Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS21910

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS21905 and ABIE40_RS21910 are separated by 29 nucleotidesABIE40_RS21910 and ABIE40_RS21915 are separated by 174 nucleotidesABIE40_RS21915 and ABIE40_RS21920 are separated by 119 nucleotides ABIE40_RS21905: ABIE40_RS21905 - Ldh family oxidoreductase, at 505,293 to 506,333 _RS21905 ABIE40_RS21910: ABIE40_RS21910 - M20 aminoacylase family protein, at 506,363 to 507,541 _RS21910 ABIE40_RS21915: ABIE40_RS21915 - hypothetical protein, at 507,716 to 508,051 _RS21915 ABIE40_RS21920: ABIE40_RS21920 - DMT family transporter, at 508,171 to 509,094 _RS21920 Position (kb) 506 507 508Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 505.394 kb on + strandat 505.394 kb on + strandat 505.394 kb on + strandat 505.395 kb on - strandat 505.395 kb on - strandat 505.395 kb on - strandat 505.396 kb on + strandat 505.558 kb on + strand, within ABIE40_RS21905at 505.559 kb on - strand, within ABIE40_RS21905at 505.798 kb on + strand, within ABIE40_RS21905at 505.804 kb on + strand, within ABIE40_RS21905at 505.804 kb on + strand, within ABIE40_RS21905at 505.804 kb on + strand, within ABIE40_RS21905at 505.804 kb on + strand, within ABIE40_RS21905at 505.804 kb on + strand, within ABIE40_RS21905at 505.804 kb on + strand, within ABIE40_RS21905at 505.805 kb on - strand, within ABIE40_RS21905at 505.805 kb on - strand, within ABIE40_RS21905at 505.805 kb on - strand, within ABIE40_RS21905at 505.805 kb on - strand, within ABIE40_RS21905at 505.805 kb on - strand, within ABIE40_RS21905at 505.805 kb on - strand, within ABIE40_RS21905at 505.895 kb on - strand, within ABIE40_RS21905at 505.895 kb on - strand, within ABIE40_RS21905at 506.182 kb on + strand, within ABIE40_RS21905at 506.182 kb on + strand, within ABIE40_RS21905at 506.182 kb on + strand, within ABIE40_RS21905at 506.183 kb on - strand, within ABIE40_RS21905at 506.339 kb on + strandat 506.339 kb on + strandat 506.339 kb on + strandat 506.340 kb on - strandat 506.365 kb on - strandat 506.409 kb on + strandat 506.523 kb on + strand, within ABIE40_RS21910at 506.523 kb on + strand, within ABIE40_RS21910at 506.523 kb on + strand, within ABIE40_RS21910at 506.523 kb on + strand, within ABIE40_RS21910at 506.523 kb on + strand, within ABIE40_RS21910at 506.523 kb on + strand, within ABIE40_RS21910at 506.524 kb on - strand, within ABIE40_RS21910at 506.524 kb on - strand, within ABIE40_RS21910at 506.524 kb on - strand, within ABIE40_RS21910at 506.524 kb on - strand, within ABIE40_RS21910at 506.524 kb on - strand, within ABIE40_RS21910at 506.524 kb on - strand, within ABIE40_RS21910at 506.556 kb on + strand, within ABIE40_RS21910at 506.556 kb on + strand, within ABIE40_RS21910at 506.557 kb on - strand, within ABIE40_RS21910at 506.826 kb on + strand, within ABIE40_RS21910at 506.826 kb on + strand, within ABIE40_RS21910at 506.826 kb on + strand, within ABIE40_RS21910at 506.826 kb on + strand, within ABIE40_RS21910at 506.826 kb on + strand, within ABIE40_RS21910at 506.827 kb on - strand, within ABIE40_RS21910at 506.827 kb on - strand, within ABIE40_RS21910at 506.827 kb on - strand, within ABIE40_RS21910at 506.827 kb on - strand, within ABIE40_RS21910at 506.827 kb on - strand, within ABIE40_RS21910at 506.827 kb on - strand, within ABIE40_RS21910at 506.827 kb on - strand, within ABIE40_RS21910at 506.827 kb on - strand, within ABIE40_RS21910at 506.827 kb on - strand, within ABIE40_RS21910at 506.827 kb on - strand, within ABIE40_RS21910at 506.827 kb on - strand, within ABIE40_RS21910at 506.899 kb on + strand, within ABIE40_RS21910at 506.899 kb on + strand, within ABIE40_RS21910at 506.900 kb on - strand, within ABIE40_RS21910at 506.900 kb on - strand, within ABIE40_RS21910at 506.900 kb on - strand, within ABIE40_RS21910at 506.900 kb on - strand, within ABIE40_RS21910at 507.049 kb on + strand, within ABIE40_RS21910at 507.049 kb on + strand, within ABIE40_RS21910at 507.050 kb on - strand, within ABIE40_RS21910at 507.050 kb on - strand, within ABIE40_RS21910at 507.050 kb on - strand, within ABIE40_RS21910at 507.060 kb on + strand, within ABIE40_RS21910at 507.060 kb on + strand, within ABIE40_RS21910at 507.061 kb on - strand, within ABIE40_RS21910at 507.061 kb on - strand, within ABIE40_RS21910at 507.061 kb on - strand, within ABIE40_RS21910at 507.267 kb on + strand, within ABIE40_RS21910at 507.267 kb on + strand, within ABIE40_RS21910at 507.267 kb on + strand, within ABIE40_RS21910at 507.268 kb on - strand, within ABIE40_RS21910at 507.268 kb on - strand, within ABIE40_RS21910at 507.268 kb on - strand, within ABIE40_RS21910at 507.665 kb on - strandat 507.689 kb on + strandat 507.690 kb on - strandat 507.690 kb on - strandat 507.820 kb on + strand, within ABIE40_RS21915at 508.080 kb on + strandat 508.080 kb on + strandat 508.080 kb on + strandat 508.081 kb on - strandat 508.150 kb on + strandat 508.245 kb on + strandat 508.245 kb on + strandat 508.469 kb on - strand, within ABIE40_RS21920at 508.498 kb on + strand, within ABIE40_RS21920at 508.498 kb on + strand, within ABIE40_RS21920at 508.498 kb on + strand, within ABIE40_RS21920at 508.498 kb on + strand, within ABIE40_RS21920at 508.498 kb on + strand, within ABIE40_RS21920at 508.498 kb on + strand, within ABIE40_RS21920at 508.498 kb on + strand, within ABIE40_RS21920at 508.498 kb on + strand, within ABIE40_RS21920at 508.499 kb on - strand, within ABIE40_RS21920at 508.499 kb on - strand, within ABIE40_RS21920at 508.499 kb on - strand, within ABIE40_RS21920at 508.499 kb on - strand, within ABIE40_RS21920at 508.499 kb on - strand, within ABIE40_RS21920at 508.499 kb on - strand, within ABIE40_RS21920at 508.499 kb on - strand, within ABIE40_RS21920at 508.499 kb on - strand, within ABIE40_RS21920at 508.500 kb on + strand, within ABIE40_RS21920at 508.501 kb on - strand, within ABIE40_RS21920at 508.516 kb on + strand, within ABIE40_RS21920at 508.517 kb on - strand, within ABIE40_RS21920at 508.517 kb on - strand, within ABIE40_RS21920at 508.517 kb on - strand, within ABIE40_RS21920

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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505,394 + +0.3
505,394 + -0.4
505,394 + +1.3
505,395 - -0.1
505,395 - +0.9
505,395 - +0.1
505,396 + -2.2
505,558 + ABIE40_RS21905 0.25 -2.1
505,559 - ABIE40_RS21905 0.26 +0.6
505,798 + ABIE40_RS21905 0.49 +1.3
505,804 + ABIE40_RS21905 0.49 -0.5
505,804 + ABIE40_RS21905 0.49 +0.5
505,804 + ABIE40_RS21905 0.49 +0.2
505,804 + ABIE40_RS21905 0.49 +0.4
505,804 + ABIE40_RS21905 0.49 +0.9
505,804 + ABIE40_RS21905 0.49 -1.2
505,805 - ABIE40_RS21905 0.49 +0.7
505,805 - ABIE40_RS21905 0.49 +1.4
505,805 - ABIE40_RS21905 0.49 +0.7
505,805 - ABIE40_RS21905 0.49 -3.1
505,805 - ABIE40_RS21905 0.49 -1.2
505,805 - ABIE40_RS21905 0.49 -0.5
505,895 - ABIE40_RS21905 0.58 -3.8
505,895 - ABIE40_RS21905 0.58 +1.0
506,182 + ABIE40_RS21905 0.85 -0.8
506,182 + ABIE40_RS21905 0.85 +5.3
506,182 + ABIE40_RS21905 0.85 +0.0
506,183 - ABIE40_RS21905 0.85 -0.9
506,339 + -1.6
506,339 + -0.2
506,339 + -2.3
506,340 - -0.8
506,365 - +0.3
506,409 + +0.8
506,523 + ABIE40_RS21910 0.14 -0.5
506,523 + ABIE40_RS21910 0.14 -2.5
506,523 + ABIE40_RS21910 0.14 +1.1
506,523 + ABIE40_RS21910 0.14 -0.4
506,523 + ABIE40_RS21910 0.14 +1.7
506,523 + ABIE40_RS21910 0.14 -1.1
506,524 - ABIE40_RS21910 0.14 -2.5
506,524 - ABIE40_RS21910 0.14 -2.5
506,524 - ABIE40_RS21910 0.14 -0.8
506,524 - ABIE40_RS21910 0.14 -2.9
506,524 - ABIE40_RS21910 0.14 +1.0
506,524 - ABIE40_RS21910 0.14 +0.2
506,556 + ABIE40_RS21910 0.16 -0.2
506,556 + ABIE40_RS21910 0.16 -1.8
506,557 - ABIE40_RS21910 0.16 -1.1
506,826 + ABIE40_RS21910 0.39 -0.1
506,826 + ABIE40_RS21910 0.39 -1.4
506,826 + ABIE40_RS21910 0.39 +3.9
506,826 + ABIE40_RS21910 0.39 +0.5
506,826 + ABIE40_RS21910 0.39 -0.4
506,827 - ABIE40_RS21910 0.39 +0.1
506,827 - ABIE40_RS21910 0.39 +1.6
506,827 - ABIE40_RS21910 0.39 -0.3
506,827 - ABIE40_RS21910 0.39 -1.0
506,827 - ABIE40_RS21910 0.39 +1.0
506,827 - ABIE40_RS21910 0.39 +0.0
506,827 - ABIE40_RS21910 0.39 -0.7
506,827 - ABIE40_RS21910 0.39 -0.3
506,827 - ABIE40_RS21910 0.39 -1.7
506,827 - ABIE40_RS21910 0.39 -1.4
506,827 - ABIE40_RS21910 0.39 -1.0
506,899 + ABIE40_RS21910 0.45 +2.0
506,899 + ABIE40_RS21910 0.45 -2.0
506,900 - ABIE40_RS21910 0.46 +1.1
506,900 - ABIE40_RS21910 0.46 -0.5
506,900 - ABIE40_RS21910 0.46 -0.9
506,900 - ABIE40_RS21910 0.46 +2.0
507,049 + ABIE40_RS21910 0.58 -0.0
507,049 + ABIE40_RS21910 0.58 +0.7
507,050 - ABIE40_RS21910 0.58 -0.1
507,050 - ABIE40_RS21910 0.58 +0.2
507,050 - ABIE40_RS21910 0.58 -1.6
507,060 + ABIE40_RS21910 0.59 -1.9
507,060 + ABIE40_RS21910 0.59 -0.0
507,061 - ABIE40_RS21910 0.59 -0.5
507,061 - ABIE40_RS21910 0.59 -0.2
507,061 - ABIE40_RS21910 0.59 +0.1
507,267 + ABIE40_RS21910 0.77 -0.6
507,267 + ABIE40_RS21910 0.77 -0.6
507,267 + ABIE40_RS21910 0.77 +0.0
507,268 - ABIE40_RS21910 0.77 -1.3
507,268 - ABIE40_RS21910 0.77 -1.6
507,268 - ABIE40_RS21910 0.77 -1.3
507,665 - -2.3
507,689 + -0.4
507,690 - +0.2
507,690 - -1.0
507,820 + ABIE40_RS21915 0.31 +0.4
508,080 + -0.7
508,080 + -1.2
508,080 + +0.2
508,081 - -0.3
508,150 + -0.2
508,245 + -0.1
508,245 + -1.0
508,469 - ABIE40_RS21920 0.32 +0.9
508,498 + ABIE40_RS21920 0.35 +0.3
508,498 + ABIE40_RS21920 0.35 -0.0
508,498 + ABIE40_RS21920 0.35 +0.1
508,498 + ABIE40_RS21920 0.35 -0.6
508,498 + ABIE40_RS21920 0.35 +1.6
508,498 + ABIE40_RS21920 0.35 +1.3
508,498 + ABIE40_RS21920 0.35 -0.6
508,498 + ABIE40_RS21920 0.35 -0.5
508,499 - ABIE40_RS21920 0.35 -2.9
508,499 - ABIE40_RS21920 0.35 +1.2
508,499 - ABIE40_RS21920 0.35 -0.5
508,499 - ABIE40_RS21920 0.35 +0.4
508,499 - ABIE40_RS21920 0.35 +0.0
508,499 - ABIE40_RS21920 0.35 -0.9
508,499 - ABIE40_RS21920 0.35 -0.8
508,499 - ABIE40_RS21920 0.35 +0.1
508,500 + ABIE40_RS21920 0.36 -0.9
508,501 - ABIE40_RS21920 0.36 -1.7
508,516 + ABIE40_RS21920 0.37 -2.6
508,517 - ABIE40_RS21920 0.37 -0.5
508,517 - ABIE40_RS21920 0.37 +2.1
508,517 - ABIE40_RS21920 0.37 -0.1

Or see this region's nucleotide sequence