Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS28860

Experiment: L-Threonine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE40_RS28855 and ABIE40_RS28860 overlap by 4 nucleotidesABIE40_RS28860 and ABIE40_RS28865 are separated by 81 nucleotidesABIE40_RS28865 and ABIE40_RS28870 are separated by 132 nucleotides ABIE40_RS28855: ABIE40_RS28855 - helix-turn-helix transcriptional regulator, at 473,733 to 475,175 _RS28855 ABIE40_RS28860: ABIE40_RS28860 - hypothetical protein, at 475,172 to 475,699 _RS28860 ABIE40_RS28865: ABIE40_RS28865 - DUF72 domain-containing protein, at 475,781 to 476,472 _RS28865 ABIE40_RS28870: ABIE40_RS28870 - DUF3072 domain-containing protein, at 476,605 to 476,820 _RS28870 Position (kb) 475 476Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 474.220 kb on - strand, within ABIE40_RS28855at 474.231 kb on - strand, within ABIE40_RS28855at 474.238 kb on + strand, within ABIE40_RS28855at 474.238 kb on + strand, within ABIE40_RS28855at 474.375 kb on - strand, within ABIE40_RS28855at 474.375 kb on - strand, within ABIE40_RS28855at 474.375 kb on - strand, within ABIE40_RS28855at 474.375 kb on - strand, within ABIE40_RS28855at 474.375 kb on - strand, within ABIE40_RS28855at 474.375 kb on - strand, within ABIE40_RS28855at 474.382 kb on - strand, within ABIE40_RS28855at 474.436 kb on - strand, within ABIE40_RS28855at 474.440 kb on - strand, within ABIE40_RS28855at 474.449 kb on - strand, within ABIE40_RS28855at 474.449 kb on - strand, within ABIE40_RS28855at 474.458 kb on - strand, within ABIE40_RS28855at 474.607 kb on - strand, within ABIE40_RS28855at 474.680 kb on + strand, within ABIE40_RS28855at 474.681 kb on - strand, within ABIE40_RS28855at 474.681 kb on - strand, within ABIE40_RS28855at 474.681 kb on - strand, within ABIE40_RS28855at 474.681 kb on - strand, within ABIE40_RS28855at 474.681 kb on - strand, within ABIE40_RS28855at 474.763 kb on - strand, within ABIE40_RS28855at 474.763 kb on - strand, within ABIE40_RS28855at 474.837 kb on - strand, within ABIE40_RS28855at 474.856 kb on - strand, within ABIE40_RS28855at 474.914 kb on - strand, within ABIE40_RS28855at 475.021 kb on - strand, within ABIE40_RS28855at 475.154 kb on - strandat 475.188 kb on - strandat 475.188 kb on - strandat 475.188 kb on - strandat 475.247 kb on - strand, within ABIE40_RS28860at 475.247 kb on - strand, within ABIE40_RS28860at 475.247 kb on - strand, within ABIE40_RS28860at 475.248 kb on + strand, within ABIE40_RS28860at 475.248 kb on + strand, within ABIE40_RS28860at 475.248 kb on + strand, within ABIE40_RS28860at 475.248 kb on + strand, within ABIE40_RS28860at 475.248 kb on + strand, within ABIE40_RS28860at 475.249 kb on - strand, within ABIE40_RS28860at 475.249 kb on - strand, within ABIE40_RS28860at 475.249 kb on - strand, within ABIE40_RS28860at 475.249 kb on - strand, within ABIE40_RS28860at 475.253 kb on - strand, within ABIE40_RS28860at 475.253 kb on - strand, within ABIE40_RS28860at 475.299 kb on + strand, within ABIE40_RS28860at 475.353 kb on - strand, within ABIE40_RS28860at 475.353 kb on - strand, within ABIE40_RS28860at 475.463 kb on - strand, within ABIE40_RS28860at 475.463 kb on - strand, within ABIE40_RS28860at 475.560 kb on + strand, within ABIE40_RS28860at 475.560 kb on + strand, within ABIE40_RS28860at 475.620 kb on + strand, within ABIE40_RS28860at 475.655 kb on + strandat 475.703 kb on + strandat 475.703 kb on + strandat 475.763 kb on - strandat 475.834 kb on + strandat 475.834 kb on + strandat 475.834 kb on + strandat 475.834 kb on + strandat 475.834 kb on + strandat 475.835 kb on - strandat 475.900 kb on + strand, within ABIE40_RS28865at 475.901 kb on - strand, within ABIE40_RS28865at 475.901 kb on - strand, within ABIE40_RS28865at 475.901 kb on - strand, within ABIE40_RS28865at 475.902 kb on + strand, within ABIE40_RS28865at 475.902 kb on + strand, within ABIE40_RS28865at 475.903 kb on - strand, within ABIE40_RS28865at 475.903 kb on - strand, within ABIE40_RS28865at 475.903 kb on - strand, within ABIE40_RS28865at 475.903 kb on - strand, within ABIE40_RS28865at 475.903 kb on - strand, within ABIE40_RS28865at 475.945 kb on - strand, within ABIE40_RS28865at 475.945 kb on - strand, within ABIE40_RS28865at 476.014 kb on + strand, within ABIE40_RS28865at 476.014 kb on + strand, within ABIE40_RS28865at 476.014 kb on + strand, within ABIE40_RS28865at 476.016 kb on + strand, within ABIE40_RS28865at 476.017 kb on - strand, within ABIE40_RS28865at 476.067 kb on - strand, within ABIE40_RS28865at 476.067 kb on - strand, within ABIE40_RS28865at 476.345 kb on + strand, within ABIE40_RS28865at 476.346 kb on - strand, within ABIE40_RS28865at 476.346 kb on - strand, within ABIE40_RS28865at 476.382 kb on + strand, within ABIE40_RS28865at 476.383 kb on + strand, within ABIE40_RS28865at 476.383 kb on + strand, within ABIE40_RS28865at 476.383 kb on + strand, within ABIE40_RS28865at 476.383 kb on + strand, within ABIE40_RS28865at 476.383 kb on + strand, within ABIE40_RS28865at 476.383 kb on + strand, within ABIE40_RS28865at 476.384 kb on - strand, within ABIE40_RS28865at 476.384 kb on - strand, within ABIE40_RS28865at 476.384 kb on - strand, within ABIE40_RS28865at 476.384 kb on - strand, within ABIE40_RS28865at 476.384 kb on - strand, within ABIE40_RS28865at 476.384 kb on - strand, within ABIE40_RS28865at 476.384 kb on - strand, within ABIE40_RS28865at 476.384 kb on - strand, within ABIE40_RS28865at 476.387 kb on + strand, within ABIE40_RS28865at 476.387 kb on + strand, within ABIE40_RS28865at 476.388 kb on - strand, within ABIE40_RS28865at 476.412 kb on - strandat 476.493 kb on - strandat 476.534 kb on - strandat 476.628 kb on + strand, within ABIE40_RS28870at 476.628 kb on + strand, within ABIE40_RS28870at 476.628 kb on + strand, within ABIE40_RS28870at 476.628 kb on + strand, within ABIE40_RS28870at 476.628 kb on + strand, within ABIE40_RS28870at 476.628 kb on + strand, within ABIE40_RS28870at 476.628 kb on + strand, within ABIE40_RS28870at 476.628 kb on + strand, within ABIE40_RS28870at 476.628 kb on + strand, within ABIE40_RS28870at 476.629 kb on - strand, within ABIE40_RS28870at 476.629 kb on - strand, within ABIE40_RS28870at 476.629 kb on - strand, within ABIE40_RS28870at 476.629 kb on - strand, within ABIE40_RS28870at 476.629 kb on - strand, within ABIE40_RS28870at 476.629 kb on - strand, within ABIE40_RS28870at 476.629 kb on - strand, within ABIE40_RS28870at 476.629 kb on - strand, within ABIE40_RS28870

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
remove
474,220 - ABIE40_RS28855 0.34 -0.1
474,231 - ABIE40_RS28855 0.35 -1.0
474,238 + ABIE40_RS28855 0.35 -1.3
474,238 + ABIE40_RS28855 0.35 -0.6
474,375 - ABIE40_RS28855 0.44 +0.4
474,375 - ABIE40_RS28855 0.44 -0.8
474,375 - ABIE40_RS28855 0.44 -1.4
474,375 - ABIE40_RS28855 0.44 -0.5
474,375 - ABIE40_RS28855 0.44 -0.6
474,375 - ABIE40_RS28855 0.44 -2.3
474,382 - ABIE40_RS28855 0.45 -0.4
474,436 - ABIE40_RS28855 0.49 +0.2
474,440 - ABIE40_RS28855 0.49 -0.4
474,449 - ABIE40_RS28855 0.50 -1.4
474,449 - ABIE40_RS28855 0.50 -0.3
474,458 - ABIE40_RS28855 0.50 -2.8
474,607 - ABIE40_RS28855 0.61 +1.0
474,680 + ABIE40_RS28855 0.66 +0.4
474,681 - ABIE40_RS28855 0.66 -0.8
474,681 - ABIE40_RS28855 0.66 -1.7
474,681 - ABIE40_RS28855 0.66 -2.2
474,681 - ABIE40_RS28855 0.66 -0.4
474,681 - ABIE40_RS28855 0.66 +0.0
474,763 - ABIE40_RS28855 0.71 -0.8
474,763 - ABIE40_RS28855 0.71 -1.2
474,837 - ABIE40_RS28855 0.77 -0.1
474,856 - ABIE40_RS28855 0.78 -0.6
474,914 - ABIE40_RS28855 0.82 +2.6
475,021 - ABIE40_RS28855 0.89 -0.8
475,154 - -1.2
475,188 - +0.5
475,188 - -0.5
475,188 - +1.8
475,247 - ABIE40_RS28860 0.14 -1.9
475,247 - ABIE40_RS28860 0.14 -1.4
475,247 - ABIE40_RS28860 0.14 -0.0
475,248 + ABIE40_RS28860 0.14 +1.1
475,248 + ABIE40_RS28860 0.14 -1.1
475,248 + ABIE40_RS28860 0.14 -0.0
475,248 + ABIE40_RS28860 0.14 +0.9
475,248 + ABIE40_RS28860 0.14 -2.9
475,249 - ABIE40_RS28860 0.15 -0.6
475,249 - ABIE40_RS28860 0.15 +0.5
475,249 - ABIE40_RS28860 0.15 -0.2
475,249 - ABIE40_RS28860 0.15 -0.3
475,253 - ABIE40_RS28860 0.15 -0.9
475,253 - ABIE40_RS28860 0.15 +0.4
475,299 + ABIE40_RS28860 0.24 +0.9
475,353 - ABIE40_RS28860 0.34 +0.6
475,353 - ABIE40_RS28860 0.34 -2.4
475,463 - ABIE40_RS28860 0.55 +0.5
475,463 - ABIE40_RS28860 0.55 -2.8
475,560 + ABIE40_RS28860 0.73 +1.5
475,560 + ABIE40_RS28860 0.73 +1.6
475,620 + ABIE40_RS28860 0.85 -1.4
475,655 + +0.9
475,703 + -0.6
475,703 + -3.4
475,763 - -0.7
475,834 + +0.5
475,834 + -1.0
475,834 + +0.9
475,834 + -0.5
475,834 + +0.4
475,835 - +0.5
475,900 + ABIE40_RS28865 0.17 -0.4
475,901 - ABIE40_RS28865 0.17 +0.7
475,901 - ABIE40_RS28865 0.17 -0.7
475,901 - ABIE40_RS28865 0.17 -1.2
475,902 + ABIE40_RS28865 0.17 -0.4
475,902 + ABIE40_RS28865 0.17 -0.2
475,903 - ABIE40_RS28865 0.18 +1.3
475,903 - ABIE40_RS28865 0.18 +0.3
475,903 - ABIE40_RS28865 0.18 +1.1
475,903 - ABIE40_RS28865 0.18 -0.1
475,903 - ABIE40_RS28865 0.18 +2.6
475,945 - ABIE40_RS28865 0.24 -0.4
475,945 - ABIE40_RS28865 0.24 -0.6
476,014 + ABIE40_RS28865 0.34 +0.2
476,014 + ABIE40_RS28865 0.34 -0.8
476,014 + ABIE40_RS28865 0.34 -1.1
476,016 + ABIE40_RS28865 0.34 +0.3
476,017 - ABIE40_RS28865 0.34 +1.6
476,067 - ABIE40_RS28865 0.41 -0.7
476,067 - ABIE40_RS28865 0.41 -0.3
476,345 + ABIE40_RS28865 0.82 +0.1
476,346 - ABIE40_RS28865 0.82 -2.4
476,346 - ABIE40_RS28865 0.82 -0.3
476,382 + ABIE40_RS28865 0.87 -1.0
476,383 + ABIE40_RS28865 0.87 -0.3
476,383 + ABIE40_RS28865 0.87 -1.5
476,383 + ABIE40_RS28865 0.87 +0.1
476,383 + ABIE40_RS28865 0.87 +1.0
476,383 + ABIE40_RS28865 0.87 -0.2
476,383 + ABIE40_RS28865 0.87 -0.2
476,384 - ABIE40_RS28865 0.87 +0.5
476,384 - ABIE40_RS28865 0.87 +1.3
476,384 - ABIE40_RS28865 0.87 +0.9
476,384 - ABIE40_RS28865 0.87 +0.1
476,384 - ABIE40_RS28865 0.87 +0.5
476,384 - ABIE40_RS28865 0.87 -0.1
476,384 - ABIE40_RS28865 0.87 -0.3
476,384 - ABIE40_RS28865 0.87 +1.0
476,387 + ABIE40_RS28865 0.88 -1.2
476,387 + ABIE40_RS28865 0.88 +1.0
476,388 - ABIE40_RS28865 0.88 +1.2
476,412 - -1.5
476,493 - -0.5
476,534 - -0.6
476,628 + ABIE40_RS28870 0.11 -1.7
476,628 + ABIE40_RS28870 0.11 +1.1
476,628 + ABIE40_RS28870 0.11 -0.5
476,628 + ABIE40_RS28870 0.11 +0.1
476,628 + ABIE40_RS28870 0.11 -0.3
476,628 + ABIE40_RS28870 0.11 -1.0
476,628 + ABIE40_RS28870 0.11 +0.6
476,628 + ABIE40_RS28870 0.11 +0.9
476,628 + ABIE40_RS28870 0.11 +0.7
476,629 - ABIE40_RS28870 0.11 -0.8
476,629 - ABIE40_RS28870 0.11 -1.9
476,629 - ABIE40_RS28870 0.11 -0.9
476,629 - ABIE40_RS28870 0.11 +1.1
476,629 - ABIE40_RS28870 0.11 -1.6
476,629 - ABIE40_RS28870 0.11 -0.8
476,629 - ABIE40_RS28870 0.11 +0.1
476,629 - ABIE40_RS28870 0.11 -1.0

Or see this region's nucleotide sequence