Experiment: 150_initial_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01550 and AMB_RS01555 are separated by 104 nucleotides AMB_RS01555 and AMB_RS01560 are separated by 207 nucleotides AMB_RS01560 and AMB_RS01565 are separated by 74 nucleotides
AMB_RS01550: AMB_RS01550 - hypothetical protein, at 344,452 to 345,450
_RS01550
AMB_RS01555: AMB_RS01555 - hypothetical protein, at 345,555 to 346,148
_RS01555
AMB_RS01560: AMB_RS01560 - acyl-CoA dehydrogenase, at 346,356 to 348,017
_RS01560
AMB_RS01565: AMB_RS01565 - crotonyl-CoA carboxylase/reductase, at 348,092 to 349,348
_RS01565
Position (kb) 346
347
348
349 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 345.446 kb on + strand at 345.446 kb on + strand at 345.446 kb on + strand at 345.446 kb on + strand at 345.446 kb on + strand at 345.446 kb on + strand at 345.447 kb on - strand at 345.447 kb on - strand at 345.447 kb on - strand at 345.447 kb on - strand at 345.481 kb on + strand at 345.481 kb on + strand at 345.481 kb on + strand at 345.481 kb on + strand at 345.481 kb on + strand at 345.481 kb on + strand at 345.482 kb on - strand at 345.482 kb on - strand at 345.482 kb on - strand at 345.482 kb on - strand at 345.482 kb on - strand at 345.556 kb on + strand at 345.556 kb on + strand at 345.556 kb on + strand at 345.556 kb on + strand at 345.556 kb on + strand at 345.782 kb on - strand, within AMB_RS01555 at 345.782 kb on - strand, within AMB_RS01555 at 346.164 kb on + strand at 346.164 kb on + strand at 346.165 kb on - strand at 346.238 kb on + strand at 346.238 kb on + strand at 346.238 kb on + strand at 346.239 kb on - strand at 346.308 kb on - strand at 346.354 kb on + strand at 346.355 kb on - strand at 346.355 kb on - strand at 346.355 kb on - strand at 346.355 kb on - strand at 346.355 kb on - strand at 346.355 kb on - strand at 346.355 kb on - strand at 346.357 kb on + strand at 346.357 kb on + strand at 346.358 kb on - strand at 346.358 kb on - strand at 346.468 kb on + strand at 346.480 kb on + strand at 346.480 kb on + strand at 346.480 kb on + strand at 346.609 kb on + strand, within AMB_RS01560 at 346.610 kb on - strand, within AMB_RS01560 at 346.610 kb on - strand, within AMB_RS01560 at 346.610 kb on - strand, within AMB_RS01560 at 346.681 kb on + strand, within AMB_RS01560 at 346.681 kb on + strand, within AMB_RS01560 at 346.681 kb on + strand, within AMB_RS01560 at 346.681 kb on + strand, within AMB_RS01560 at 346.682 kb on - strand, within AMB_RS01560 at 346.682 kb on - strand, within AMB_RS01560 at 346.682 kb on - strand, within AMB_RS01560 at 346.682 kb on - strand, within AMB_RS01560 at 346.717 kb on + strand, within AMB_RS01560 at 346.717 kb on + strand, within AMB_RS01560 at 346.717 kb on + strand, within AMB_RS01560 at 346.882 kb on + strand, within AMB_RS01560 at 346.882 kb on + strand, within AMB_RS01560 at 346.883 kb on - strand, within AMB_RS01560 at 346.883 kb on - strand, within AMB_RS01560 at 347.095 kb on + strand, within AMB_RS01560 at 347.095 kb on + strand, within AMB_RS01560 at 347.095 kb on + strand, within AMB_RS01560 at 347.095 kb on + strand, within AMB_RS01560 at 347.095 kb on + strand, within AMB_RS01560 at 347.095 kb on + strand, within AMB_RS01560 at 347.095 kb on + strand, within AMB_RS01560 at 347.095 kb on + strand, within AMB_RS01560 at 347.096 kb on - strand, within AMB_RS01560 at 347.096 kb on - strand, within AMB_RS01560 at 347.096 kb on - strand, within AMB_RS01560 at 347.096 kb on - strand, within AMB_RS01560 at 347.096 kb on - strand, within AMB_RS01560 at 347.096 kb on - strand, within AMB_RS01560 at 347.294 kb on + strand, within AMB_RS01560 at 347.296 kb on + strand, within AMB_RS01560 at 347.296 kb on + strand, within AMB_RS01560 at 347.297 kb on - strand, within AMB_RS01560 at 347.297 kb on - strand, within AMB_RS01560 at 347.297 kb on - strand, within AMB_RS01560 at 347.339 kb on + strand, within AMB_RS01560 at 347.339 kb on + strand, within AMB_RS01560 at 347.339 kb on + strand, within AMB_RS01560 at 347.339 kb on + strand, within AMB_RS01560 at 347.339 kb on + strand, within AMB_RS01560 at 347.359 kb on + strand, within AMB_RS01560 at 347.360 kb on - strand, within AMB_RS01560 at 347.713 kb on + strand, within AMB_RS01560 at 347.713 kb on + strand, within AMB_RS01560 at 347.713 kb on + strand, within AMB_RS01560 at 347.713 kb on + strand, within AMB_RS01560 at 347.713 kb on + strand, within AMB_RS01560 at 347.714 kb on - strand, within AMB_RS01560 at 347.714 kb on - strand, within AMB_RS01560 at 347.714 kb on - strand, within AMB_RS01560 at 347.714 kb on - strand, within AMB_RS01560 at 347.728 kb on + strand, within AMB_RS01560 at 347.729 kb on - strand, within AMB_RS01560 at 347.729 kb on - strand, within AMB_RS01560 at 347.833 kb on + strand, within AMB_RS01560 at 347.833 kb on + strand, within AMB_RS01560 at 347.833 kb on + strand, within AMB_RS01560 at 347.833 kb on + strand, within AMB_RS01560 at 347.833 kb on + strand, within AMB_RS01560 at 347.833 kb on + strand, within AMB_RS01560 at 347.833 kb on + strand, within AMB_RS01560 at 347.834 kb on - strand, within AMB_RS01560 at 347.834 kb on - strand, within AMB_RS01560 at 347.834 kb on - strand, within AMB_RS01560 at 347.834 kb on - strand, within AMB_RS01560 at 347.834 kb on - strand, within AMB_RS01560 at 347.834 kb on - strand, within AMB_RS01560 at 347.834 kb on - strand, within AMB_RS01560 at 347.834 kb on - strand, within AMB_RS01560 at 347.834 kb on - strand, within AMB_RS01560 at 347.834 kb on - strand, within AMB_RS01560 at 347.851 kb on + strand at 347.852 kb on - strand at 348.222 kb on + strand, within AMB_RS01565 at 348.222 kb on + strand, within AMB_RS01565 at 348.222 kb on + strand, within AMB_RS01565 at 348.222 kb on + strand, within AMB_RS01565 at 348.222 kb on + strand, within AMB_RS01565 at 348.222 kb on + strand, within AMB_RS01565 at 348.222 kb on + strand, within AMB_RS01565 at 348.223 kb on - strand, within AMB_RS01565 at 348.223 kb on - strand, within AMB_RS01565 at 348.223 kb on - strand, within AMB_RS01565 at 348.223 kb on - strand, within AMB_RS01565 at 348.223 kb on - strand, within AMB_RS01565 at 348.223 kb on - strand, within AMB_RS01565 at 348.223 kb on - strand, within AMB_RS01565 at 348.223 kb on - strand, within AMB_RS01565 at 348.223 kb on - strand, within AMB_RS01565 at 348.223 kb on - strand, within AMB_RS01565 at 348.223 kb on - strand, within AMB_RS01565 at 348.315 kb on + strand, within AMB_RS01565 at 348.317 kb on - strand, within AMB_RS01565 at 348.363 kb on + strand, within AMB_RS01565 at 348.528 kb on + strand, within AMB_RS01565 at 348.528 kb on + strand, within AMB_RS01565 at 348.528 kb on + strand, within AMB_RS01565 at 348.529 kb on - strand, within AMB_RS01565 at 348.529 kb on - strand, within AMB_RS01565 at 348.529 kb on - strand, within AMB_RS01565 at 348.813 kb on + strand, within AMB_RS01565
Per-strain Table
Position Strand Gene LocusTag Fraction 150_initial_3 remove 345,446 + +2.3 345,446 + -0.1 345,446 + -0.8 345,446 + -0.4 345,446 + +0.5 345,446 + -0.2 345,447 - -0.7 345,447 - -0.8 345,447 - -0.2 345,447 - -2.9 345,481 + -0.4 345,481 + -0.1 345,481 + -0.1 345,481 + +0.6 345,481 + +2.1 345,481 + +0.3 345,482 - +0.3 345,482 - -0.9 345,482 - -0.3 345,482 - -0.1 345,482 - -0.4 345,556 + -0.5 345,556 + -0.3 345,556 + -0.5 345,556 + -0.3 345,556 + +0.0 345,782 - AMB_RS01555 0.38 +0.1 345,782 - AMB_RS01555 0.38 -0.1 346,164 + -0.3 346,164 + -0.0 346,165 - -0.3 346,238 + -0.7 346,238 + -1.5 346,238 + -0.6 346,239 - -0.2 346,308 - -1.5 346,354 + +0.1 346,355 - -1.3 346,355 - -0.1 346,355 - -0.3 346,355 - -0.2 346,355 - -0.2 346,355 - +0.1 346,355 - -0.9 346,357 + -0.8 346,357 + -1.7 346,358 - -0.4 346,358 - -0.9 346,468 + +0.5 346,480 + -0.5 346,480 + -0.7 346,480 + -0.2 346,609 + AMB_RS01560 0.15 +0.3 346,610 - AMB_RS01560 0.15 -2.6 346,610 - AMB_RS01560 0.15 -1.0 346,610 - AMB_RS01560 0.15 -0.9 346,681 + AMB_RS01560 0.20 -2.5 346,681 + AMB_RS01560 0.20 +0.3 346,681 + AMB_RS01560 0.20 -0.6 346,681 + AMB_RS01560 0.20 +0.5 346,682 - AMB_RS01560 0.20 -0.4 346,682 - AMB_RS01560 0.20 -0.3 346,682 - AMB_RS01560 0.20 +0.7 346,682 - AMB_RS01560 0.20 -0.1 346,717 + AMB_RS01560 0.22 +0.3 346,717 + AMB_RS01560 0.22 -0.2 346,717 + AMB_RS01560 0.22 -0.2 346,882 + AMB_RS01560 0.32 -0.3 346,882 + AMB_RS01560 0.32 -0.9 346,883 - AMB_RS01560 0.32 +0.4 346,883 - AMB_RS01560 0.32 +2.6 347,095 + AMB_RS01560 0.44 -1.1 347,095 + AMB_RS01560 0.44 -0.7 347,095 + AMB_RS01560 0.44 +0.1 347,095 + AMB_RS01560 0.44 -0.2 347,095 + AMB_RS01560 0.44 -0.3 347,095 + AMB_RS01560 0.44 +0.3 347,095 + AMB_RS01560 0.44 -1.2 347,095 + AMB_RS01560 0.44 +0.5 347,096 - AMB_RS01560 0.45 -0.4 347,096 - AMB_RS01560 0.45 +0.2 347,096 - AMB_RS01560 0.45 -0.7 347,096 - AMB_RS01560 0.45 -0.2 347,096 - AMB_RS01560 0.45 -1.7 347,096 - AMB_RS01560 0.45 -0.5 347,294 + AMB_RS01560 0.56 -0.3 347,296 + AMB_RS01560 0.57 +1.1 347,296 + AMB_RS01560 0.57 -0.9 347,297 - AMB_RS01560 0.57 -0.6 347,297 - AMB_RS01560 0.57 +0.0 347,297 - AMB_RS01560 0.57 -1.3 347,339 + AMB_RS01560 0.59 +0.3 347,339 + AMB_RS01560 0.59 +0.7 347,339 + AMB_RS01560 0.59 -0.4 347,339 + AMB_RS01560 0.59 -0.8 347,339 + AMB_RS01560 0.59 -0.4 347,359 + AMB_RS01560 0.60 -0.5 347,360 - AMB_RS01560 0.60 -0.4 347,713 + AMB_RS01560 0.82 +0.1 347,713 + AMB_RS01560 0.82 -0.2 347,713 + AMB_RS01560 0.82 -0.9 347,713 + AMB_RS01560 0.82 -0.6 347,713 + AMB_RS01560 0.82 -0.6 347,714 - AMB_RS01560 0.82 +0.3 347,714 - AMB_RS01560 0.82 +0.2 347,714 - AMB_RS01560 0.82 -0.4 347,714 - AMB_RS01560 0.82 -0.2 347,728 + AMB_RS01560 0.83 -0.3 347,729 - AMB_RS01560 0.83 -1.0 347,729 - AMB_RS01560 0.83 +0.3 347,833 + AMB_RS01560 0.89 -0.1 347,833 + AMB_RS01560 0.89 +0.3 347,833 + AMB_RS01560 0.89 -0.2 347,833 + AMB_RS01560 0.89 -1.0 347,833 + AMB_RS01560 0.89 +1.4 347,833 + AMB_RS01560 0.89 -0.9 347,833 + AMB_RS01560 0.89 -0.1 347,834 - AMB_RS01560 0.89 +0.0 347,834 - AMB_RS01560 0.89 -1.3 347,834 - AMB_RS01560 0.89 -0.8 347,834 - AMB_RS01560 0.89 -0.1 347,834 - AMB_RS01560 0.89 +0.2 347,834 - AMB_RS01560 0.89 +0.4 347,834 - AMB_RS01560 0.89 -0.7 347,834 - AMB_RS01560 0.89 +0.4 347,834 - AMB_RS01560 0.89 -1.1 347,834 - AMB_RS01560 0.89 +0.4 347,851 + -0.5 347,852 - +0.6 348,222 + AMB_RS01565 0.10 +0.4 348,222 + AMB_RS01565 0.10 -0.1 348,222 + AMB_RS01565 0.10 +0.3 348,222 + AMB_RS01565 0.10 +0.8 348,222 + AMB_RS01565 0.10 -0.2 348,222 + AMB_RS01565 0.10 -0.0 348,222 + AMB_RS01565 0.10 +0.3 348,223 - AMB_RS01565 0.10 -0.7 348,223 - AMB_RS01565 0.10 +0.2 348,223 - AMB_RS01565 0.10 -0.4 348,223 - AMB_RS01565 0.10 +0.4 348,223 - AMB_RS01565 0.10 -1.3 348,223 - AMB_RS01565 0.10 -0.6 348,223 - AMB_RS01565 0.10 +1.1 348,223 - AMB_RS01565 0.10 +0.1 348,223 - AMB_RS01565 0.10 -0.2 348,223 - AMB_RS01565 0.10 -0.2 348,223 - AMB_RS01565 0.10 +0.0 348,315 + AMB_RS01565 0.18 -0.1 348,317 - AMB_RS01565 0.18 +0.3 348,363 + AMB_RS01565 0.22 +0.8 348,528 + AMB_RS01565 0.35 -3.3 348,528 + AMB_RS01565 0.35 -0.2 348,528 + AMB_RS01565 0.35 -0.4 348,529 - AMB_RS01565 0.35 +0.4 348,529 - AMB_RS01565 0.35 -0.8 348,529 - AMB_RS01565 0.35 +0.3 348,813 + AMB_RS01565 0.57 -0.4
Or see this region's nucleotide sequence