Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS04005 and ABIE40_RS04010 are separated by 241 nucleotides ABIE40_RS04010 and ABIE40_RS04015 are separated by 66 nucleotides ABIE40_RS04015 and ABIE40_RS04020 are separated by 4 nucleotides
ABIE40_RS04005: ABIE40_RS04005 - DnaJ C-terminal domain-containing protein, at 794,834 to 796,036
_RS04005
ABIE40_RS04010: ABIE40_RS04010 - RT0821/Lpp0805 family surface protein, at 796,278 to 796,736
_RS04010
ABIE40_RS04015: ABIE40_RS04015 - pyridoxamine 5'-phosphate oxidase, at 796,803 to 797,423
_RS04015
ABIE40_RS04020: ABIE40_RS04020 - polysaccharide deacetylase family protein, at 797,428 to 798,474
_RS04020
Position (kb) 796
797
798 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 796.016 kb on + strand at 796.016 kb on + strand at 796.016 kb on + strand at 796.017 kb on - strand at 796.017 kb on - strand at 796.021 kb on + strand at 796.021 kb on + strand at 796.021 kb on + strand at 796.021 kb on + strand at 796.021 kb on + strand at 796.021 kb on + strand at 796.021 kb on + strand at 796.021 kb on + strand at 796.022 kb on - strand at 796.022 kb on - strand at 796.022 kb on - strand at 796.022 kb on - strand at 796.022 kb on - strand at 796.022 kb on - strand at 796.022 kb on - strand at 796.022 kb on - strand at 796.022 kb on - strand at 796.022 kb on - strand at 796.022 kb on - strand at 796.022 kb on - strand at 796.022 kb on - strand at 796.022 kb on - strand at 796.022 kb on - strand at 796.022 kb on - strand at 796.022 kb on - strand at 796.022 kb on - strand at 796.023 kb on + strand at 796.023 kb on + strand at 796.023 kb on + strand at 796.023 kb on + strand at 796.023 kb on + strand at 796.024 kb on - strand at 796.024 kb on - strand at 796.024 kb on - strand at 796.024 kb on - strand at 796.036 kb on + strand at 796.036 kb on + strand at 796.037 kb on - strand at 796.037 kb on - strand at 796.039 kb on + strand at 796.039 kb on + strand at 796.040 kb on - strand at 796.040 kb on - strand at 796.091 kb on + strand at 796.091 kb on + strand at 796.091 kb on + strand at 796.092 kb on - strand at 796.092 kb on - strand at 796.136 kb on - strand at 796.164 kb on - strand at 796.174 kb on + strand at 796.215 kb on - strand at 796.226 kb on - strand at 796.252 kb on + strand at 796.255 kb on + strand at 796.255 kb on + strand at 796.255 kb on + strand at 796.255 kb on + strand at 796.256 kb on - strand at 796.256 kb on - strand at 796.256 kb on - strand at 796.261 kb on + strand at 796.261 kb on + strand at 796.261 kb on + strand at 796.261 kb on + strand at 796.261 kb on + strand at 796.261 kb on + strand at 796.261 kb on + strand at 796.261 kb on + strand at 796.261 kb on + strand at 796.261 kb on + strand at 796.262 kb on - strand at 796.262 kb on - strand at 796.262 kb on - strand at 796.262 kb on - strand at 796.262 kb on - strand at 796.262 kb on - strand at 796.262 kb on - strand at 796.262 kb on - strand at 796.262 kb on - strand at 796.262 kb on - strand at 796.262 kb on - strand at 796.262 kb on - strand at 796.363 kb on + strand, within ABIE40_RS04010 at 796.364 kb on - strand, within ABIE40_RS04010 at 796.364 kb on - strand, within ABIE40_RS04010 at 796.364 kb on - strand, within ABIE40_RS04010 at 796.364 kb on - strand, within ABIE40_RS04010 at 796.364 kb on - strand, within ABIE40_RS04010 at 796.544 kb on + strand, within ABIE40_RS04010 at 796.706 kb on + strand at 796.706 kb on + strand at 796.706 kb on + strand at 796.707 kb on - strand at 796.707 kb on - strand at 796.707 kb on - strand at 796.707 kb on - strand at 796.707 kb on - strand at 796.707 kb on - strand at 796.725 kb on + strand at 796.725 kb on + strand at 796.726 kb on - strand at 796.726 kb on - strand at 796.777 kb on + strand at 796.799 kb on + strand at 796.799 kb on + strand at 796.799 kb on + strand at 796.802 kb on + strand at 796.802 kb on + strand at 796.802 kb on + strand at 796.802 kb on + strand at 796.802 kb on + strand at 796.802 kb on + strand at 796.802 kb on + strand at 797.477 kb on + strand at 797.477 kb on + strand at 797.477 kb on + strand at 797.478 kb on - strand at 797.478 kb on - strand at 797.478 kb on - strand at 797.492 kb on + strand at 797.522 kb on + strand at 797.522 kb on + strand at 797.522 kb on + strand at 797.583 kb on + strand, within ABIE40_RS04020 at 797.584 kb on - strand, within ABIE40_RS04020 at 797.686 kb on + strand, within ABIE40_RS04020 at 797.687 kb on - strand, within ABIE40_RS04020 at 797.687 kb on - strand, within ABIE40_RS04020 at 797.687 kb on - strand, within ABIE40_RS04020 at 797.687 kb on - strand, within ABIE40_RS04020 at 797.687 kb on - strand, within ABIE40_RS04020 at 797.764 kb on - strand, within ABIE40_RS04020 at 797.948 kb on + strand, within ABIE40_RS04020 at 797.949 kb on - strand, within ABIE40_RS04020 at 797.953 kb on + strand, within ABIE40_RS04020 at 797.964 kb on + strand, within ABIE40_RS04020 at 798.058 kb on - strand, within ABIE40_RS04020 at 798.058 kb on - strand, within ABIE40_RS04020 at 798.058 kb on - strand, within ABIE40_RS04020 at 798.242 kb on + strand, within ABIE40_RS04020 at 798.333 kb on - strand, within ABIE40_RS04020 at 798.355 kb on - strand, within ABIE40_RS04020
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 796,016 + +0.4 796,016 + +0.8 796,016 + +1.6 796,017 - +1.0 796,017 - +1.6 796,021 + +1.4 796,021 + -0.2 796,021 + -0.5 796,021 + +1.2 796,021 + +0.2 796,021 + -2.8 796,021 + +1.1 796,021 + +0.7 796,022 - +1.0 796,022 - +1.1 796,022 - +1.2 796,022 - -2.0 796,022 - +1.1 796,022 - +0.2 796,022 - +1.6 796,022 - -1.5 796,022 - +3.4 796,022 - +0.3 796,022 - +1.1 796,022 - +0.2 796,022 - +1.0 796,022 - +0.2 796,022 - +1.4 796,022 - +1.3 796,022 - +1.5 796,022 - -0.3 796,023 + +1.1 796,023 + +0.3 796,023 + +1.7 796,023 + +1.3 796,023 + +1.2 796,024 - -0.2 796,024 - -0.9 796,024 - +1.2 796,024 - +0.5 796,036 + -0.1 796,036 + -0.7 796,037 - -0.7 796,037 - +2.5 796,039 + +2.0 796,039 + -1.7 796,040 - +0.8 796,040 - +0.1 796,091 + +3.3 796,091 + -2.0 796,091 + +2.5 796,092 - -0.1 796,092 - +0.5 796,136 - -0.4 796,164 - -2.4 796,174 + -1.4 796,215 - +1.0 796,226 - +1.2 796,252 + +0.1 796,255 + +0.0 796,255 + -0.6 796,255 + +0.3 796,255 + -0.3 796,256 - -0.6 796,256 - +0.4 796,256 - -0.1 796,261 + -0.1 796,261 + -0.4 796,261 + +0.2 796,261 + -0.3 796,261 + +0.2 796,261 + +0.3 796,261 + -1.1 796,261 + +0.3 796,261 + +0.7 796,261 + -3.3 796,262 - -1.8 796,262 - +1.4 796,262 - -1.8 796,262 - +0.0 796,262 - +0.1 796,262 - +0.3 796,262 - -2.3 796,262 - -2.0 796,262 - -1.8 796,262 - +0.7 796,262 - -0.3 796,262 - -2.6 796,363 + ABIE40_RS04010 0.19 -0.6 796,364 - ABIE40_RS04010 0.19 -0.3 796,364 - ABIE40_RS04010 0.19 -0.3 796,364 - ABIE40_RS04010 0.19 -0.1 796,364 - ABIE40_RS04010 0.19 +1.1 796,364 - ABIE40_RS04010 0.19 -1.2 796,544 + ABIE40_RS04010 0.58 +1.7 796,706 + +0.0 796,706 + +1.3 796,706 + +0.4 796,707 - +0.9 796,707 - +0.3 796,707 - +0.7 796,707 - +0.7 796,707 - -1.5 796,707 - -1.3 796,725 + -0.1 796,725 + -1.7 796,726 - -2.0 796,726 - +1.3 796,777 + -0.7 796,799 + +0.3 796,799 + +1.7 796,799 + -2.0 796,802 + -3.3 796,802 + -1.2 796,802 + -0.7 796,802 + +0.4 796,802 + +0.4 796,802 + +0.0 796,802 + -0.2 797,477 + -1.2 797,477 + +0.9 797,477 + +0.8 797,478 - -0.2 797,478 - +0.8 797,478 - -0.0 797,492 + -0.4 797,522 + -0.0 797,522 + +0.2 797,522 + +0.4 797,583 + ABIE40_RS04020 0.15 -0.3 797,584 - ABIE40_RS04020 0.15 -0.1 797,686 + ABIE40_RS04020 0.25 -2.4 797,687 - ABIE40_RS04020 0.25 +1.7 797,687 - ABIE40_RS04020 0.25 -2.6 797,687 - ABIE40_RS04020 0.25 +0.4 797,687 - ABIE40_RS04020 0.25 +0.1 797,687 - ABIE40_RS04020 0.25 +0.7 797,764 - ABIE40_RS04020 0.32 +0.5 797,948 + ABIE40_RS04020 0.50 +0.0 797,949 - ABIE40_RS04020 0.50 +0.6 797,953 + ABIE40_RS04020 0.50 -0.2 797,964 + ABIE40_RS04020 0.51 +0.7 798,058 - ABIE40_RS04020 0.60 -1.8 798,058 - ABIE40_RS04020 0.60 -0.7 798,058 - ABIE40_RS04020 0.60 -1.4 798,242 + ABIE40_RS04020 0.78 +0.1 798,333 - ABIE40_RS04020 0.86 +0.2 798,355 - ABIE40_RS04020 0.89 -0.5
Or see this region's nucleotide sequence