Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS18300

Experiment: L-Threonine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Threonine (C)
3,654,843	-				-1.7
3,654,985	-		ABIE40_RS18290	0.17	-0.7
3,655,012	-		ABIE40_RS18290	0.21	-1.4
3,655,041	+		ABIE40_RS18290	0.24	-3.1
3,655,041	+		ABIE40_RS18290	0.24	-0.7
3,655,041	+		ABIE40_RS18290	0.24	+1.3
3,655,041	+		ABIE40_RS18290	0.24	+0.9
3,655,041	+		ABIE40_RS18290	0.24	-0.1
3,655,041	+		ABIE40_RS18290	0.24	-1.9
3,655,041	+		ABIE40_RS18290	0.24	-1.6
3,655,041	+		ABIE40_RS18290	0.24	+1.3
3,655,041	+		ABIE40_RS18290	0.24	-2.9
3,655,041	+		ABIE40_RS18290	0.24	-2.7
3,655,041	+		ABIE40_RS18290	0.24	-3.2
3,655,041	+		ABIE40_RS18290	0.24	-0.9
3,655,041	+		ABIE40_RS18290	0.24	-0.7
3,655,041	+		ABIE40_RS18290	0.24	-0.7
3,655,041	+		ABIE40_RS18290	0.24	-2.3
3,655,041	+		ABIE40_RS18290	0.24	-0.1
3,655,041	+		ABIE40_RS18290	0.24	+0.3
3,655,042	-		ABIE40_RS18290	0.25	-2.1
3,655,042	-		ABIE40_RS18290	0.25	-1.8
3,655,042	-		ABIE40_RS18290	0.25	-1.2
3,655,042	-		ABIE40_RS18290	0.25	-2.2
3,655,042	-		ABIE40_RS18290	0.25	-2.4
3,655,042	-		ABIE40_RS18290	0.25	-1.1
3,655,042	-		ABIE40_RS18290	0.25	-1.8
3,655,042	-		ABIE40_RS18290	0.25	-1.3
3,655,042	-		ABIE40_RS18290	0.25	-2.0
3,655,042	-		ABIE40_RS18290	0.25	-3.6
3,655,042	-		ABIE40_RS18290	0.25	+0.9
3,655,042	-		ABIE40_RS18290	0.25	-1.5
3,655,042	-		ABIE40_RS18290	0.25	-1.0
3,655,042	-		ABIE40_RS18290	0.25	-2.5
3,655,042	-		ABIE40_RS18290	0.25	-0.8
3,655,043	+		ABIE40_RS18290	0.25	-2.8
3,655,043	+		ABIE40_RS18290	0.25	-2.0
3,655,044	-		ABIE40_RS18290	0.25	-1.8
3,655,044	-		ABIE40_RS18290	0.25	-1.3
3,655,044	-		ABIE40_RS18290	0.25	-1.5
3,655,046	-		ABIE40_RS18290	0.25	-1.1
3,655,080	+		ABIE40_RS18290	0.30	-2.3
3,655,080	+		ABIE40_RS18290	0.30	-3.1
3,655,080	+		ABIE40_RS18290	0.30	-1.4
3,655,081	-		ABIE40_RS18290	0.30	-0.7
3,655,081	-		ABIE40_RS18290	0.30	-2.6
3,655,081	-		ABIE40_RS18290	0.30	-2.2
3,655,081	-		ABIE40_RS18290	0.30	-2.7
3,655,284	+		ABIE40_RS18290	0.56	-2.5
3,655,284	+		ABIE40_RS18290	0.56	+0.1
3,655,284	+		ABIE40_RS18290	0.56	-2.9
3,655,284	+		ABIE40_RS18290	0.56	-2.4
3,655,284	+		ABIE40_RS18290	0.56	-0.9
3,655,285	-		ABIE40_RS18290	0.56	-0.8
3,655,285	-		ABIE40_RS18290	0.56	-2.5
3,655,285	-		ABIE40_RS18290	0.56	+0.5
3,655,635	+				-2.0
3,655,635	+				-1.5
3,655,636	-				-1.7
3,655,636	-				-2.0
3,655,636	-				-2.3
3,655,636	-				-2.0
3,655,636	-				-3.1
3,655,642	-		ABIE40_RS18295	0.13	-0.7
3,655,642	-		ABIE40_RS18295	0.13	-1.4
3,655,651	-		ABIE40_RS18295	0.18	-1.1
3,655,832	+				+1.3
3,655,898	+		ABIE40_RS18300	0.19	-2.7
3,655,925	-		ABIE40_RS18300	0.23	-0.2
3,656,144	+		ABIE40_RS18300	0.59	-2.1
3,656,145	-		ABIE40_RS18300	0.60	-1.4
3,656,145	-		ABIE40_RS18300	0.60	-1.6
3,656,145	-		ABIE40_RS18300	0.60	-3.7
3,656,145	-		ABIE40_RS18300	0.60	-3.4
3,656,145	-		ABIE40_RS18300	0.60	-2.6
3,656,253	-		ABIE40_RS18300	0.77	-1.4
3,656,270	+		ABIE40_RS18300	0.80	-3.1
3,656,270	+		ABIE40_RS18300	0.80	-3.7
3,656,271	-		ABIE40_RS18300	0.80	-0.8
3,656,271	-		ABIE40_RS18300	0.80	-1.5
3,656,271	-		ABIE40_RS18300	0.80	+0.6
3,656,271	-		ABIE40_RS18300	0.80	-3.1
3,656,271	-		ABIE40_RS18300	0.80	-1.7
3,656,300	+		ABIE40_RS18300	0.85	-1.8
3,656,300	+		ABIE40_RS18300	0.85	-1.8
3,656,300	+		ABIE40_RS18300	0.85	-1.2
3,656,300	+		ABIE40_RS18300	0.85	-3.3
3,656,300	+		ABIE40_RS18300	0.85	+0.3
3,656,301	-		ABIE40_RS18300	0.85	+0.3
3,656,301	-		ABIE40_RS18300	0.85	-3.6
3,656,388	-				+0.1
3,656,388	-				+0.0
3,656,402	+				+0.4
3,656,402	+				+1.0
3,656,402	+				+0.8
3,656,402	+				+0.3
3,656,402	+				-1.6
3,656,403	-				-0.4
3,656,556	+				-1.7
3,656,556	+				+0.6
3,656,556	+				-2.0
3,656,557	-				+0.2
3,656,557	-				+2.2
3,656,562	+				-0.3
3,656,563	-				+0.3
3,656,563	-				-0.1
3,656,567	+				+0.6
3,656,567	+				-1.4
3,656,567	+				-0.7
3,656,567	+				-0.9
3,656,567	+				-1.1
3,656,567	+				+0.2
3,656,567	+				+0.4
3,656,567	+				+0.6
3,656,567	+				-0.6
3,656,567	+				+1.0
3,656,567	+				-0.5
3,656,568	-				-0.2
3,656,568	-				+0.1
3,656,568	-				-0.5
3,656,568	-				-0.6
3,656,568	-				+0.1
3,656,568	-				+1.3
3,656,568	-				-0.0
3,656,651	+		ABIE40_RS18305	0.14	-0.9
3,656,652	-		ABIE40_RS18305	0.15	+0.1
3,656,777	+		ABIE40_RS18305	0.36	+0.4
3,656,777	+		ABIE40_RS18305	0.36	-0.0
3,656,777	+		ABIE40_RS18305	0.36	+0.9
3,656,780	+		ABIE40_RS18305	0.36	+3.9
3,656,781	-		ABIE40_RS18305	0.37	-1.6
3,656,781	-		ABIE40_RS18305	0.37	+0.2
3,656,781	-		ABIE40_RS18305	0.37	-0.5
3,656,781	-		ABIE40_RS18305	0.37	-0.3
3,656,922	+		ABIE40_RS18305	0.61	+0.1
3,656,946	+		ABIE40_RS18305	0.65	-0.4
3,656,946	+		ABIE40_RS18305	0.65	-0.6
3,656,947	-		ABIE40_RS18305	0.65	-0.9
3,656,947	-		ABIE40_RS18305	0.65	-0.5
3,656,947	-		ABIE40_RS18305	0.65	-0.4
3,656,961	-		ABIE40_RS18305	0.67	-0.1
3,656,961	-		ABIE40_RS18305	0.67	+1.6
3,656,986	-		ABIE40_RS18305	0.71	-0.7
3,657,023	+		ABIE40_RS18305	0.78	+2.6
3,657,024	-		ABIE40_RS18305	0.78	-0.9
3,657,024	-		ABIE40_RS18305	0.78	-0.3
3,657,059	+		ABIE40_RS18305	0.84	+1.6
3,657,060	-		ABIE40_RS18305	0.84	+0.3