Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS22290 and ABIE40_RS22295 are separated by 202 nucleotides ABIE40_RS22295 and ABIE40_RS22300 are separated by 212 nucleotides ABIE40_RS22300 and ABIE40_RS22305 are separated by 176 nucleotides ABIE40_RS22305 and ABIE40_RS22310 are separated by 125 nucleotides
ABIE40_RS22290: ABIE40_RS22290 - hypothetical protein, at 589,752 to 591,284
_RS22290
ABIE40_RS22295: ABIE40_RS22295 - hypothetical protein, at 591,487 to 591,816
_RS22295
ABIE40_RS22300: ABIE40_RS22300 - superoxide dismutase, at 592,029 to 592,631
_RS22300
ABIE40_RS22305: ABIE40_RS22305 - pyridoxamine 5'-phosphate oxidase family protein, at 592,808 to 593,458
_RS22305
ABIE40_RS22310: ABIE40_RS22310 - GrpB family protein, at 593,584 to 594,135
_RS22310
Position (kb) 592
593 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 591.154 kb on + strand at 591.339 kb on + strand at 591.343 kb on + strand at 591.343 kb on + strand at 591.343 kb on + strand at 591.343 kb on + strand at 591.344 kb on - strand at 591.344 kb on - strand at 591.369 kb on + strand at 591.465 kb on + strand at 591.573 kb on + strand, within ABIE40_RS22295 at 591.573 kb on + strand, within ABIE40_RS22295 at 591.573 kb on + strand, within ABIE40_RS22295 at 591.574 kb on - strand, within ABIE40_RS22295 at 591.629 kb on + strand, within ABIE40_RS22295 at 591.629 kb on + strand, within ABIE40_RS22295 at 591.804 kb on + strand at 591.805 kb on - strand at 591.975 kb on + strand at 591.975 kb on + strand at 591.975 kb on + strand at 591.975 kb on + strand at 591.976 kb on - strand at 591.976 kb on - strand at 591.976 kb on - strand at 592.025 kb on + strand at 592.025 kb on + strand at 592.025 kb on + strand at 592.026 kb on - strand at 592.026 kb on - strand at 592.026 kb on - strand at 592.026 kb on - strand at 592.026 kb on - strand at 592.026 kb on - strand at 592.026 kb on - strand at 592.026 kb on - strand at 592.062 kb on + strand at 592.062 kb on + strand at 592.063 kb on - strand at 592.132 kb on - strand, within ABIE40_RS22300 at 592.132 kb on - strand, within ABIE40_RS22300 at 592.252 kb on - strand, within ABIE40_RS22300 at 592.252 kb on - strand, within ABIE40_RS22300 at 592.252 kb on - strand, within ABIE40_RS22300 at 592.355 kb on + strand, within ABIE40_RS22300 at 592.355 kb on + strand, within ABIE40_RS22300 at 592.355 kb on + strand, within ABIE40_RS22300 at 592.524 kb on + strand, within ABIE40_RS22300 at 592.524 kb on + strand, within ABIE40_RS22300 at 592.525 kb on - strand, within ABIE40_RS22300 at 592.527 kb on + strand, within ABIE40_RS22300 at 592.528 kb on - strand, within ABIE40_RS22300 at 592.528 kb on - strand, within ABIE40_RS22300 at 592.558 kb on - strand, within ABIE40_RS22300 at 592.596 kb on + strand at 592.596 kb on + strand at 592.596 kb on + strand at 592.596 kb on + strand at 592.597 kb on - strand at 592.750 kb on - strand at 592.750 kb on - strand at 592.770 kb on - strand at 592.801 kb on + strand at 592.801 kb on + strand at 592.801 kb on + strand at 592.801 kb on + strand at 592.801 kb on + strand at 592.801 kb on + strand at 592.802 kb on - strand at 592.802 kb on - strand at 592.804 kb on + strand at 592.804 kb on + strand at 592.804 kb on + strand at 592.805 kb on - strand at 592.805 kb on - strand at 592.805 kb on - strand at 592.805 kb on - strand at 592.805 kb on - strand at 592.805 kb on - strand at 592.805 kb on - strand at 592.805 kb on - strand at 592.805 kb on - strand at 592.805 kb on - strand at 592.805 kb on - strand at 592.805 kb on - strand at 592.805 kb on - strand at 592.842 kb on + strand at 593.103 kb on + strand, within ABIE40_RS22305 at 593.103 kb on + strand, within ABIE40_RS22305 at 593.103 kb on + strand, within ABIE40_RS22305 at 593.103 kb on + strand, within ABIE40_RS22305 at 593.103 kb on + strand, within ABIE40_RS22305 at 593.103 kb on + strand, within ABIE40_RS22305 at 593.103 kb on + strand, within ABIE40_RS22305 at 593.104 kb on - strand, within ABIE40_RS22305 at 593.104 kb on - strand, within ABIE40_RS22305 at 593.438 kb on + strand at 593.439 kb on - strand at 593.439 kb on - strand at 593.439 kb on - strand at 593.439 kb on - strand at 593.440 kb on + strand at 593.440 kb on + strand at 593.440 kb on + strand at 593.454 kb on - strand at 593.518 kb on + strand at 593.518 kb on + strand at 593.519 kb on - strand at 593.519 kb on - strand at 593.519 kb on - strand at 593.601 kb on + strand at 593.602 kb on - strand at 593.602 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 591,154 + -1.1 591,339 + +0.4 591,343 + -2.3 591,343 + -3.2 591,343 + -0.1 591,343 + -2.0 591,344 - -1.6 591,344 - -2.4 591,369 + +2.2 591,465 + -0.5 591,573 + ABIE40_RS22295 0.26 -1.5 591,573 + ABIE40_RS22295 0.26 -0.2 591,573 + ABIE40_RS22295 0.26 -0.0 591,574 - ABIE40_RS22295 0.26 +0.8 591,629 + ABIE40_RS22295 0.43 -0.1 591,629 + ABIE40_RS22295 0.43 -0.1 591,804 + +0.4 591,805 - +1.3 591,975 + +0.6 591,975 + -0.3 591,975 + +0.1 591,975 + +0.3 591,976 - -0.3 591,976 - -0.1 591,976 - +0.7 592,025 + -0.5 592,025 + -1.9 592,025 + -1.8 592,026 - -1.4 592,026 - -1.1 592,026 - -0.7 592,026 - -0.3 592,026 - -3.4 592,026 - -2.1 592,026 - -1.4 592,026 - -2.5 592,062 + -0.2 592,062 + -2.3 592,063 - -2.5 592,132 - ABIE40_RS22300 0.17 -3.7 592,132 - ABIE40_RS22300 0.17 -2.0 592,252 - ABIE40_RS22300 0.37 +0.2 592,252 - ABIE40_RS22300 0.37 -0.2 592,252 - ABIE40_RS22300 0.37 -2.5 592,355 + ABIE40_RS22300 0.54 -1.3 592,355 + ABIE40_RS22300 0.54 -1.8 592,355 + ABIE40_RS22300 0.54 -2.5 592,524 + ABIE40_RS22300 0.82 -1.6 592,524 + ABIE40_RS22300 0.82 +0.5 592,525 - ABIE40_RS22300 0.82 -0.4 592,527 + ABIE40_RS22300 0.83 -1.4 592,528 - ABIE40_RS22300 0.83 -0.6 592,528 - ABIE40_RS22300 0.83 -0.1 592,558 - ABIE40_RS22300 0.88 -3.8 592,596 + -0.4 592,596 + -0.8 592,596 + -2.4 592,596 + -2.8 592,597 - -0.1 592,750 - +0.0 592,750 - +1.6 592,770 - +1.0 592,801 + +0.0 592,801 + -0.2 592,801 + +2.7 592,801 + -0.8 592,801 + +0.2 592,801 + -1.5 592,802 - -0.0 592,802 - +0.7 592,804 + +0.4 592,804 + +0.5 592,804 + +0.4 592,805 - -0.0 592,805 - -1.8 592,805 - +1.4 592,805 - -0.9 592,805 - -0.8 592,805 - -0.2 592,805 - +0.6 592,805 - +0.2 592,805 - -3.4 592,805 - +1.2 592,805 - -1.0 592,805 - -3.9 592,805 - -1.1 592,842 + -1.9 593,103 + ABIE40_RS22305 0.45 -0.8 593,103 + ABIE40_RS22305 0.45 -1.0 593,103 + ABIE40_RS22305 0.45 -0.1 593,103 + ABIE40_RS22305 0.45 +0.1 593,103 + ABIE40_RS22305 0.45 +1.9 593,103 + ABIE40_RS22305 0.45 -2.0 593,103 + ABIE40_RS22305 0.45 +0.6 593,104 - ABIE40_RS22305 0.45 -1.1 593,104 - ABIE40_RS22305 0.45 +0.5 593,438 + -2.3 593,439 - -0.1 593,439 - -0.1 593,439 - -1.1 593,439 - -0.7 593,440 + -0.8 593,440 + -1.6 593,440 + -0.9 593,454 - +0.1 593,518 + +0.4 593,518 + -0.4 593,519 - -2.9 593,519 - -2.0 593,519 - -0.3 593,601 + +0.3 593,602 - +0.8 593,602 - +1.8
Or see this region's nucleotide sequence