Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01595

Experiment: 150_initial_3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS01585 and AMB_RS01590 are separated by 15 nucleotidesAMB_RS01590 and AMB_RS01595 overlap by 4 nucleotidesAMB_RS01595 and AMB_RS01600 are separated by 59 nucleotidesAMB_RS01600 and AMB_RS01605 are separated by 168 nucleotides AMB_RS01585: AMB_RS01585 - regulatory protein RecX, at 353,414 to 353,962 _RS01585 AMB_RS01590: AMB_RS01590 - multidrug ABC transporter permease, at 353,978 to 354,790 _RS01590 AMB_RS01595: AMB_RS01595 - XRE family transcriptional regulator, at 354,787 to 355,593 _RS01595 AMB_RS01600: AMB_RS01600 - class I SAM-dependent methyltransferase, at 355,653 to 356,417 _RS01600 AMB_RS01605: AMB_RS01605 - aspartate aminotransferase family protein, at 356,586 to 357,740 _RS01605 Position (kb) 354 355 356Strain fitness (log2 ratio) -2 -1 0 1 2at 353.868 kb on + strand, within AMB_RS01585at 353.868 kb on + strand, within AMB_RS01585at 353.868 kb on + strand, within AMB_RS01585at 353.868 kb on + strand, within AMB_RS01585at 353.880 kb on + strand, within AMB_RS01585at 353.880 kb on + strand, within AMB_RS01585at 353.881 kb on - strand, within AMB_RS01585at 353.881 kb on - strand, within AMB_RS01585at 353.904 kb on + strand, within AMB_RS01585at 353.905 kb on - strand, within AMB_RS01585at 353.905 kb on - strand, within AMB_RS01585at 353.905 kb on - strand, within AMB_RS01585at 353.974 kb on + strandat 353.974 kb on + strandat 353.974 kb on + strandat 353.974 kb on + strandat 353.974 kb on + strandat 353.974 kb on + strandat 353.974 kb on + strandat 353.974 kb on + strandat 353.974 kb on + strandat 353.975 kb on - strandat 353.975 kb on - strandat 353.975 kb on - strandat 353.975 kb on - strandat 353.975 kb on - strandat 354.089 kb on + strand, within AMB_RS01590at 354.090 kb on - strand, within AMB_RS01590at 354.090 kb on - strand, within AMB_RS01590at 354.090 kb on - strand, within AMB_RS01590at 354.216 kb on + strand, within AMB_RS01590at 354.217 kb on - strand, within AMB_RS01590at 354.217 kb on - strand, within AMB_RS01590at 354.253 kb on + strand, within AMB_RS01590at 354.254 kb on - strand, within AMB_RS01590at 354.292 kb on + strand, within AMB_RS01590at 354.292 kb on + strand, within AMB_RS01590at 354.449 kb on + strand, within AMB_RS01590at 354.450 kb on - strand, within AMB_RS01590at 354.584 kb on + strand, within AMB_RS01590at 354.585 kb on - strand, within AMB_RS01590at 354.585 kb on - strand, within AMB_RS01590at 354.585 kb on - strand, within AMB_RS01590at 354.644 kb on + strand, within AMB_RS01590at 354.644 kb on + strand, within AMB_RS01590at 354.644 kb on + strand, within AMB_RS01590at 354.644 kb on + strand, within AMB_RS01590at 354.644 kb on + strand, within AMB_RS01590at 354.645 kb on - strand, within AMB_RS01590at 354.773 kb on + strandat 354.774 kb on - strandat 354.774 kb on - strandat 354.788 kb on + strandat 354.886 kb on + strand, within AMB_RS01595at 354.886 kb on + strand, within AMB_RS01595at 354.887 kb on - strand, within AMB_RS01595at 355.206 kb on - strand, within AMB_RS01595at 355.253 kb on - strand, within AMB_RS01595at 355.253 kb on - strand, within AMB_RS01595at 355.313 kb on + strand, within AMB_RS01595at 355.313 kb on + strand, within AMB_RS01595at 355.314 kb on - strand, within AMB_RS01595at 355.314 kb on - strand, within AMB_RS01595at 355.574 kb on - strandat 355.576 kb on - strandat 355.593 kb on + strandat 355.713 kb on + strandat 355.714 kb on - strandat 355.714 kb on - strandat 355.714 kb on - strandat 355.714 kb on - strandat 355.853 kb on + strand, within AMB_RS01600at 355.854 kb on - strand, within AMB_RS01600at 355.854 kb on - strand, within AMB_RS01600at 355.854 kb on - strand, within AMB_RS01600at 355.866 kb on + strand, within AMB_RS01600at 355.867 kb on - strand, within AMB_RS01600at 355.867 kb on - strand, within AMB_RS01600at 355.867 kb on - strand, within AMB_RS01600at 355.867 kb on - strand, within AMB_RS01600at 355.867 kb on - strand, within AMB_RS01600at 356.007 kb on - strand, within AMB_RS01600at 356.175 kb on + strand, within AMB_RS01600at 356.175 kb on + strand, within AMB_RS01600at 356.175 kb on + strand, within AMB_RS01600at 356.175 kb on + strand, within AMB_RS01600at 356.176 kb on - strand, within AMB_RS01600at 356.176 kb on - strand, within AMB_RS01600at 356.176 kb on - strand, within AMB_RS01600at 356.176 kb on - strand, within AMB_RS01600at 356.492 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 150_initial_3
remove
353,868 + AMB_RS01585 0.83 -0.5
353,868 + AMB_RS01585 0.83 -0.6
353,868 + AMB_RS01585 0.83 -0.5
353,868 + AMB_RS01585 0.83 +0.1
353,880 + AMB_RS01585 0.85 -0.4
353,880 + AMB_RS01585 0.85 +1.0
353,881 - AMB_RS01585 0.85 -1.0
353,881 - AMB_RS01585 0.85 -0.2
353,904 + AMB_RS01585 0.89 -0.4
353,905 - AMB_RS01585 0.89 -0.4
353,905 - AMB_RS01585 0.89 -0.6
353,905 - AMB_RS01585 0.89 -0.5
353,974 + -0.7
353,974 + -0.8
353,974 + +0.0
353,974 + -1.2
353,974 + -0.8
353,974 + +0.1
353,974 + +0.1
353,974 + -1.2
353,974 + -1.3
353,975 - -0.4
353,975 - -1.1
353,975 - +1.0
353,975 - -0.0
353,975 - +0.7
354,089 + AMB_RS01590 0.14 +0.3
354,090 - AMB_RS01590 0.14 -0.5
354,090 - AMB_RS01590 0.14 -0.7
354,090 - AMB_RS01590 0.14 +0.1
354,216 + AMB_RS01590 0.29 +0.9
354,217 - AMB_RS01590 0.29 -0.2
354,217 - AMB_RS01590 0.29 +0.9
354,253 + AMB_RS01590 0.34 -0.5
354,254 - AMB_RS01590 0.34 -0.5
354,292 + AMB_RS01590 0.39 +0.0
354,292 + AMB_RS01590 0.39 +1.9
354,449 + AMB_RS01590 0.58 -0.3
354,450 - AMB_RS01590 0.58 -0.5
354,584 + AMB_RS01590 0.75 +0.8
354,585 - AMB_RS01590 0.75 -0.3
354,585 - AMB_RS01590 0.75 -1.2
354,585 - AMB_RS01590 0.75 -0.2
354,644 + AMB_RS01590 0.82 -0.7
354,644 + AMB_RS01590 0.82 -0.0
354,644 + AMB_RS01590 0.82 -0.9
354,644 + AMB_RS01590 0.82 -0.4
354,644 + AMB_RS01590 0.82 +0.1
354,645 - AMB_RS01590 0.82 -1.0
354,773 + +0.7
354,774 - +0.4
354,774 - -0.3
354,788 + -1.1
354,886 + AMB_RS01595 0.12 -0.3
354,886 + AMB_RS01595 0.12 -0.1
354,887 - AMB_RS01595 0.12 -0.7
355,206 - AMB_RS01595 0.52 -0.6
355,253 - AMB_RS01595 0.58 -0.5
355,253 - AMB_RS01595 0.58 -0.1
355,313 + AMB_RS01595 0.65 -2.3
355,313 + AMB_RS01595 0.65 -0.2
355,314 - AMB_RS01595 0.65 -0.6
355,314 - AMB_RS01595 0.65 -1.8
355,574 - -0.6
355,576 - -0.1
355,593 + +1.0
355,713 + -1.3
355,714 - +0.1
355,714 - -0.4
355,714 - -0.2
355,714 - -0.1
355,853 + AMB_RS01600 0.26 -0.2
355,854 - AMB_RS01600 0.26 -0.7
355,854 - AMB_RS01600 0.26 -1.0
355,854 - AMB_RS01600 0.26 -0.8
355,866 + AMB_RS01600 0.28 -0.0
355,867 - AMB_RS01600 0.28 -0.5
355,867 - AMB_RS01600 0.28 -0.6
355,867 - AMB_RS01600 0.28 +0.0
355,867 - AMB_RS01600 0.28 -0.1
355,867 - AMB_RS01600 0.28 -0.1
356,007 - AMB_RS01600 0.46 -1.5
356,175 + AMB_RS01600 0.68 -1.6
356,175 + AMB_RS01600 0.68 -0.9
356,175 + AMB_RS01600 0.68 -1.1
356,175 + AMB_RS01600 0.68 +0.0
356,176 - AMB_RS01600 0.68 -0.3
356,176 - AMB_RS01600 0.68 -0.9
356,176 - AMB_RS01600 0.68 -0.4
356,176 - AMB_RS01600 0.68 +0.9
356,492 + -2.2

Or see this region's nucleotide sequence