Experiment: 150_initial_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01395 and AMB_RS01400 overlap by 4 nucleotides AMB_RS01400 and AMB_RS01405 overlap by 4 nucleotides AMB_RS01405 and AMB_RS01410 overlap by 4 nucleotides
AMB_RS01395: AMB_RS01395 - energy-coupling factor ABC transporter permease, at 307,255 to 307,905
_RS01395
AMB_RS01400: AMB_RS01400 - energy-coupling factor ABC transporter substrate-binding protein, at 307,902 to 308,174
_RS01400
AMB_RS01405: AMB_RS01405 - cobalt ECF transporter T component CbiQ, at 308,171 to 308,905
_RS01405
AMB_RS01410: AMB_RS01410 - cobalt ABC transporter, at 308,902 to 309,696
_RS01410
Position (kb) 307
308
309 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 306.942 kb on + strand at 306.942 kb on + strand at 306.943 kb on - strand at 306.944 kb on + strand at 306.945 kb on - strand at 307.051 kb on + strand at 307.052 kb on - strand at 307.109 kb on + strand at 307.226 kb on - strand at 307.226 kb on - strand at 307.251 kb on + strand at 307.251 kb on + strand at 307.252 kb on - strand at 307.252 kb on - strand at 307.252 kb on - strand at 307.260 kb on + strand at 307.260 kb on + strand at 307.260 kb on + strand at 307.260 kb on + strand at 307.260 kb on + strand at 307.260 kb on + strand at 307.261 kb on - strand at 307.261 kb on - strand at 307.261 kb on - strand at 307.386 kb on + strand, within AMB_RS01395 at 307.624 kb on + strand, within AMB_RS01395 at 307.624 kb on + strand, within AMB_RS01395 at 307.625 kb on - strand, within AMB_RS01395 at 307.625 kb on - strand, within AMB_RS01395 at 307.711 kb on + strand, within AMB_RS01395 at 307.711 kb on + strand, within AMB_RS01395 at 307.711 kb on + strand, within AMB_RS01395 at 307.711 kb on + strand, within AMB_RS01395 at 307.711 kb on + strand, within AMB_RS01395 at 307.711 kb on + strand, within AMB_RS01395 at 307.711 kb on + strand, within AMB_RS01395 at 307.712 kb on - strand, within AMB_RS01395 at 307.712 kb on - strand, within AMB_RS01395 at 307.712 kb on - strand, within AMB_RS01395 at 307.712 kb on - strand, within AMB_RS01395 at 307.712 kb on - strand, within AMB_RS01395 at 307.712 kb on - strand, within AMB_RS01395 at 307.712 kb on - strand, within AMB_RS01395 at 307.712 kb on - strand, within AMB_RS01395 at 308.041 kb on - strand, within AMB_RS01400 at 308.083 kb on + strand, within AMB_RS01400 at 308.083 kb on + strand, within AMB_RS01400 at 308.083 kb on + strand, within AMB_RS01400 at 308.084 kb on - strand, within AMB_RS01400 at 308.084 kb on - strand, within AMB_RS01400 at 308.084 kb on - strand, within AMB_RS01400 at 308.084 kb on - strand, within AMB_RS01400 at 308.084 kb on - strand, within AMB_RS01400 at 308.887 kb on - strand at 308.887 kb on - strand at 308.929 kb on + strand at 308.929 kb on + strand at 308.929 kb on + strand at 308.930 kb on - strand at 308.930 kb on - strand at 308.930 kb on - strand at 308.935 kb on + strand at 309.106 kb on + strand, within AMB_RS01410 at 309.107 kb on - strand, within AMB_RS01410
Per-strain Table
Position Strand Gene LocusTag Fraction 150_initial_3 remove 306,942 + -2.0 306,942 + +0.3 306,943 - +0.1 306,944 + -0.1 306,945 - -1.1 307,051 + +0.6 307,052 - -0.1 307,109 + -0.4 307,226 - -2.3 307,226 - -1.4 307,251 + +0.4 307,251 + -0.1 307,252 - -0.9 307,252 - +0.4 307,252 - -0.1 307,260 + +0.1 307,260 + +0.2 307,260 + +0.5 307,260 + +0.6 307,260 + +0.5 307,260 + -0.1 307,261 - -1.7 307,261 - +0.1 307,261 - +0.3 307,386 + AMB_RS01395 0.20 -0.2 307,624 + AMB_RS01395 0.57 -0.2 307,624 + AMB_RS01395 0.57 +0.1 307,625 - AMB_RS01395 0.57 +0.1 307,625 - AMB_RS01395 0.57 -0.0 307,711 + AMB_RS01395 0.70 -0.1 307,711 + AMB_RS01395 0.70 -0.7 307,711 + AMB_RS01395 0.70 -0.1 307,711 + AMB_RS01395 0.70 +0.1 307,711 + AMB_RS01395 0.70 -0.0 307,711 + AMB_RS01395 0.70 -3.9 307,711 + AMB_RS01395 0.70 +1.3 307,712 - AMB_RS01395 0.70 -0.4 307,712 - AMB_RS01395 0.70 -1.5 307,712 - AMB_RS01395 0.70 +0.8 307,712 - AMB_RS01395 0.70 -0.3 307,712 - AMB_RS01395 0.70 -0.2 307,712 - AMB_RS01395 0.70 -1.3 307,712 - AMB_RS01395 0.70 -0.6 307,712 - AMB_RS01395 0.70 -0.1 308,041 - AMB_RS01400 0.51 +0.3 308,083 + AMB_RS01400 0.66 +0.0 308,083 + AMB_RS01400 0.66 -0.7 308,083 + AMB_RS01400 0.66 -0.1 308,084 - AMB_RS01400 0.67 -0.7 308,084 - AMB_RS01400 0.67 -0.7 308,084 - AMB_RS01400 0.67 -0.9 308,084 - AMB_RS01400 0.67 +0.4 308,084 - AMB_RS01400 0.67 -0.3 308,887 - -0.7 308,887 - +0.9 308,929 + -1.1 308,929 + -1.9 308,929 + +0.3 308,930 - -0.4 308,930 - +1.2 308,930 - -0.0 308,935 + -0.3 309,106 + AMB_RS01410 0.26 +0.1 309,107 - AMB_RS01410 0.26 +0.2
Or see this region's nucleotide sequence