Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS04035 and ABIE40_RS04040 are separated by 103 nucleotides ABIE40_RS04040 and ABIE40_RS04045 are separated by 6 nucleotides ABIE40_RS04045 and ABIE40_RS04050 are separated by 17 nucleotides
ABIE40_RS04035: ABIE40_RS04035 - aldehyde reductase, at 801,109 to 802,140
_RS04035
ABIE40_RS04040: ABIE40_RS04040 - pyrophosphatase, at 802,244 to 802,543
_RS04040
ABIE40_RS04045: ABIE40_RS04045 - GNAT family N-acetyltransferase, at 802,550 to 803,041
_RS04045
ABIE40_RS04050: ABIE40_RS04050 - metalloprotease TldD, at 803,059 to 804,474
_RS04050
Position (kb) 802
803 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 801.346 kb on + strand, within ABIE40_RS04035 at 801.346 kb on + strand, within ABIE40_RS04035 at 801.346 kb on + strand, within ABIE40_RS04035 at 801.346 kb on + strand, within ABIE40_RS04035 at 801.346 kb on + strand, within ABIE40_RS04035 at 801.346 kb on + strand, within ABIE40_RS04035 at 801.346 kb on + strand, within ABIE40_RS04035 at 801.346 kb on + strand, within ABIE40_RS04035 at 801.346 kb on + strand, within ABIE40_RS04035 at 801.346 kb on + strand, within ABIE40_RS04035 at 801.346 kb on + strand, within ABIE40_RS04035 at 801.346 kb on + strand, within ABIE40_RS04035 at 801.346 kb on + strand, within ABIE40_RS04035 at 801.346 kb on + strand, within ABIE40_RS04035 at 801.346 kb on + strand, within ABIE40_RS04035 at 801.347 kb on - strand, within ABIE40_RS04035 at 801.347 kb on - strand, within ABIE40_RS04035 at 801.347 kb on - strand, within ABIE40_RS04035 at 801.347 kb on - strand, within ABIE40_RS04035 at 801.347 kb on - strand, within ABIE40_RS04035 at 801.347 kb on - strand, within ABIE40_RS04035 at 801.580 kb on + strand, within ABIE40_RS04035 at 801.679 kb on + strand, within ABIE40_RS04035 at 801.680 kb on - strand, within ABIE40_RS04035 at 802.018 kb on + strand, within ABIE40_RS04035 at 802.018 kb on + strand, within ABIE40_RS04035 at 802.018 kb on + strand, within ABIE40_RS04035 at 802.018 kb on + strand, within ABIE40_RS04035 at 802.195 kb on + strand at 802.195 kb on + strand at 802.196 kb on - strand at 802.196 kb on - strand at 802.196 kb on - strand at 802.196 kb on - strand at 802.196 kb on - strand at 802.226 kb on + strand at 802.244 kb on - strand at 802.290 kb on - strand, within ABIE40_RS04040 at 802.542 kb on - strand at 802.610 kb on + strand, within ABIE40_RS04045 at 802.610 kb on + strand, within ABIE40_RS04045 at 802.610 kb on + strand, within ABIE40_RS04045 at 802.611 kb on - strand, within ABIE40_RS04045 at 803.084 kb on - strand at 803.276 kb on + strand, within ABIE40_RS04050 at 803.276 kb on + strand, within ABIE40_RS04050 at 803.277 kb on - strand, within ABIE40_RS04050 at 803.277 kb on - strand, within ABIE40_RS04050 at 803.348 kb on + strand, within ABIE40_RS04050 at 803.349 kb on - strand, within ABIE40_RS04050 at 803.408 kb on + strand, within ABIE40_RS04050 at 803.408 kb on + strand, within ABIE40_RS04050 at 803.408 kb on + strand, within ABIE40_RS04050 at 803.408 kb on + strand, within ABIE40_RS04050 at 803.408 kb on + strand, within ABIE40_RS04050 at 803.408 kb on + strand, within ABIE40_RS04050 at 803.408 kb on + strand, within ABIE40_RS04050 at 803.408 kb on + strand, within ABIE40_RS04050 at 803.409 kb on - strand, within ABIE40_RS04050 at 803.409 kb on - strand, within ABIE40_RS04050 at 803.409 kb on - strand, within ABIE40_RS04050 at 803.409 kb on - strand, within ABIE40_RS04050 at 803.409 kb on - strand, within ABIE40_RS04050 at 803.409 kb on - strand, within ABIE40_RS04050 at 803.409 kb on - strand, within ABIE40_RS04050 at 803.409 kb on - strand, within ABIE40_RS04050 at 803.409 kb on - strand, within ABIE40_RS04050 at 803.409 kb on - strand, within ABIE40_RS04050 at 803.409 kb on - strand, within ABIE40_RS04050 at 803.409 kb on - strand, within ABIE40_RS04050 at 803.409 kb on - strand, within ABIE40_RS04050 at 803.409 kb on - strand, within ABIE40_RS04050 at 803.444 kb on + strand, within ABIE40_RS04050 at 803.445 kb on - strand, within ABIE40_RS04050 at 803.513 kb on + strand, within ABIE40_RS04050 at 803.513 kb on + strand, within ABIE40_RS04050
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 801,346 + ABIE40_RS04035 0.23 +0.1 801,346 + ABIE40_RS04035 0.23 +0.5 801,346 + ABIE40_RS04035 0.23 -0.0 801,346 + ABIE40_RS04035 0.23 -0.4 801,346 + ABIE40_RS04035 0.23 +1.7 801,346 + ABIE40_RS04035 0.23 +0.4 801,346 + ABIE40_RS04035 0.23 +1.5 801,346 + ABIE40_RS04035 0.23 -0.5 801,346 + ABIE40_RS04035 0.23 -0.5 801,346 + ABIE40_RS04035 0.23 -0.2 801,346 + ABIE40_RS04035 0.23 +0.5 801,346 + ABIE40_RS04035 0.23 -1.2 801,346 + ABIE40_RS04035 0.23 -1.1 801,346 + ABIE40_RS04035 0.23 -0.4 801,346 + ABIE40_RS04035 0.23 +1.6 801,347 - ABIE40_RS04035 0.23 +0.4 801,347 - ABIE40_RS04035 0.23 +0.3 801,347 - ABIE40_RS04035 0.23 +0.0 801,347 - ABIE40_RS04035 0.23 -0.9 801,347 - ABIE40_RS04035 0.23 +0.7 801,347 - ABIE40_RS04035 0.23 +1.7 801,580 + ABIE40_RS04035 0.46 +1.0 801,679 + ABIE40_RS04035 0.55 -2.1 801,680 - ABIE40_RS04035 0.55 -1.0 802,018 + ABIE40_RS04035 0.88 +0.4 802,018 + ABIE40_RS04035 0.88 +0.0 802,018 + ABIE40_RS04035 0.88 +1.7 802,018 + ABIE40_RS04035 0.88 -0.5 802,195 + +1.2 802,195 + +0.7 802,196 - -0.4 802,196 - +0.0 802,196 - -0.5 802,196 - -0.3 802,196 - -0.9 802,226 + -2.0 802,244 - -1.4 802,290 - ABIE40_RS04040 0.15 -0.2 802,542 - -0.7 802,610 + ABIE40_RS04045 0.12 -0.4 802,610 + ABIE40_RS04045 0.12 -3.5 802,610 + ABIE40_RS04045 0.12 -0.3 802,611 - ABIE40_RS04045 0.12 +0.7 803,084 - -0.8 803,276 + ABIE40_RS04050 0.15 -0.0 803,276 + ABIE40_RS04050 0.15 -1.8 803,277 - ABIE40_RS04050 0.15 +0.5 803,277 - ABIE40_RS04050 0.15 +0.7 803,348 + ABIE40_RS04050 0.20 -2.1 803,349 - ABIE40_RS04050 0.20 +0.0 803,408 + ABIE40_RS04050 0.25 +0.4 803,408 + ABIE40_RS04050 0.25 +1.4 803,408 + ABIE40_RS04050 0.25 +1.3 803,408 + ABIE40_RS04050 0.25 -1.4 803,408 + ABIE40_RS04050 0.25 -1.7 803,408 + ABIE40_RS04050 0.25 -1.2 803,408 + ABIE40_RS04050 0.25 -2.1 803,408 + ABIE40_RS04050 0.25 -0.7 803,409 - ABIE40_RS04050 0.25 -2.2 803,409 - ABIE40_RS04050 0.25 +0.1 803,409 - ABIE40_RS04050 0.25 +0.4 803,409 - ABIE40_RS04050 0.25 -0.1 803,409 - ABIE40_RS04050 0.25 -0.7 803,409 - ABIE40_RS04050 0.25 +0.3 803,409 - ABIE40_RS04050 0.25 +0.7 803,409 - ABIE40_RS04050 0.25 -0.0 803,409 - ABIE40_RS04050 0.25 +0.1 803,409 - ABIE40_RS04050 0.25 -1.3 803,409 - ABIE40_RS04050 0.25 +0.1 803,409 - ABIE40_RS04050 0.25 +0.4 803,409 - ABIE40_RS04050 0.25 -0.5 803,409 - ABIE40_RS04050 0.25 +0.2 803,444 + ABIE40_RS04050 0.27 -0.6 803,445 - ABIE40_RS04050 0.27 -1.1 803,513 + ABIE40_RS04050 0.32 -1.7 803,513 + ABIE40_RS04050 0.32 -1.8
Or see this region's nucleotide sequence