Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00925

Experiment: 150_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00915 and AMB_RS00920 are separated by 40 nucleotidesAMB_RS00920 and AMB_RS00925 overlap by 4 nucleotidesAMB_RS00925 and AMB_RS00930 overlap by 4 nucleotides AMB_RS00915: AMB_RS00915 - indolepyruvate oxidoreductase subunit B, at 207,338 to 208,846 _RS00915 AMB_RS00920: AMB_RS00920 - secretion protein HlyD, at 208,887 to 209,828 _RS00920 AMB_RS00925: AMB_RS00925 - ABC transporter ATP-binding protein, at 209,825 to 210,751 _RS00925 AMB_RS00930: AMB_RS00930 - ABC transporter permease, at 210,748 to 211,890 _RS00930 Position (kb) 209 210 211Strain fitness (log2 ratio) -3 -2 -1 0 1at 208.959 kb on + strandat 208.960 kb on - strandat 208.960 kb on - strandat 208.974 kb on + strandat 208.974 kb on + strandat 208.975 kb on - strandat 208.975 kb on - strandat 208.975 kb on - strandat 208.975 kb on - strandat 208.975 kb on - strandat 208.975 kb on - strandat 209.269 kb on - strand, within AMB_RS00920at 209.269 kb on - strand, within AMB_RS00920at 209.269 kb on - strand, within AMB_RS00920at 209.269 kb on - strand, within AMB_RS00920at 209.269 kb on - strand, within AMB_RS00920at 209.499 kb on + strand, within AMB_RS00920at 209.499 kb on + strand, within AMB_RS00920at 209.499 kb on + strand, within AMB_RS00920at 209.500 kb on - strand, within AMB_RS00920at 209.631 kb on + strand, within AMB_RS00920at 209.631 kb on + strand, within AMB_RS00920at 209.694 kb on + strand, within AMB_RS00920at 209.695 kb on - strand, within AMB_RS00920at 209.712 kb on + strand, within AMB_RS00920at 209.712 kb on + strand, within AMB_RS00920at 209.712 kb on + strand, within AMB_RS00920at 209.712 kb on + strand, within AMB_RS00920at 209.713 kb on - strand, within AMB_RS00920at 209.713 kb on - strand, within AMB_RS00920at 209.786 kb on + strandat 209.786 kb on + strandat 209.787 kb on - strandat 210.071 kb on + strand, within AMB_RS00925at 210.072 kb on - strand, within AMB_RS00925at 210.072 kb on - strand, within AMB_RS00925at 210.072 kb on - strand, within AMB_RS00925at 210.072 kb on - strand, within AMB_RS00925at 210.072 kb on - strand, within AMB_RS00925at 210.095 kb on + strand, within AMB_RS00925at 210.095 kb on + strand, within AMB_RS00925at 210.096 kb on - strand, within AMB_RS00925at 210.143 kb on + strand, within AMB_RS00925at 210.144 kb on - strand, within AMB_RS00925at 210.404 kb on + strand, within AMB_RS00925at 210.404 kb on + strand, within AMB_RS00925at 210.404 kb on + strand, within AMB_RS00925at 210.404 kb on + strand, within AMB_RS00925at 210.404 kb on + strand, within AMB_RS00925at 210.404 kb on + strand, within AMB_RS00925at 210.404 kb on + strand, within AMB_RS00925at 210.404 kb on + strand, within AMB_RS00925at 210.405 kb on - strand, within AMB_RS00925at 210.405 kb on - strand, within AMB_RS00925at 210.405 kb on - strand, within AMB_RS00925at 210.405 kb on - strand, within AMB_RS00925at 210.405 kb on - strand, within AMB_RS00925at 210.405 kb on - strand, within AMB_RS00925at 210.405 kb on - strand, within AMB_RS00925at 210.440 kb on + strand, within AMB_RS00925at 210.440 kb on + strand, within AMB_RS00925at 210.440 kb on + strand, within AMB_RS00925at 210.440 kb on + strand, within AMB_RS00925at 210.441 kb on - strand, within AMB_RS00925at 210.450 kb on - strand, within AMB_RS00925at 210.883 kb on + strand, within AMB_RS00930at 211.276 kb on + strand, within AMB_RS00930at 211.276 kb on + strand, within AMB_RS00930at 211.300 kb on + strand, within AMB_RS00930at 211.300 kb on + strand, within AMB_RS00930at 211.300 kb on + strand, within AMB_RS00930at 211.301 kb on - strand, within AMB_RS00930at 211.301 kb on - strand, within AMB_RS00930at 211.301 kb on - strand, within AMB_RS00930at 211.459 kb on + strand, within AMB_RS00930at 211.459 kb on + strand, within AMB_RS00930at 211.459 kb on + strand, within AMB_RS00930at 211.459 kb on + strand, within AMB_RS00930at 211.460 kb on - strand, within AMB_RS00930at 211.460 kb on - strand, within AMB_RS00930at 211.460 kb on - strand, within AMB_RS00930at 211.460 kb on - strand, within AMB_RS00930at 211.460 kb on - strand, within AMB_RS00930at 211.460 kb on - strand, within AMB_RS00930at 211.460 kb on - strand, within AMB_RS00930at 211.461 kb on + strand, within AMB_RS00930at 211.474 kb on + strand, within AMB_RS00930at 211.474 kb on + strand, within AMB_RS00930at 211.475 kb on - strand, within AMB_RS00930at 211.475 kb on - strand, within AMB_RS00930at 211.475 kb on - strand, within AMB_RS00930

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_initial_3
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208,959 + -1.4
208,960 - -0.2
208,960 - -3.1
208,974 + -0.1
208,974 + -0.7
208,975 - +0.3
208,975 - +0.1
208,975 - -0.2
208,975 - +0.2
208,975 - +0.3
208,975 - +0.3
209,269 - AMB_RS00920 0.41 -1.9
209,269 - AMB_RS00920 0.41 -1.0
209,269 - AMB_RS00920 0.41 -0.7
209,269 - AMB_RS00920 0.41 +0.0
209,269 - AMB_RS00920 0.41 +0.3
209,499 + AMB_RS00920 0.65 -0.3
209,499 + AMB_RS00920 0.65 -0.4
209,499 + AMB_RS00920 0.65 -0.2
209,500 - AMB_RS00920 0.65 +0.3
209,631 + AMB_RS00920 0.79 +0.3
209,631 + AMB_RS00920 0.79 +0.4
209,694 + AMB_RS00920 0.86 -0.2
209,695 - AMB_RS00920 0.86 -2.0
209,712 + AMB_RS00920 0.88 -0.3
209,712 + AMB_RS00920 0.88 -0.3
209,712 + AMB_RS00920 0.88 -0.8
209,712 + AMB_RS00920 0.88 -0.7
209,713 - AMB_RS00920 0.88 -1.0
209,713 - AMB_RS00920 0.88 -0.6
209,786 + -0.0
209,786 + +0.8
209,787 - +0.1
210,071 + AMB_RS00925 0.27 -1.4
210,072 - AMB_RS00925 0.27 -0.4
210,072 - AMB_RS00925 0.27 -0.6
210,072 - AMB_RS00925 0.27 +0.3
210,072 - AMB_RS00925 0.27 +0.0
210,072 - AMB_RS00925 0.27 +0.6
210,095 + AMB_RS00925 0.29 -0.0
210,095 + AMB_RS00925 0.29 +0.5
210,096 - AMB_RS00925 0.29 -0.7
210,143 + AMB_RS00925 0.34 -0.2
210,144 - AMB_RS00925 0.34 -1.1
210,404 + AMB_RS00925 0.62 -0.3
210,404 + AMB_RS00925 0.62 -0.4
210,404 + AMB_RS00925 0.62 -0.3
210,404 + AMB_RS00925 0.62 -0.7
210,404 + AMB_RS00925 0.62 -0.7
210,404 + AMB_RS00925 0.62 -0.7
210,404 + AMB_RS00925 0.62 +0.1
210,404 + AMB_RS00925 0.62 -1.0
210,405 - AMB_RS00925 0.63 -1.5
210,405 - AMB_RS00925 0.63 +0.4
210,405 - AMB_RS00925 0.63 +0.1
210,405 - AMB_RS00925 0.63 -0.4
210,405 - AMB_RS00925 0.63 -0.0
210,405 - AMB_RS00925 0.63 +0.0
210,405 - AMB_RS00925 0.63 -1.1
210,440 + AMB_RS00925 0.66 -0.2
210,440 + AMB_RS00925 0.66 -0.9
210,440 + AMB_RS00925 0.66 +0.0
210,440 + AMB_RS00925 0.66 +0.3
210,441 - AMB_RS00925 0.66 -0.9
210,450 - AMB_RS00925 0.67 +0.2
210,883 + AMB_RS00930 0.12 -1.3
211,276 + AMB_RS00930 0.46 +0.1
211,276 + AMB_RS00930 0.46 -0.2
211,300 + AMB_RS00930 0.48 +0.1
211,300 + AMB_RS00930 0.48 +0.3
211,300 + AMB_RS00930 0.48 -0.2
211,301 - AMB_RS00930 0.48 -1.0
211,301 - AMB_RS00930 0.48 +0.5
211,301 - AMB_RS00930 0.48 -0.8
211,459 + AMB_RS00930 0.62 -0.9
211,459 + AMB_RS00930 0.62 -0.6
211,459 + AMB_RS00930 0.62 -0.1
211,459 + AMB_RS00930 0.62 -0.5
211,460 - AMB_RS00930 0.62 -0.3
211,460 - AMB_RS00930 0.62 -0.4
211,460 - AMB_RS00930 0.62 -0.3
211,460 - AMB_RS00930 0.62 -0.2
211,460 - AMB_RS00930 0.62 +0.0
211,460 - AMB_RS00930 0.62 +0.7
211,460 - AMB_RS00930 0.62 +0.3
211,461 + AMB_RS00930 0.62 -1.3
211,474 + AMB_RS00930 0.64 -0.0
211,474 + AMB_RS00930 0.64 -0.1
211,475 - AMB_RS00930 0.64 -2.3
211,475 - AMB_RS00930 0.64 -0.9
211,475 - AMB_RS00930 0.64 -0.9

Or see this region's nucleotide sequence