0.6
459,425 - AMB_RS02180 0.76 -1.3
460,124 - -0.6
460,165 + +0.7
460,165 + -0.3
460,165 + +0.0
460,165 + -1.3
460,165 + +0.1
460,166 - -0.9
460,166 - +0.1
460,166 - +0.3
460,166 - -1.5
460,166 - -0.4
460,166 - +0.6
460,166 - +0.5
460,216 + -0.3
460,217 - -1.0
460,507 + AMB_RS02185 0.22 -1.2
460,507 + AMB_RS02185 0.22 -0.2
460,507 + AMB_RS02185 0.22 +0.1
460,507 + AMB_RS02185 0.22 -0.1
460,508 - AMB_RS02185 0.22 -0.3
460,508 - AMB_RS02185 0.22 -0.3
460,508 - AMB_RS02185 0.22 +0.1
460,508 - AMB_RS02185 0.22 +0.3
460,508 - AMB_RS02185 0.22 -0.5
460,508 - AMB_RS02185 0.22 -1.0
460,583 - AMB_RS02185 0.29 -1.4
460,594 + AMB_RS02185 0.30 +0.3
460,654 + AMB_RS02185 0.36 +0.5
460,654 + AMB_RS02185 0.36 -1.3
460,654 + AMB_RS02185 0.36 -0.8
460,654 + AMB_RS02185 0.36 +1.0
460,655 - AMB_RS02185 0.36 -0.1
460,655 - AMB_RS02185 0.36 -0.0
460,655 - AMB_RS02185 0.36 -0.1
460,897 + AMB_RS02185 0.59 -0.2
460,897 + AMB_RS02185 0.59 +0.4
460,897 + AMB_RS02185 0.59 -0.3
460,897 + AMB_RS02185 0.59 +0.3
460,897 + AMB_RS02185 0.59 -0.1
460,897 + AMB_RS02185 0.59 +1.3
460,897 + AMB_RS02185 0.59 -0.7
460,897 + AMB_RS02185 0.59 -3.5
460,898 - AMB_RS02185 0.60 +0.1
460,898 - AMB_RS02185 0.60 -0.0
460,898 - AMB_RS02185 0.60 -1.5
460,898 - AMB_RS02185 0.60 +0.1
460,898 - AMB_RS02185 0.60 +0.5
460,898 - AMB_RS02185 0.60 -0.3
460,898 - AMB_RS02185 0.60 -0.4
460,898 - AMB_RS02185 0.60 +2.3
460,898 - AMB_RS02185 0.60 -0.5
461,164 + AMB_RS02185 0.85 +0.7
461,164 + AMB_RS02185 0.85 +0.2
461,164 + AMB_RS02185 0.85 -0.5
461,165 - AMB_RS02185 0.86 -1.2
461,254 + -0.2
461,254 + -0.4
461,254 + -0.3
461,255 - -1.2
461,306 + -1.6
461,306 + -0.4
461,306 + +0.4
461,306 + +0.7
461,306 + -1.3
461,306 + +0.4
461,306 + +0.3
461,307 - -0.3
461,307 - +0.3
461,307 - -0.4
461,307 - -0.7
461,307 - +0.2
461,307 - +0.2
461,307 - +0.8
461,307 - +0.1
461,307 - +0.2
461,955 - AMB_RS02190 0.33 -0.6
462,083 + AMB_RS02190 0.39 -0.1
462,084 - AMB_RS02190 0.39 -1.0
462,084 - AMB_RS02190 0.39 +1.8
462,176 + AMB_RS02190 0.44 -1.3
462,176 + AMB_RS02190 0.44 -1.1
462,176 + AMB_RS02190 0.44 -0.2
462,177 - AMB_RS02190 0.44 -0.1
462,177 - AMB_RS02190 0.44 +0.3
462,177 - AMB_RS02190 0.44 -0.2
462,177 - AMB_RS02190 0.44 +1.0
462,232 + AMB_RS02190 0.47 -0.0
462,232 + AMB_RS02190 0.47 +0.3
462,232 + AMB_RS02190 0.47 +2.6
462,232 + AMB_RS02190 0.47 -0.9
462,233 - AMB_RS02190 0.47 -0.6
462,233 - AMB_RS02190 0.47 -0.1
462,233 - AMB_RS02190 0.47 -1.3
462,233 - AMB_RS02190 0.47 +0.9

Or see this region's nucleotide sequence