Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS18125

Experiment: L-Threonine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Threonine (C)
3,621,686	+		ABIE40_RS18115	0.40	+0.9
3,621,720	-		ABIE40_RS18115	0.48	-1.4
3,621,721	+		ABIE40_RS18115	0.48	+2.3
3,621,721	+		ABIE40_RS18115	0.48	+0.4
3,621,721	+		ABIE40_RS18115	0.48	+1.4
3,621,722	-		ABIE40_RS18115	0.48	+0.2
3,621,722	-		ABIE40_RS18115	0.48	-0.7
3,621,722	-		ABIE40_RS18115	0.48	+0.7
3,621,722	-		ABIE40_RS18115	0.48	+0.3
3,621,722	-		ABIE40_RS18115	0.48	-2.5
3,621,821	+		ABIE40_RS18115	0.71	-0.6
3,621,821	+		ABIE40_RS18115	0.71	-1.1
3,621,822	-		ABIE40_RS18115	0.71	+0.4
3,621,822	-		ABIE40_RS18115	0.71	-2.1
3,621,822	-		ABIE40_RS18115	0.71	+1.1
3,621,833	+		ABIE40_RS18115	0.73	+1.4
3,621,833	+		ABIE40_RS18115	0.73	+1.3
3,621,892	-		ABIE40_RS18115	0.87	-0.2
3,621,963	+				-1.1
3,621,964	-				-0.2
3,621,964	-				-0.8
3,621,964	-				+0.6
3,622,050	+		ABIE40_RS18120	0.17	-1.9
3,622,051	-		ABIE40_RS18120	0.18	-0.1
3,622,051	-		ABIE40_RS18120	0.18	-0.5
3,622,072	+		ABIE40_RS18120	0.22	-1.9
3,622,185	+		ABIE40_RS18120	0.44	-0.1
3,622,186	-		ABIE40_RS18120	0.44	-0.5
3,622,377	+		ABIE40_RS18120	0.82	-0.8
3,622,377	+		ABIE40_RS18120	0.82	-1.7
3,622,377	+		ABIE40_RS18120	0.82	-1.0
3,622,377	+		ABIE40_RS18120	0.82	-1.6
3,622,377	+		ABIE40_RS18120	0.82	-1.7
3,622,377	+		ABIE40_RS18120	0.82	-0.3
3,622,377	+		ABIE40_RS18120	0.82	-1.2
3,622,378	-		ABIE40_RS18120	0.82	-0.9
3,622,378	-		ABIE40_RS18120	0.82	-1.3
3,622,378	-		ABIE40_RS18120	0.82	-0.6
3,622,378	-		ABIE40_RS18120	0.82	-1.5
3,622,378	-		ABIE40_RS18120	0.82	+1.1
3,622,378	-		ABIE40_RS18120	0.82	-0.2
3,622,412	+		ABIE40_RS18120	0.89	-0.4
3,622,468	+				+0.6
3,622,474	+				+0.0
3,622,474	+				-0.4
3,622,474	+				-0.5
3,622,475	-				-0.8
3,622,498	+				-3.3
3,622,498	+				+0.7
3,622,498	+				-1.0
3,622,498	+				-1.2
3,622,498	+				-1.9
3,622,499	-				-2.0
3,622,499	-				-2.9
3,622,541	+				+0.4
3,622,541	+				+0.4
3,622,541	+				-0.4
3,622,542	-				+1.2
3,622,542	-				+0.2
3,622,542	-				-0.3
3,622,542	-				+1.0
3,622,542	-				-0.8
3,622,614	+				-1.1
3,622,614	+				-0.7
3,622,615	-				-2.2
3,622,663	+				-1.0
3,622,663	+				-0.7
3,622,663	+				+1.2
3,622,664	-				-0.5
3,622,664	-				-2.5
3,622,664	-				-0.7
3,622,714	+				+0.0
3,622,715	-				+0.4
3,622,715	-				-2.7
3,622,715	-				-1.4
3,622,715	-				-3.1
3,622,715	-				-1.1
3,622,923	-		ABIE40_RS18125	0.14	-1.2
3,622,923	-		ABIE40_RS18125	0.14	-0.3
3,622,930	+		ABIE40_RS18125	0.15	-3.0
3,622,930	+		ABIE40_RS18125	0.15	-0.7
3,622,930	+		ABIE40_RS18125	0.15	-1.2
3,622,931	-		ABIE40_RS18125	0.15	-1.5
3,622,931	-		ABIE40_RS18125	0.15	-2.5
3,622,991	-		ABIE40_RS18125	0.18	-1.9
3,623,059	+		ABIE40_RS18125	0.22	-2.1
3,623,060	-		ABIE40_RS18125	0.22	-2.0
3,623,060	-		ABIE40_RS18125	0.22	-0.7
3,623,069	-		ABIE40_RS18125	0.22	+1.6
3,623,069	-		ABIE40_RS18125	0.22	-1.1
3,623,069	-		ABIE40_RS18125	0.22	-2.9
3,623,175	-		ABIE40_RS18125	0.28	-3.5
3,623,318	+		ABIE40_RS18125	0.36	-0.7
3,623,319	-		ABIE40_RS18125	0.36	-1.6
3,623,319	-		ABIE40_RS18125	0.36	-0.6
3,623,738	+		ABIE40_RS18125	0.59	-0.2
3,623,739	-		ABIE40_RS18125	0.59	-2.2
3,624,002	-		ABIE40_RS18125	0.73	-0.5
3,624,230	+		ABIE40_RS18125	0.86	-1.7
3,624,230	+		ABIE40_RS18125	0.86	+0.3
3,624,231	-		ABIE40_RS18125	0.86	-2.8
3,624,231	-		ABIE40_RS18125	0.86	-2.6
3,624,513	+				-2.3
3,624,552	+				-0.1
3,624,553	-				-1.6
3,624,553	-				-0.8
3,624,609	+				+3.0
3,624,610	-				-0.7
3,624,616	+				-2.6
3,624,616	+				-0.6
3,624,616	+				-1.0
3,624,617	-				+1.2
3,624,805	+		ABIE40_RS18130	0.12	-1.3
3,624,805	+		ABIE40_RS18130	0.12	-2.1
3,624,806	-		ABIE40_RS18130	0.13	+2.2
3,624,806	-		ABIE40_RS18130	0.13	+0.2
3,624,806	-		ABIE40_RS18130	0.13	-1.9
3,624,825	+		ABIE40_RS18130	0.14	-0.6
3,624,825	+		ABIE40_RS18130	0.14	-0.0
3,624,826	-		ABIE40_RS18130	0.14	+0.6
3,624,826	-		ABIE40_RS18130	0.14	-2.3
3,624,903	+		ABIE40_RS18130	0.19	+1.1
3,624,903	+		ABIE40_RS18130	0.19	-1.1
3,624,904	-		ABIE40_RS18130	0.19	+0.1
3,624,904	-		ABIE40_RS18130	0.19	-0.2
3,624,906	+		ABIE40_RS18130	0.19	-1.5
3,624,906	+		ABIE40_RS18130	0.19	+0.7
3,624,906	+		ABIE40_RS18130	0.19	+0.6
3,624,906	+		ABIE40_RS18130	0.19	+0.6
3,624,907	-		ABIE40_RS18130	0.19	-1.9
3,624,922	-		ABIE40_RS18130	0.20	-2.7
3,624,922	-		ABIE40_RS18130	0.20	+0.5
3,624,949	+		ABIE40_RS18130	0.22	+0.6
3,624,949	+		ABIE40_RS18130	0.22	+0.1
3,624,949	+		ABIE40_RS18130	0.22	-0.0
3,624,950	-		ABIE40_RS18130	0.22	+0.5
3,624,950	-		ABIE40_RS18130	0.22	+0.1
3,625,065	+		ABIE40_RS18130	0.29	+0.6
3,625,066	-		ABIE40_RS18130	0.29	+0.4
3,625,066	-		ABIE40_RS18130	0.29	-0.9
3,625,066	-		ABIE40_RS18130	0.29	-0.4
3,625,066	-		ABIE40_RS18130	0.29	+0.1
3,625,066	-		ABIE40_RS18130	0.29	-0.5
3,625,216	+		ABIE40_RS18130	0.39	+0.2
3,625,216	+		ABIE40_RS18130	0.39	+0.4
3,625,217	-		ABIE40_RS18130	0.39	-0.3
3,625,217	-		ABIE40_RS18130	0.39	+0.6
3,625,217	-		ABIE40_RS18130	0.39	+0.5
3,625,231	-		ABIE40_RS18130	0.39	-2.4
3,625,272	+		ABIE40_RS18130	0.42	-1.9
3,625,272	+		ABIE40_RS18130	0.42	+0.2
3,625,273	-		ABIE40_RS18130	0.42	-0.1
3,625,273	-		ABIE40_RS18130	0.42	-0.4
3,625,273	-		ABIE40_RS18130	0.42	-2.2
3,625,287	+		ABIE40_RS18130	0.43	-0.5
3,625,292	-		ABIE40_RS18130	0.43	+1.8
3,625,315	-		ABIE40_RS18130	0.45	+0.0
3,625,315	-		ABIE40_RS18130	0.45	+1.7
3,625,387	-		ABIE40_RS18130	0.49	-0.2
3,625,387	-		ABIE40_RS18130	0.49	-0.4
3,625,387	-		ABIE40_RS18130	0.49	+0.5
3,625,387	-		ABIE40_RS18130	0.49	+1.1
3,625,387	-		ABIE40_RS18130	0.49	+0.3