Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS28690

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS28685 and ABIE40_RS28690 are separated by 126 nucleotidesABIE40_RS28690 and ABIE40_RS28695 are separated by 178 nucleotidesABIE40_RS28695 and ABIE40_RS28700 are separated by 104 nucleotides ABIE40_RS28685: ABIE40_RS28685 - YbhB/YbcL family Raf kinase inhibitor-like protein, at 434,570 to 436,366 _RS28685 ABIE40_RS28690: ABIE40_RS28690 - thiamine pyrophosphate-requiring protein, at 436,493 to 438,280 _RS28690 ABIE40_RS28695: ABIE40_RS28695 - DUF6766 family protein, at 438,459 to 439,130 _RS28695 ABIE40_RS28700: ABIE40_RS28700 - flavodoxin family protein, at 439,235 to 440,344 _RS28700 Position (kb) 436 437 438 439Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 435.561 kb on + strand, within ABIE40_RS28685at 435.561 kb on + strand, within ABIE40_RS28685at 435.561 kb on + strand, within ABIE40_RS28685at 435.598 kb on - strand, within ABIE40_RS28685at 435.815 kb on - strand, within ABIE40_RS28685at 435.815 kb on - strand, within ABIE40_RS28685at 435.836 kb on - strand, within ABIE40_RS28685at 435.836 kb on - strand, within ABIE40_RS28685at 435.837 kb on + strand, within ABIE40_RS28685at 435.837 kb on + strand, within ABIE40_RS28685at 435.837 kb on + strand, within ABIE40_RS28685at 435.837 kb on + strand, within ABIE40_RS28685at 435.837 kb on + strand, within ABIE40_RS28685at 435.838 kb on - strand, within ABIE40_RS28685at 435.838 kb on - strand, within ABIE40_RS28685at 435.838 kb on - strand, within ABIE40_RS28685at 435.838 kb on - strand, within ABIE40_RS28685at 435.838 kb on - strand, within ABIE40_RS28685at 435.981 kb on + strand, within ABIE40_RS28685at 436.028 kb on + strand, within ABIE40_RS28685at 436.029 kb on - strand, within ABIE40_RS28685at 436.039 kb on + strand, within ABIE40_RS28685at 436.116 kb on + strand, within ABIE40_RS28685at 436.305 kb on - strandat 436.305 kb on - strandat 436.351 kb on + strandat 436.352 kb on - strandat 436.352 kb on - strandat 436.523 kb on + strandat 436.523 kb on + strandat 436.524 kb on - strandat 436.524 kb on - strandat 436.524 kb on - strandat 436.771 kb on - strand, within ABIE40_RS28690at 436.876 kb on + strand, within ABIE40_RS28690at 436.877 kb on - strand, within ABIE40_RS28690at 436.877 kb on - strand, within ABIE40_RS28690at 436.877 kb on - strand, within ABIE40_RS28690at 436.877 kb on - strand, within ABIE40_RS28690at 436.978 kb on + strand, within ABIE40_RS28690at 436.979 kb on - strand, within ABIE40_RS28690at 436.979 kb on - strand, within ABIE40_RS28690at 436.979 kb on - strand, within ABIE40_RS28690at 436.999 kb on - strand, within ABIE40_RS28690at 436.999 kb on - strand, within ABIE40_RS28690at 437.016 kb on + strand, within ABIE40_RS28690at 437.017 kb on - strand, within ABIE40_RS28690at 437.097 kb on + strand, within ABIE40_RS28690at 437.097 kb on + strand, within ABIE40_RS28690at 437.097 kb on + strand, within ABIE40_RS28690at 437.499 kb on - strand, within ABIE40_RS28690at 437.534 kb on - strand, within ABIE40_RS28690at 437.747 kb on - strand, within ABIE40_RS28690at 437.747 kb on - strand, within ABIE40_RS28690at 437.747 kb on - strand, within ABIE40_RS28690at 437.772 kb on + strand, within ABIE40_RS28690at 437.772 kb on + strand, within ABIE40_RS28690at 437.772 kb on + strand, within ABIE40_RS28690at 437.773 kb on - strand, within ABIE40_RS28690at 437.773 kb on - strand, within ABIE40_RS28690at 438.021 kb on + strand, within ABIE40_RS28690at 438.021 kb on + strand, within ABIE40_RS28690at 438.022 kb on - strand, within ABIE40_RS28690at 438.210 kb on + strandat 438.227 kb on + strandat 438.227 kb on + strandat 438.228 kb on - strandat 438.240 kb on + strandat 438.241 kb on - strandat 438.287 kb on - strandat 438.316 kb on - strandat 438.388 kb on - strandat 438.398 kb on + strandat 438.443 kb on + strandat 438.444 kb on - strandat 438.444 kb on - strandat 438.460 kb on + strandat 438.461 kb on - strandat 438.461 kb on - strandat 438.743 kb on - strand, within ABIE40_RS28695at 438.748 kb on + strand, within ABIE40_RS28695at 438.748 kb on + strand, within ABIE40_RS28695at 438.748 kb on + strand, within ABIE40_RS28695at 438.884 kb on + strand, within ABIE40_RS28695at 438.895 kb on + strand, within ABIE40_RS28695at 438.895 kb on + strand, within ABIE40_RS28695at 438.895 kb on + strand, within ABIE40_RS28695at 438.895 kb on + strand, within ABIE40_RS28695at 438.896 kb on - strand, within ABIE40_RS28695at 438.970 kb on + strand, within ABIE40_RS28695at 438.971 kb on - strand, within ABIE40_RS28695at 438.971 kb on - strand, within ABIE40_RS28695at 439.018 kb on + strand, within ABIE40_RS28695at 439.018 kb on + strand, within ABIE40_RS28695at 439.019 kb on - strand, within ABIE40_RS28695at 439.080 kb on - strandat 439.123 kb on + strandat 439.124 kb on - strandat 439.124 kb on - strandat 439.144 kb on + strandat 439.209 kb on + strandat 439.228 kb on + strandat 439.228 kb on + strandat 439.228 kb on + strandat 439.229 kb on - strandat 439.229 kb on - strandat 439.235 kb on - strandat 439.235 kb on - strandat 439.255 kb on + strandat 439.255 kb on + strandat 439.256 kb on - strandat 439.256 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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435,561 + ABIE40_RS28685 0.55 +0.1
435,561 + ABIE40_RS28685 0.55 +0.9
435,561 + ABIE40_RS28685 0.55 +0.4
435,598 - ABIE40_RS28685 0.57 +0.2
435,815 - ABIE40_RS28685 0.69 -0.2
435,815 - ABIE40_RS28685 0.69 +1.6
435,836 - ABIE40_RS28685 0.70 -0.3
435,836 - ABIE40_RS28685 0.70 +0.6
435,837 + ABIE40_RS28685 0.71 -0.4
435,837 + ABIE40_RS28685 0.71 -2.6
435,837 + ABIE40_RS28685 0.71 +0.8
435,837 + ABIE40_RS28685 0.71 -0.8
435,837 + ABIE40_RS28685 0.71 -2.3
435,838 - ABIE40_RS28685 0.71 +1.1
435,838 - ABIE40_RS28685 0.71 -0.8
435,838 - ABIE40_RS28685 0.71 +0.1
435,838 - ABIE40_RS28685 0.71 +1.8
435,838 - ABIE40_RS28685 0.71 +0.2
435,981 + ABIE40_RS28685 0.79 +1.6
436,028 + ABIE40_RS28685 0.81 -0.5
436,029 - ABIE40_RS28685 0.81 +1.4
436,039 + ABIE40_RS28685 0.82 -0.0
436,116 + ABIE40_RS28685 0.86 +0.1
436,305 - +0.6
436,305 - +0.7
436,351 + -0.7
436,352 - -1.3
436,352 - +0.8
436,523 + -0.6
436,523 + -1.5
436,524 - +0.6
436,524 - +0.5
436,524 - -1.0
436,771 - ABIE40_RS28690 0.16 -0.0
436,876 + ABIE40_RS28690 0.21 +0.6
436,877 - ABIE40_RS28690 0.21 +0.4
436,877 - ABIE40_RS28690 0.21 -0.0
436,877 - ABIE40_RS28690 0.21 -0.1
436,877 - ABIE40_RS28690 0.21 -0.0
436,978 + ABIE40_RS28690 0.27 +2.8
436,979 - ABIE40_RS28690 0.27 -0.0
436,979 - ABIE40_RS28690 0.27 -0.3
436,979 - ABIE40_RS28690 0.27 +0.2
436,999 - ABIE40_RS28690 0.28 +0.4
436,999 - ABIE40_RS28690 0.28 -0.2
437,016 + ABIE40_RS28690 0.29 -1.6
437,017 - ABIE40_RS28690 0.29 -1.8
437,097 + ABIE40_RS28690 0.34 +0.6
437,097 + ABIE40_RS28690 0.34 -0.2
437,097 + ABIE40_RS28690 0.34 -0.8
437,499 - ABIE40_RS28690 0.56 +2.0
437,534 - ABIE40_RS28690 0.58 +0.6
437,747 - ABIE40_RS28690 0.70 +0.9
437,747 - ABIE40_RS28690 0.70 -0.7
437,747 - ABIE40_RS28690 0.70 -0.3
437,772 + ABIE40_RS28690 0.72 +0.1
437,772 + ABIE40_RS28690 0.72 +1.2
437,772 + ABIE40_RS28690 0.72 +0.8
437,773 - ABIE40_RS28690 0.72 -0.4
437,773 - ABIE40_RS28690 0.72 +1.6
438,021 + ABIE40_RS28690 0.85 +0.8
438,021 + ABIE40_RS28690 0.85 +0.1
438,022 - ABIE40_RS28690 0.86 +0.7
438,210 + +0.1
438,227 + -0.4
438,227 + -0.4
438,228 - +0.6
438,240 + -0.2
438,241 - -0.8
438,287 - -0.9
438,316 - -0.2
438,388 - -0.4
438,398 + -1.3
438,443 + +0.7
438,444 - -1.2
438,444 - -0.8
438,460 + -2.2
438,461 - -2.2
438,461 - -0.4
438,743 - ABIE40_RS28695 0.42 -1.0
438,748 + ABIE40_RS28695 0.43 +2.3
438,748 + ABIE40_RS28695 0.43 -1.0
438,748 + ABIE40_RS28695 0.43 -1.8
438,884 + ABIE40_RS28695 0.63 -0.3
438,895 + ABIE40_RS28695 0.65 +1.3
438,895 + ABIE40_RS28695 0.65 -2.1
438,895 + ABIE40_RS28695 0.65 +0.1
438,895 + ABIE40_RS28695 0.65 -0.5
438,896 - ABIE40_RS28695 0.65 +0.3
438,970 + ABIE40_RS28695 0.76 -0.3
438,971 - ABIE40_RS28695 0.76 +2.2
438,971 - ABIE40_RS28695 0.76 -0.3
439,018 + ABIE40_RS28695 0.83 +0.2
439,018 + ABIE40_RS28695 0.83 -0.5
439,019 - ABIE40_RS28695 0.83 +0.2
439,080 - -1.4
439,123 + -0.6
439,124 - -2.0
439,124 - -0.8
439,144 + -1.0
439,209 + +1.1
439,228 + -1.2
439,228 + -2.9
439,228 + +0.2
439,229 - +2.6
439,229 - -1.7
439,235 - +0.9
439,235 - +0.7
439,255 + +0.2
439,255 + -0.9
439,256 - -1.2
439,256 - +0.2

Or see this region's nucleotide sequence