Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS20880

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS20870 and ABIE40_RS20875 overlap by 1 nucleotidesABIE40_RS20875 and ABIE40_RS20880 are separated by 67 nucleotidesABIE40_RS20880 and ABIE40_RS20885 are separated by 22 nucleotides ABIE40_RS20870: ABIE40_RS20870 - cytochrome o ubiquinol oxidase subunit III, at 288,501 to 289,127 _RS20870 ABIE40_RS20875: ABIE40_RS20875 - cytochrome o ubiquinol oxidase subunit IV, at 289,127 to 289,486 _RS20875 ABIE40_RS20880: ABIE40_RS20880 - 5-aminolevulinate synthase, at 289,554 to 290,777 _RS20880 ABIE40_RS20885: ABIE40_RS20885 - DUF2849 domain-containing protein, at 290,800 to 292,797 _RS20885 Position (kb) 289 290 291Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 288.606 kb on + strand, within ABIE40_RS20870at 288.607 kb on - strand, within ABIE40_RS20870at 288.607 kb on - strand, within ABIE40_RS20870at 288.607 kb on - strand, within ABIE40_RS20870at 288.607 kb on - strand, within ABIE40_RS20870at 288.714 kb on + strand, within ABIE40_RS20870at 288.715 kb on - strand, within ABIE40_RS20870at 288.715 kb on - strand, within ABIE40_RS20870at 288.927 kb on + strand, within ABIE40_RS20870at 288.927 kb on + strand, within ABIE40_RS20870at 288.928 kb on - strand, within ABIE40_RS20870at 288.928 kb on - strand, within ABIE40_RS20870at 288.928 kb on - strand, within ABIE40_RS20870at 288.928 kb on - strand, within ABIE40_RS20870at 289.107 kb on + strandat 289.175 kb on + strand, within ABIE40_RS20875at 289.175 kb on + strand, within ABIE40_RS20875at 289.175 kb on + strand, within ABIE40_RS20875at 289.175 kb on + strand, within ABIE40_RS20875at 289.175 kb on + strand, within ABIE40_RS20875at 289.175 kb on + strand, within ABIE40_RS20875at 289.176 kb on - strand, within ABIE40_RS20875at 289.176 kb on - strand, within ABIE40_RS20875at 289.176 kb on - strand, within ABIE40_RS20875at 289.278 kb on + strand, within ABIE40_RS20875at 289.278 kb on + strand, within ABIE40_RS20875at 289.278 kb on + strand, within ABIE40_RS20875at 289.278 kb on + strand, within ABIE40_RS20875at 289.278 kb on + strand, within ABIE40_RS20875at 289.279 kb on - strand, within ABIE40_RS20875at 289.279 kb on - strand, within ABIE40_RS20875at 289.560 kb on + strandat 289.560 kb on + strandat 289.560 kb on + strandat 289.560 kb on + strandat 289.560 kb on + strandat 289.561 kb on - strandat 289.561 kb on - strandat 289.561 kb on - strandat 289.561 kb on - strandat 289.561 kb on - strandat 289.561 kb on - strandat 289.561 kb on - strandat 289.561 kb on - strandat 289.561 kb on - strandat 289.569 kb on - strandat 289.719 kb on + strand, within ABIE40_RS20880at 289.719 kb on + strand, within ABIE40_RS20880at 289.719 kb on + strand, within ABIE40_RS20880at 289.720 kb on - strand, within ABIE40_RS20880at 289.720 kb on - strand, within ABIE40_RS20880at 289.720 kb on - strand, within ABIE40_RS20880at 289.939 kb on + strand, within ABIE40_RS20880at 289.939 kb on + strand, within ABIE40_RS20880at 289.939 kb on + strand, within ABIE40_RS20880at 289.939 kb on + strand, within ABIE40_RS20880at 289.940 kb on - strand, within ABIE40_RS20880at 289.940 kb on - strand, within ABIE40_RS20880at 290.183 kb on + strand, within ABIE40_RS20880at 290.183 kb on + strand, within ABIE40_RS20880at 290.183 kb on + strand, within ABIE40_RS20880at 290.184 kb on - strand, within ABIE40_RS20880at 290.184 kb on - strand, within ABIE40_RS20880at 290.184 kb on - strand, within ABIE40_RS20880at 290.188 kb on - strand, within ABIE40_RS20880at 290.188 kb on - strand, within ABIE40_RS20880at 290.188 kb on - strand, within ABIE40_RS20880at 290.188 kb on - strand, within ABIE40_RS20880at 290.217 kb on + strand, within ABIE40_RS20880at 290.218 kb on - strand, within ABIE40_RS20880at 290.319 kb on + strand, within ABIE40_RS20880at 290.319 kb on + strand, within ABIE40_RS20880at 290.320 kb on - strand, within ABIE40_RS20880at 290.320 kb on - strand, within ABIE40_RS20880at 290.320 kb on - strand, within ABIE40_RS20880at 290.320 kb on - strand, within ABIE40_RS20880at 290.321 kb on + strand, within ABIE40_RS20880at 290.321 kb on + strand, within ABIE40_RS20880at 290.321 kb on + strand, within ABIE40_RS20880at 290.322 kb on - strand, within ABIE40_RS20880at 290.322 kb on - strand, within ABIE40_RS20880at 290.322 kb on - strand, within ABIE40_RS20880at 290.616 kb on + strand, within ABIE40_RS20880at 290.616 kb on + strand, within ABIE40_RS20880at 290.616 kb on + strand, within ABIE40_RS20880at 290.616 kb on + strand, within ABIE40_RS20880at 290.616 kb on + strand, within ABIE40_RS20880at 290.617 kb on - strand, within ABIE40_RS20880at 290.617 kb on - strand, within ABIE40_RS20880at 290.617 kb on - strand, within ABIE40_RS20880at 290.617 kb on - strand, within ABIE40_RS20880at 290.617 kb on - strand, within ABIE40_RS20880at 290.617 kb on - strand, within ABIE40_RS20880at 290.617 kb on - strand, within ABIE40_RS20880at 290.617 kb on - strand, within ABIE40_RS20880at 290.702 kb on + strandat 290.702 kb on + strandat 290.703 kb on - strandat 290.811 kb on + strandat 290.811 kb on + strandat 290.812 kb on - strandat 290.812 kb on - strandat 290.812 kb on - strandat 290.816 kb on + strandat 290.816 kb on + strandat 290.816 kb on + strandat 290.817 kb on - strandat 290.930 kb on + strandat 290.931 kb on - strandat 290.931 kb on - strandat 291.023 kb on + strand, within ABIE40_RS20885at 291.024 kb on - strand, within ABIE40_RS20885at 291.156 kb on + strand, within ABIE40_RS20885at 291.157 kb on - strand, within ABIE40_RS20885at 291.157 kb on - strand, within ABIE40_RS20885at 291.160 kb on + strand, within ABIE40_RS20885at 291.160 kb on + strand, within ABIE40_RS20885at 291.161 kb on - strand, within ABIE40_RS20885at 291.161 kb on - strand, within ABIE40_RS20885at 291.161 kb on - strand, within ABIE40_RS20885at 291.161 kb on - strand, within ABIE40_RS20885at 291.161 kb on - strand, within ABIE40_RS20885at 291.167 kb on - strand, within ABIE40_RS20885at 291.176 kb on - strand, within ABIE40_RS20885at 291.292 kb on + strand, within ABIE40_RS20885at 291.292 kb on + strand, within ABIE40_RS20885at 291.293 kb on - strand, within ABIE40_RS20885at 291.293 kb on - strand, within ABIE40_RS20885at 291.310 kb on + strand, within ABIE40_RS20885at 291.374 kb on - strand, within ABIE40_RS20885at 291.374 kb on - strand, within ABIE40_RS20885at 291.374 kb on - strand, within ABIE40_RS20885at 291.388 kb on + strand, within ABIE40_RS20885at 291.388 kb on + strand, within ABIE40_RS20885at 291.388 kb on + strand, within ABIE40_RS20885at 291.388 kb on + strand, within ABIE40_RS20885at 291.389 kb on - strand, within ABIE40_RS20885at 291.389 kb on - strand, within ABIE40_RS20885at 291.389 kb on - strand, within ABIE40_RS20885at 291.389 kb on - strand, within ABIE40_RS20885at 291.389 kb on - strand, within ABIE40_RS20885at 291.589 kb on + strand, within ABIE40_RS20885at 291.637 kb on + strand, within ABIE40_RS20885at 291.637 kb on + strand, within ABIE40_RS20885at 291.638 kb on - strand, within ABIE40_RS20885at 291.653 kb on + strand, within ABIE40_RS20885at 291.760 kb on + strand, within ABIE40_RS20885at 291.760 kb on + strand, within ABIE40_RS20885at 291.760 kb on + strand, within ABIE40_RS20885at 291.761 kb on - strand, within ABIE40_RS20885at 291.761 kb on - strand, within ABIE40_RS20885

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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288,606 + ABIE40_RS20870 0.17 -0.4
288,607 - ABIE40_RS20870 0.17 -0.3
288,607 - ABIE40_RS20870 0.17 +0.5
288,607 - ABIE40_RS20870 0.17 +0.4
288,607 - ABIE40_RS20870 0.17 +0.2
288,714 + ABIE40_RS20870 0.34 +1.2
288,715 - ABIE40_RS20870 0.34 +2.4
288,715 - ABIE40_RS20870 0.34 +0.2
288,927 + ABIE40_RS20870 0.68 +1.2
288,927 + ABIE40_RS20870 0.68 -0.7
288,928 - ABIE40_RS20870 0.68 -1.3
288,928 - ABIE40_RS20870 0.68 +0.7
288,928 - ABIE40_RS20870 0.68 +1.4
288,928 - ABIE40_RS20870 0.68 -1.2
289,107 + +0.7
289,175 + ABIE40_RS20875 0.13 -1.5
289,175 + ABIE40_RS20875 0.13 -3.0
289,175 + ABIE40_RS20875 0.13 -0.5
289,175 + ABIE40_RS20875 0.13 +0.1
289,175 + ABIE40_RS20875 0.13 -1.1
289,175 + ABIE40_RS20875 0.13 +0.4
289,176 - ABIE40_RS20875 0.14 -0.0
289,176 - ABIE40_RS20875 0.14 -1.3
289,176 - ABIE40_RS20875 0.14 +0.7
289,278 + ABIE40_RS20875 0.42 -0.1
289,278 + ABIE40_RS20875 0.42 -0.6
289,278 + ABIE40_RS20875 0.42 -0.2
289,278 + ABIE40_RS20875 0.42 -0.5
289,278 + ABIE40_RS20875 0.42 -0.5
289,279 - ABIE40_RS20875 0.42 -0.0
289,279 - ABIE40_RS20875 0.42 -0.6
289,560 + -0.3
289,560 + +0.0
289,560 + -1.5
289,560 + -0.7
289,560 + -0.8
289,561 - +0.4
289,561 - +0.9
289,561 - +0.1
289,561 - -0.2
289,561 - -0.8
289,561 - +0.0
289,561 - +0.9
289,561 - -0.3
289,561 - -0.5
289,569 - -0.0
289,719 + ABIE40_RS20880 0.13 +1.5
289,719 + ABIE40_RS20880 0.13 -0.2
289,719 + ABIE40_RS20880 0.13 -0.4
289,720 - ABIE40_RS20880 0.14 -0.8
289,720 - ABIE40_RS20880 0.14 +0.1
289,720 - ABIE40_RS20880 0.14 -1.2
289,939 + ABIE40_RS20880 0.31 -0.6
289,939 + ABIE40_RS20880 0.31 -0.5
289,939 + ABIE40_RS20880 0.31 +2.7
289,939 + ABIE40_RS20880 0.31 +0.2
289,940 - ABIE40_RS20880 0.32 +0.7
289,940 - ABIE40_RS20880 0.32 -0.2
290,183 + ABIE40_RS20880 0.51 -1.2
290,183 + ABIE40_RS20880 0.51 +0.6
290,183 + ABIE40_RS20880 0.51 -2.2
290,184 - ABIE40_RS20880 0.51 -0.2
290,184 - ABIE40_RS20880 0.51 -1.1
290,184 - ABIE40_RS20880 0.51 -0.6
290,188 - ABIE40_RS20880 0.52 -0.1
290,188 - ABIE40_RS20880 0.52 -0.1
290,188 - ABIE40_RS20880 0.52 -0.6
290,188 - ABIE40_RS20880 0.52 -0.3
290,217 + ABIE40_RS20880 0.54 +0.5
290,218 - ABIE40_RS20880 0.54 -0.3
290,319 + ABIE40_RS20880 0.62 +0.6
290,319 + ABIE40_RS20880 0.62 +0.4
290,320 - ABIE40_RS20880 0.63 +0.8
290,320 - ABIE40_RS20880 0.63 -1.8
290,320 - ABIE40_RS20880 0.63 -1.5
290,320 - ABIE40_RS20880 0.63 +0.1
290,321 + ABIE40_RS20880 0.63 +1.2
290,321 + ABIE40_RS20880 0.63 -0.3
290,321 + ABIE40_RS20880 0.63 -0.5
290,322 - ABIE40_RS20880 0.63 +0.9
290,322 - ABIE40_RS20880 0.63 +2.4
290,322 - ABIE40_RS20880 0.63 -1.2
290,616 + ABIE40_RS20880 0.87 -0.3
290,616 + ABIE40_RS20880 0.87 -0.6
290,616 + ABIE40_RS20880 0.87 -0.6
290,616 + ABIE40_RS20880 0.87 +0.3
290,616 + ABIE40_RS20880 0.87 -1.5
290,617 - ABIE40_RS20880 0.87 -0.8
290,617 - ABIE40_RS20880 0.87 -0.5
290,617 - ABIE40_RS20880 0.87 +0.4
290,617 - ABIE40_RS20880 0.87 -0.7
290,617 - ABIE40_RS20880 0.87 -0.9
290,617 - ABIE40_RS20880 0.87 -1.2
290,617 - ABIE40_RS20880 0.87 -0.1
290,617 - ABIE40_RS20880 0.87 -1.0
290,702 + -1.6
290,702 + -1.5
290,703 - +0.2
290,811 + -0.4
290,811 + +0.4
290,812 - -0.1
290,812 - +0.5
290,812 - -0.9
290,816 + +0.2
290,816 + -1.7
290,816 + -1.3
290,817 - +0.4
290,930 + -1.2
290,931 - +0.2
290,931 - +0.3
291,023 + ABIE40_RS20885 0.11 -3.0
291,024 - ABIE40_RS20885 0.11 -1.9
291,156 + ABIE40_RS20885 0.18 -0.2
291,157 - ABIE40_RS20885 0.18 -2.0
291,157 - ABIE40_RS20885 0.18 -0.2
291,160 + ABIE40_RS20885 0.18 -0.7
291,160 + ABIE40_RS20885 0.18 +0.2
291,161 - ABIE40_RS20885 0.18 +0.7
291,161 - ABIE40_RS20885 0.18 -1.2
291,161 - ABIE40_RS20885 0.18 -0.5
291,161 - ABIE40_RS20885 0.18 +0.4
291,161 - ABIE40_RS20885 0.18 -0.6
291,167 - ABIE40_RS20885 0.18 -1.6
291,176 - ABIE40_RS20885 0.19 +1.5
291,292 + ABIE40_RS20885 0.25 -0.9
291,292 + ABIE40_RS20885 0.25 -0.6
291,293 - ABIE40_RS20885 0.25 +0.3
291,293 - ABIE40_RS20885 0.25 +0.1
291,310 + ABIE40_RS20885 0.26 -2.0
291,374 - ABIE40_RS20885 0.29 -0.4
291,374 - ABIE40_RS20885 0.29 -0.9
291,374 - ABIE40_RS20885 0.29 +0.2
291,388 + ABIE40_RS20885 0.29 +0.1
291,388 + ABIE40_RS20885 0.29 +0.1
291,388 + ABIE40_RS20885 0.29 -1.0
291,388 + ABIE40_RS20885 0.29 +0.6
291,389 - ABIE40_RS20885 0.29 +0.0
291,389 - ABIE40_RS20885 0.29 +0.3
291,389 - ABIE40_RS20885 0.29 -0.2
291,389 - ABIE40_RS20885 0.29 -1.0
291,389 - ABIE40_RS20885 0.29 +0.1
291,589 + ABIE40_RS20885 0.39 -0.6
291,637 + ABIE40_RS20885 0.42 -0.9
291,637 + ABIE40_RS20885 0.42 +1.6
291,638 - ABIE40_RS20885 0.42 -1.2
291,653 + ABIE40_RS20885 0.43 -0.4
291,760 + ABIE40_RS20885 0.48 -0.1
291,760 + ABIE40_RS20885 0.48 -0.5
291,760 + ABIE40_RS20885 0.48 +1.6
291,761 - ABIE40_RS20885 0.48 -0.8
291,761 - ABIE40_RS20885 0.48 -0.7

Or see this region's nucleotide sequence