Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS16530

Experiment: L-Threonine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Threonine (C)
3,290,509	+		ABIE40_RS16520	0.79	-0.8
3,290,639	-		ABIE40_RS16520	0.83	+0.2
3,290,650	+		ABIE40_RS16520	0.84	-0.0
3,290,650	+		ABIE40_RS16520	0.84	+0.5
3,290,650	+		ABIE40_RS16520	0.84	-0.7
3,290,651	-		ABIE40_RS16520	0.84	-0.9
3,290,716	+		ABIE40_RS16520	0.86	-1.1
3,290,716	+		ABIE40_RS16520	0.86	+0.6
3,290,716	+		ABIE40_RS16520	0.86	+0.4
3,290,717	-		ABIE40_RS16520	0.86	-0.9
3,290,717	-		ABIE40_RS16520	0.86	+1.1
3,290,717	-		ABIE40_RS16520	0.86	-0.3
3,290,717	-		ABIE40_RS16520	0.86	-2.6
3,290,758	+		ABIE40_RS16520	0.87	-1.1
3,290,758	+		ABIE40_RS16520	0.87	+0.1
3,290,758	+		ABIE40_RS16520	0.87	-0.3
3,290,758	+		ABIE40_RS16520	0.87	-1.2
3,290,758	+		ABIE40_RS16520	0.87	-2.8
3,290,758	+		ABIE40_RS16520	0.87	+0.1
3,290,758	+		ABIE40_RS16520	0.87	-1.8
3,290,759	-		ABIE40_RS16520	0.87	+4.5
3,290,759	-		ABIE40_RS16520	0.87	-2.1
3,290,759	-		ABIE40_RS16520	0.87	-0.6
3,290,759	-		ABIE40_RS16520	0.87	+1.7
3,290,761	+		ABIE40_RS16520	0.87	-0.1
3,290,761	+		ABIE40_RS16520	0.87	+3.3
3,290,761	+		ABIE40_RS16520	0.87	+2.3
3,290,762	-		ABIE40_RS16520	0.87	-1.1
3,290,762	-		ABIE40_RS16520	0.87	-0.2
3,290,980	+				-0.5
3,290,980	+				+0.6
3,290,980	+				-0.8
3,290,980	+				+0.1
3,290,980	+				-0.4
3,290,980	+				-0.9
3,290,980	+				-1.8
3,290,980	+				-0.9
3,290,981	-				-2.1
3,290,981	-				+2.7
3,290,981	-				+0.0
3,290,981	-				-1.7
3,290,981	-				+0.2
3,291,056	+				-0.9
3,291,057	-				-2.7
3,291,058	+				-0.0
3,291,058	+				+0.1
3,291,058	+				-0.1
3,291,058	+				-3.3
3,291,058	+				-1.0
3,291,058	+				+1.4
3,291,058	+				+0.7
3,291,058	+				-0.8
3,291,058	+				-1.4
3,291,058	+				+0.3
3,291,059	-				-0.4
3,291,059	-				+1.5
3,291,059	-				-0.3
3,291,059	-				-1.6
3,291,059	-				-0.6
3,291,059	-				-1.2
3,291,059	-				-1.1
3,291,059	-				-1.1
3,291,059	-				-0.0
3,291,059	-				-0.0
3,291,122	+				+0.9
3,291,123	-				-0.1
3,291,228	+		ABIE40_RS16525	0.27	+1.6
3,291,229	-		ABIE40_RS16525	0.27	+0.2
3,291,229	-		ABIE40_RS16525	0.27	+0.8
3,291,229	-		ABIE40_RS16525	0.27	-0.5
3,291,229	-		ABIE40_RS16525	0.27	-0.9
3,291,229	-		ABIE40_RS16525	0.27	-0.5
3,291,229	-		ABIE40_RS16525	0.27	-0.9
3,291,348	+		ABIE40_RS16525	0.62	+2.4
3,291,348	+		ABIE40_RS16525	0.62	-1.7
3,291,348	+		ABIE40_RS16525	0.62	-1.7
3,291,348	+		ABIE40_RS16525	0.62	-1.4
3,291,349	-		ABIE40_RS16525	0.63	-0.9
3,291,349	-		ABIE40_RS16525	0.63	+0.8
3,291,389	-		ABIE40_RS16525	0.74	-0.4
3,291,401	-		ABIE40_RS16525	0.78	-2.0
3,291,446	+				+1.8
3,291,453	+				-0.6
3,291,454	-				-0.5
3,291,454	-				-1.0
3,291,454	-				+0.2
3,291,454	-				-0.6
3,291,454	-				+1.3
3,291,462	+				-1.0
3,291,462	+				-1.9
3,291,462	+				-0.6
3,291,463	-				-1.4
3,291,463	-				-2.7
3,291,463	-				-0.2
3,291,470	+				-0.0
3,291,470	+				-1.4
3,291,471	-				-0.3
3,291,471	-				+1.7
3,291,555	+		ABIE40_RS16530	0.17	-0.6
3,291,555	+		ABIE40_RS16530	0.17	-0.7
3,291,556	-		ABIE40_RS16530	0.17	-0.8
3,291,556	-		ABIE40_RS16530	0.17	+0.2
3,291,556	-		ABIE40_RS16530	0.17	-0.2
3,291,622	+		ABIE40_RS16530	0.33	+0.4
3,291,641	+		ABIE40_RS16530	0.38	+1.3
3,291,643	-		ABIE40_RS16530	0.39	-0.2
3,291,643	-		ABIE40_RS16530	0.39	+0.2
3,291,644	+		ABIE40_RS16530	0.39	+0.6
3,291,644	+		ABIE40_RS16530	0.39	-1.3
3,291,644	+		ABIE40_RS16530	0.39	-0.6
3,291,644	+		ABIE40_RS16530	0.39	-0.4
3,291,644	+		ABIE40_RS16530	0.39	+0.5
3,291,644	+		ABIE40_RS16530	0.39	+0.0
3,291,645	-		ABIE40_RS16530	0.39	-0.6
3,291,645	-		ABIE40_RS16530	0.39	-0.3
3,291,645	-		ABIE40_RS16530	0.39	+0.1
3,291,663	+		ABIE40_RS16530	0.44	-1.3
3,291,663	+		ABIE40_RS16530	0.44	-1.3
3,291,663	+		ABIE40_RS16530	0.44	+0.5
3,291,663	+		ABIE40_RS16530	0.44	-0.3
3,291,702	+		ABIE40_RS16530	0.53	-1.0
3,291,703	-		ABIE40_RS16530	0.53	+0.0
3,291,703	-		ABIE40_RS16530	0.53	-0.1
3,291,703	-		ABIE40_RS16530	0.53	-0.1
3,291,749	-		ABIE40_RS16530	0.65	-1.1
3,291,968	-				+1.7
3,292,064	+		ABIE40_RS16535	0.14	+0.3
3,292,064	+		ABIE40_RS16535	0.14	-2.2
3,292,065	-		ABIE40_RS16535	0.14	-0.7
3,292,065	-		ABIE40_RS16535	0.14	+0.0
3,292,065	-		ABIE40_RS16535	0.14	-2.0
3,292,065	-		ABIE40_RS16535	0.14	+0.3
3,292,065	-		ABIE40_RS16535	0.14	-1.3
3,292,195	-		ABIE40_RS16535	0.24	-0.8
3,292,195	-		ABIE40_RS16535	0.24	-0.6
3,292,236	+		ABIE40_RS16535	0.28	-0.6
3,292,236	+		ABIE40_RS16535	0.28	-1.0
3,292,236	+		ABIE40_RS16535	0.28	+0.3
3,292,236	+		ABIE40_RS16535	0.28	+0.4
3,292,236	+		ABIE40_RS16535	0.28	-0.9
3,292,237	-		ABIE40_RS16535	0.28	-0.5
3,292,237	-		ABIE40_RS16535	0.28	-0.5
3,292,237	-		ABIE40_RS16535	0.28	+0.2
3,292,237	-		ABIE40_RS16535	0.28	-2.4
3,292,237	-		ABIE40_RS16535	0.28	-0.8
3,292,237	-		ABIE40_RS16535	0.28	-0.3
3,292,237	-		ABIE40_RS16535	0.28	+0.1
3,292,237	-		ABIE40_RS16535	0.28	-0.9
3,292,238	+		ABIE40_RS16535	0.28	-1.8
3,292,238	+		ABIE40_RS16535	0.28	+0.3
3,292,238	+		ABIE40_RS16535	0.28	-1.3
3,292,238	+		ABIE40_RS16535	0.28	-1.6
3,292,239	-		ABIE40_RS16535	0.28	-2.4
3,292,239	-		ABIE40_RS16535	0.28	-1.7
3,292,239	-		ABIE40_RS16535	0.28	+0.4
3,292,290	+		ABIE40_RS16535	0.32	-0.5
3,292,290	+		ABIE40_RS16535	0.32	+2.0
3,292,290	+		ABIE40_RS16535	0.32	+1.8
3,292,290	+		ABIE40_RS16535	0.32	+1.7
3,292,290	+		ABIE40_RS16535	0.32	-0.8
3,292,291	-		ABIE40_RS16535	0.32	-0.7
3,292,291	-		ABIE40_RS16535	0.32	-1.8
3,292,291	-		ABIE40_RS16535	0.32	+0.4
3,292,291	-		ABIE40_RS16535	0.32	-1.1
3,292,292	+		ABIE40_RS16535	0.32	+0.2
3,292,292	+		ABIE40_RS16535	0.32	-0.2
3,292,292	+		ABIE40_RS16535	0.32	-0.3
3,292,292	+		ABIE40_RS16535	0.32	-0.3
3,292,292	+		ABIE40_RS16535	0.32	-0.5
3,292,293	-		ABIE40_RS16535	0.32	-1.0
3,292,458	+		ABIE40_RS16535	0.45	-0.5
3,292,571	+		ABIE40_RS16535	0.54	+0.3
3,292,571	+		ABIE40_RS16535	0.54	-1.5
3,292,571	+		ABIE40_RS16535	0.54	-1.0
3,292,571	+		ABIE40_RS16535	0.54	+1.7
3,292,660	-		ABIE40_RS16535	0.61	-0.5
3,292,660	-		ABIE40_RS16535	0.61	-0.0
3,292,676	+		ABIE40_RS16535	0.63	-1.3
3,292,676	+		ABIE40_RS16535	0.63	+0.1
3,292,676	+		ABIE40_RS16535	0.63	-1.7
3,292,677	-		ABIE40_RS16535	0.63	-3.3
3,292,677	-		ABIE40_RS16535	0.63	-2.9
3,292,677	-		ABIE40_RS16535	0.63	-0.4
3,292,721	+		ABIE40_RS16535	0.66	+0.6
3,292,722	-		ABIE40_RS16535	0.66	-0.3
3,292,768	+		ABIE40_RS16535	0.70	-1.0
3,292,768	+		ABIE40_RS16535	0.70	-2.0
3,292,768	+		ABIE40_RS16535	0.70	-0.0
3,292,769	-		ABIE40_RS16535	0.70	+0.3
3,292,805	+		ABIE40_RS16535	0.73	-1.1
3,292,805	+		ABIE40_RS16535	0.73	-0.5
3,292,806	-		ABIE40_RS16535	0.73	-1.1
3,292,817	+		ABIE40_RS16535	0.74	+0.9
3,292,817	+		ABIE40_RS16535	0.74	+1.8
3,292,817	+		ABIE40_RS16535	0.74	+0.1
3,292,817	+		ABIE40_RS16535	0.74	-0.1
3,292,818	-		ABIE40_RS16535	0.74	+1.5
3,292,818	-		ABIE40_RS16535	0.74	+0.0
3,292,818	-		ABIE40_RS16535	0.74	+1.3
3,292,818	-		ABIE40_RS16535	0.74	-1.8
3,292,865	+		ABIE40_RS16535	0.78	-0.5
3,292,865	+		ABIE40_RS16535	0.78	+0.2
3,292,865	+		ABIE40_RS16535	0.78	-0.7
3,292,865	+		ABIE40_RS16535	0.78	-1.1
3,292,865	+		ABIE40_RS16535	0.78	-0.3
3,292,866	-		ABIE40_RS16535	0.78	-1.8
3,292,866	-		ABIE40_RS16535	0.78	-0.9
3,292,866	-		ABIE40_RS16535	0.78	+0.5
3,292,866	-		ABIE40_RS16535	0.78	-0.4
3,292,866	-		ABIE40_RS16535	0.78	+0.5
3,292,886	+		ABIE40_RS16535	0.80	+0.2
3,292,886	+		ABIE40_RS16535	0.80	-1.2
3,292,886	+		ABIE40_RS16535	0.80	+1.7
3,292,886	+		ABIE40_RS16535	0.80	-0.3
3,292,887	-		ABIE40_RS16535	0.80	-0.1
3,292,887	-		ABIE40_RS16535	0.80	-0.3
3,292,887	-		ABIE40_RS16535	0.80	-0.8