Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00635

Experiment: 150_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00625 and AMB_RS00630 overlap by 1 nucleotidesAMB_RS00630 and AMB_RS00635 are separated by 81 nucleotidesAMB_RS00635 and AMB_RS00640 are separated by 16 nucleotides AMB_RS00625: AMB_RS00625 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 143,837 to 144,346 _RS00625 AMB_RS00630: AMB_RS00630 - glycosyl transferase, at 144,346 to 145,230 _RS00630 AMB_RS00635: AMB_RS00635 - gfo/Idh/MocA family oxidoreductase, at 145,312 to 146,325 _RS00635 AMB_RS00640: AMB_RS00640 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 146,342 to 147,442 _RS00640 Position (kb) 145 146 147Strain fitness (log2 ratio) -1 0 1at 146.337 kb on + strandat 146.337 kb on + strandat 146.337 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_initial_3
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146,337 + -0.7
146,337 + -1.3
146,337 + -1.3

Or see this region's nucleotide sequence