Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS13945

Experiment: L-Threonine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Threonine (C)
2,722,899	+				-1.3
2,722,900	-				-0.9
2,722,914	+				-1.0
2,722,914	+				-0.5
2,722,914	+				+1.5
2,722,914	+				-0.2
2,722,914	+				+0.1
2,722,914	+				-0.2
2,722,914	+				-1.4
2,722,914	+				+2.3
2,722,914	+				-0.3
2,722,914	+				-0.7
2,722,915	-				-2.6
2,722,915	-				+0.4
2,722,915	-				-0.4
2,722,915	-				-1.6
2,722,915	-				-0.9
2,722,915	-				+0.3
2,722,915	-				-0.6
2,722,915	-				-1.2
2,722,962	-		ABIE40_RS13935	0.19	+0.3
2,722,971	+		ABIE40_RS13935	0.23	-1.1
2,722,971	+		ABIE40_RS13935	0.23	-0.3
2,722,971	+		ABIE40_RS13935	0.23	+1.2
2,722,971	+		ABIE40_RS13935	0.23	-1.4
2,722,971	+		ABIE40_RS13935	0.23	-1.5
2,722,972	-		ABIE40_RS13935	0.23	+2.5
2,722,972	-		ABIE40_RS13935	0.23	-0.7
2,722,972	-		ABIE40_RS13935	0.23	-1.3
2,722,972	-		ABIE40_RS13935	0.23	-1.3
2,723,060	-		ABIE40_RS13935	0.59	+0.6
2,723,060	-		ABIE40_RS13935	0.59	+0.6
2,723,068	+		ABIE40_RS13935	0.62	-0.3
2,723,068	+		ABIE40_RS13935	0.62	-1.7
2,723,068	+		ABIE40_RS13935	0.62	+0.2
2,723,068	+		ABIE40_RS13935	0.62	-0.0
2,723,068	+		ABIE40_RS13935	0.62	-0.6
2,723,068	+		ABIE40_RS13935	0.62	-1.3
2,723,068	+		ABIE40_RS13935	0.62	-0.4
2,723,069	-		ABIE40_RS13935	0.63	+0.4
2,723,069	-		ABIE40_RS13935	0.63	-1.7
2,723,069	-		ABIE40_RS13935	0.63	-2.2
2,723,069	-		ABIE40_RS13935	0.63	-1.4
2,723,069	-		ABIE40_RS13935	0.63	+0.7
2,723,069	-		ABIE40_RS13935	0.63	+2.0
2,723,069	-		ABIE40_RS13935	0.63	-0.1
2,723,069	-		ABIE40_RS13935	0.63	-0.3
2,723,069	-		ABIE40_RS13935	0.63	+0.5
2,723,070	+		ABIE40_RS13935	0.63	-2.3
2,723,070	+		ABIE40_RS13935	0.63	-1.2
2,723,070	+		ABIE40_RS13935	0.63	-0.1
2,723,070	+		ABIE40_RS13935	0.63	-2.7
2,723,071	-		ABIE40_RS13935	0.63	-0.3
2,723,071	-		ABIE40_RS13935	0.63	+1.5
2,723,071	-		ABIE40_RS13935	0.63	-0.6
2,723,071	-		ABIE40_RS13935	0.63	-2.1
2,723,071	-		ABIE40_RS13935	0.63	+0.6
2,723,071	-		ABIE40_RS13935	0.63	-2.9
2,723,197	+				+1.0
2,723,197	+				+0.3
2,723,248	+		ABIE40_RS13940	0.17	-0.4
2,723,310	+		ABIE40_RS13940	0.30	-0.8
2,723,480	+		ABIE40_RS13940	0.64	-1.3
2,723,480	+		ABIE40_RS13940	0.64	+0.9
2,723,480	+		ABIE40_RS13940	0.64	-0.2
2,723,481	-		ABIE40_RS13940	0.64	-1.9
2,723,481	-		ABIE40_RS13940	0.64	-1.3
2,723,481	-		ABIE40_RS13940	0.64	-0.8
2,723,723	+				-0.2
2,723,762	+				+0.7
2,723,762	+				+0.6
2,723,762	+				+1.0
2,723,762	+				+1.9
2,723,763	-				+0.8
2,723,816	+				+0.7
2,723,816	+				+0.8
2,723,817	-				+0.5
2,723,979	+		ABIE40_RS13945	0.26	+0.5
2,724,015	+		ABIE40_RS13945	0.29	+1.7
2,724,015	+		ABIE40_RS13945	0.29	+0.8
2,724,016	-		ABIE40_RS13945	0.29	+0.8
2,724,016	-		ABIE40_RS13945	0.29	+0.7
2,724,042	+		ABIE40_RS13945	0.32	+2.0
2,724,043	-		ABIE40_RS13945	0.32	+0.6
2,724,068	+		ABIE40_RS13945	0.34	-0.4
2,724,068	+		ABIE40_RS13945	0.34	+1.7
2,724,068	+		ABIE40_RS13945	0.34	+0.9
2,724,069	-		ABIE40_RS13945	0.35	+0.5
2,724,069	-		ABIE40_RS13945	0.35	+2.0
2,724,262	+		ABIE40_RS13945	0.54	+1.1
2,724,262	+		ABIE40_RS13945	0.54	+0.5
2,724,497	+		ABIE40_RS13945	0.77	+1.1
2,724,498	-		ABIE40_RS13945	0.77	+0.5
2,724,499	+		ABIE40_RS13945	0.77	+1.5
2,724,500	-		ABIE40_RS13945	0.77	-3.0
2,724,500	-		ABIE40_RS13945	0.77	+0.2
2,724,692	+				+0.8
2,724,791	-				-1.1
2,724,806	+				+1.1
2,724,807	-				-0.1
2,724,807	-				-2.3
2,724,812	-				-0.2
2,724,822	+				-0.0
2,724,823	-				-0.5
2,724,824	+				-1.4
2,724,825	-				-1.3
2,724,834	+				+0.5
2,724,894	+				+0.3
2,724,894	+				+0.9
2,724,894	+				-0.6
2,724,895	+				-0.6
2,724,895	-				+1.1
2,724,895	-				-1.3
2,724,895	-				-1.1
2,724,918	+				+1.1
2,724,919	-				+1.5
2,724,919	-				-1.4
2,724,922	+				-0.2
2,724,922	+				-0.1
2,724,923	-				-0.4
2,724,923	-				-0.9
2,724,931	+				-0.3
2,724,931	+				-0.2
2,724,932	-				-0.8
2,724,980	+				+1.1
2,724,980	+				+1.9
2,724,981	-				-2.2
2,724,983	+				-0.5
2,724,983	+				-0.3
2,724,984	-				-0.0
2,725,011	+				+1.0
2,725,058	+				-0.9
2,725,059	-				-0.9
2,725,189	+		ABIE40_RS13950	0.18	-0.1
2,725,190	-		ABIE40_RS13950	0.18	-1.7
2,725,339	+		ABIE40_RS13950	0.32	-1.0
2,725,340	-		ABIE40_RS13950	0.32	+0.3
2,725,340	-		ABIE40_RS13950	0.32	-0.8
2,725,375	+		ABIE40_RS13950	0.35	-1.3
2,725,376	-		ABIE40_RS13950	0.35	-0.1
2,725,378	+		ABIE40_RS13950	0.35	-1.4
2,725,378	+		ABIE40_RS13950	0.35	-0.5
2,725,378	+		ABIE40_RS13950	0.35	-1.2
2,725,378	+		ABIE40_RS13950	0.35	-0.3
2,725,379	-		ABIE40_RS13950	0.36	-0.9
2,725,379	-		ABIE40_RS13950	0.36	-1.8
2,725,379	-		ABIE40_RS13950	0.36	+0.1
2,725,379	-		ABIE40_RS13950	0.36	-0.7
2,725,379	-		ABIE40_RS13950	0.36	+0.3
2,725,513	+		ABIE40_RS13950	0.48	-1.0
2,725,519	+		ABIE40_RS13950	0.49	-0.7
2,725,519	+		ABIE40_RS13950	0.49	+0.3
2,725,519	+		ABIE40_RS13950	0.49	+3.1
2,725,519	+		ABIE40_RS13950	0.49	-0.9
2,725,519	+		ABIE40_RS13950	0.49	-0.5
2,725,519	+		ABIE40_RS13950	0.49	-0.9
2,725,519	+		ABIE40_RS13950	0.49	-1.1
2,725,520	-		ABIE40_RS13950	0.49	+0.4
2,725,520	-		ABIE40_RS13950	0.49	+0.1
2,725,520	-		ABIE40_RS13950	0.49	-2.3
2,725,520	-		ABIE40_RS13950	0.49	-0.5
2,725,549	+		ABIE40_RS13950	0.52	-2.0
2,725,549	+		ABIE40_RS13950	0.52	-2.9
2,725,549	+		ABIE40_RS13950	0.52	-2.0
2,725,549	+		ABIE40_RS13950	0.52	+0.1
2,725,549	+		ABIE40_RS13950	0.52	-0.8
2,725,550	-		ABIE40_RS13950	0.52	-1.6
2,725,550	-		ABIE40_RS13950	0.52	-2.4
2,725,550	-		ABIE40_RS13950	0.52	-0.6
2,725,550	-		ABIE40_RS13950	0.52	-2.8
2,725,550	-		ABIE40_RS13950	0.52	-3.1
2,725,550	-		ABIE40_RS13950	0.52	-0.8
2,725,550	-		ABIE40_RS13950	0.52	-1.6
2,725,574	+		ABIE40_RS13950	0.54	-3.0
2,725,574	+		ABIE40_RS13950	0.54	-1.2
2,725,575	-		ABIE40_RS13950	0.54	-0.3
2,725,669	+		ABIE40_RS13950	0.63	-1.2
2,725,669	+		ABIE40_RS13950	0.63	-2.9
2,725,669	+		ABIE40_RS13950	0.63	-1.4
2,725,670	-		ABIE40_RS13950	0.63	-1.1
2,725,670	-		ABIE40_RS13950	0.63	-0.8
2,725,705	+		ABIE40_RS13950	0.66	-2.4
2,725,705	+		ABIE40_RS13950	0.66	-0.5
2,725,705	+		ABIE40_RS13950	0.66	-2.4