Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS03885

Experiment: L-Threonine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE40_RS03880 and ABIE40_RS03885 overlap by 4 nucleotidesABIE40_RS03885 and ABIE40_RS03890 are separated by 122 nucleotides ABIE40_RS03880: ABIE40_RS03880 - class I SAM-dependent RNA methyltransferase, at 770,345 to 771,595 _RS03880 ABIE40_RS03885: ABIE40_RS03885 - TlyA family RNA methyltransferase, at 771,592 to 772,338 _RS03885 ABIE40_RS03890: ABIE40_RS03890 - DUF4424 domain-containing protein, at 772,461 to 773,468 _RS03890 Position (kb) 771 772 773Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 771.053 kb on - strand, within ABIE40_RS03880at 771.053 kb on - strand, within ABIE40_RS03880at 771.053 kb on - strand, within ABIE40_RS03880at 771.053 kb on - strand, within ABIE40_RS03880at 771.516 kb on + strandat 771.516 kb on + strandat 771.516 kb on + strandat 771.516 kb on + strandat 771.516 kb on + strandat 771.516 kb on + strandat 771.516 kb on + strandat 771.517 kb on - strandat 771.517 kb on - strandat 771.517 kb on - strandat 771.517 kb on - strandat 771.517 kb on - strandat 771.601 kb on + strandat 771.601 kb on + strandat 771.602 kb on - strandat 771.613 kb on + strandat 771.613 kb on + strandat 771.613 kb on + strandat 771.614 kb on - strandat 771.614 kb on - strandat 771.614 kb on - strandat 771.614 kb on - strandat 771.617 kb on + strandat 771.617 kb on + strandat 771.618 kb on - strandat 771.618 kb on - strandat 771.618 kb on - strandat 771.618 kb on - strandat 771.618 kb on - strandat 771.943 kb on + strand, within ABIE40_RS03885at 771.943 kb on + strand, within ABIE40_RS03885at 771.943 kb on + strand, within ABIE40_RS03885at 771.943 kb on + strand, within ABIE40_RS03885at 771.943 kb on + strand, within ABIE40_RS03885at 771.944 kb on - strand, within ABIE40_RS03885at 771.944 kb on - strand, within ABIE40_RS03885at 771.944 kb on - strand, within ABIE40_RS03885at 771.944 kb on - strand, within ABIE40_RS03885at 771.944 kb on - strand, within ABIE40_RS03885at 771.944 kb on - strand, within ABIE40_RS03885at 771.945 kb on + strand, within ABIE40_RS03885at 771.945 kb on + strand, within ABIE40_RS03885at 771.945 kb on + strand, within ABIE40_RS03885at 771.945 kb on + strand, within ABIE40_RS03885at 771.945 kb on + strand, within ABIE40_RS03885at 772.047 kb on + strand, within ABIE40_RS03885at 772.048 kb on - strand, within ABIE40_RS03885at 772.151 kb on + strand, within ABIE40_RS03885at 772.151 kb on + strand, within ABIE40_RS03885at 772.152 kb on - strand, within ABIE40_RS03885at 772.152 kb on - strand, within ABIE40_RS03885at 772.152 kb on - strand, within ABIE40_RS03885at 772.152 kb on - strand, within ABIE40_RS03885at 772.152 kb on - strand, within ABIE40_RS03885at 772.152 kb on - strand, within ABIE40_RS03885at 772.152 kb on - strand, within ABIE40_RS03885at 772.152 kb on - strand, within ABIE40_RS03885at 772.152 kb on - strand, within ABIE40_RS03885at 772.422 kb on - strandat 772.529 kb on + strandat 772.529 kb on + strandat 772.530 kb on - strandat 772.635 kb on + strand, within ABIE40_RS03890at 772.636 kb on - strand, within ABIE40_RS03890at 772.636 kb on - strand, within ABIE40_RS03890at 772.636 kb on - strand, within ABIE40_RS03890at 772.636 kb on - strand, within ABIE40_RS03890at 772.636 kb on - strand, within ABIE40_RS03890at 772.636 kb on - strand, within ABIE40_RS03890at 772.966 kb on - strand, within ABIE40_RS03890at 773.028 kb on + strand, within ABIE40_RS03890at 773.029 kb on - strand, within ABIE40_RS03890at 773.029 kb on - strand, within ABIE40_RS03890at 773.029 kb on - strand, within ABIE40_RS03890at 773.082 kb on + strand, within ABIE40_RS03890at 773.160 kb on + strand, within ABIE40_RS03890at 773.161 kb on - strand, within ABIE40_RS03890at 773.162 kb on + strand, within ABIE40_RS03890at 773.162 kb on + strand, within ABIE40_RS03890at 773.162 kb on + strand, within ABIE40_RS03890at 773.162 kb on + strand, within ABIE40_RS03890at 773.162 kb on + strand, within ABIE40_RS03890at 773.162 kb on + strand, within ABIE40_RS03890at 773.162 kb on + strand, within ABIE40_RS03890at 773.162 kb on + strand, within ABIE40_RS03890at 773.163 kb on - strand, within ABIE40_RS03890at 773.163 kb on - strand, within ABIE40_RS03890at 773.163 kb on - strand, within ABIE40_RS03890at 773.163 kb on - strand, within ABIE40_RS03890at 773.163 kb on - strand, within ABIE40_RS03890at 773.163 kb on - strand, within ABIE40_RS03890at 773.163 kb on - strand, within ABIE40_RS03890at 773.163 kb on - strand, within ABIE40_RS03890at 773.172 kb on + strand, within ABIE40_RS03890at 773.244 kb on + strand, within ABIE40_RS03890at 773.244 kb on + strand, within ABIE40_RS03890at 773.245 kb on - strand, within ABIE40_RS03890at 773.265 kb on + strand, within ABIE40_RS03890at 773.265 kb on + strand, within ABIE40_RS03890at 773.266 kb on - strand, within ABIE40_RS03890at 773.266 kb on - strand, within ABIE40_RS03890at 773.266 kb on - strand, within ABIE40_RS03890at 773.328 kb on - strand, within ABIE40_RS03890

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
remove
771,053 - ABIE40_RS03880 0.57 +1.0
771,053 - ABIE40_RS03880 0.57 -2.0
771,053 - ABIE40_RS03880 0.57 +0.4
771,053 - ABIE40_RS03880 0.57 -1.1
771,516 + -0.6
771,516 + -0.6
771,516 + -1.6
771,516 + -0.9
771,516 + +0.5
771,516 + +1.6
771,516 + +0.4
771,517 - -0.3
771,517 - +0.4
771,517 - +0.8
771,517 - -0.9
771,517 - -0.2
771,601 + -0.3
771,601 + +0.6
771,602 - -0.2
771,613 + -1.7
771,613 + -2.2
771,613 + -0.2
771,614 - +0.4
771,614 - -0.2
771,614 - -1.3
771,614 - -1.9
771,617 + -0.6
771,617 + +0.5
771,618 - +0.4
771,618 - -1.5
771,618 - +0.5
771,618 - +1.7
771,618 - -0.7
771,943 + ABIE40_RS03885 0.47 -0.7
771,943 + ABIE40_RS03885 0.47 -2.5
771,943 + ABIE40_RS03885 0.47 -1.1
771,943 + ABIE40_RS03885 0.47 +0.3
771,943 + ABIE40_RS03885 0.47 +0.1
771,944 - ABIE40_RS03885 0.47 +0.0
771,944 - ABIE40_RS03885 0.47 +1.2
771,944 - ABIE40_RS03885 0.47 -0.3
771,944 - ABIE40_RS03885 0.47 -0.5
771,944 - ABIE40_RS03885 0.47 +0.0
771,944 - ABIE40_RS03885 0.47 +0.7
771,945 + ABIE40_RS03885 0.47 -0.9
771,945 + ABIE40_RS03885 0.47 -1.1
771,945 + ABIE40_RS03885 0.47 -3.1
771,945 + ABIE40_RS03885 0.47 +0.5
771,945 + ABIE40_RS03885 0.47 -0.1
772,047 + ABIE40_RS03885 0.61 -0.7
772,048 - ABIE40_RS03885 0.61 -1.1
772,151 + ABIE40_RS03885 0.75 +0.2
772,151 + ABIE40_RS03885 0.75 +1.7
772,152 - ABIE40_RS03885 0.75 +0.1
772,152 - ABIE40_RS03885 0.75 -0.4
772,152 - ABIE40_RS03885 0.75 +2.6
772,152 - ABIE40_RS03885 0.75 +0.7
772,152 - ABIE40_RS03885 0.75 +0.4
772,152 - ABIE40_RS03885 0.75 +0.4
772,152 - ABIE40_RS03885 0.75 -0.6
772,152 - ABIE40_RS03885 0.75 -1.3
772,152 - ABIE40_RS03885 0.75 -0.4
772,422 - -0.3
772,529 + +0.2
772,529 + -0.9
772,530 - -0.1
772,635 + ABIE40_RS03890 0.17 +0.0
772,636 - ABIE40_RS03890 0.17 -0.5
772,636 - ABIE40_RS03890 0.17 -0.7
772,636 - ABIE40_RS03890 0.17 -0.0
772,636 - ABIE40_RS03890 0.17 -3.6
772,636 - ABIE40_RS03890 0.17 -2.8
772,636 - ABIE40_RS03890 0.17 +1.8
772,966 - ABIE40_RS03890 0.50 +0.8
773,028 + ABIE40_RS03890 0.56 -1.6
773,029 - ABIE40_RS03890 0.56 -0.1
773,029 - ABIE40_RS03890 0.56 -0.3
773,029 - ABIE40_RS03890 0.56 +0.4
773,082 + ABIE40_RS03890 0.62 +1.9
773,160 + ABIE40_RS03890 0.69 +1.6
773,161 - ABIE40_RS03890 0.69 +1.3
773,162 + ABIE40_RS03890 0.70 -0.3
773,162 + ABIE40_RS03890 0.70 +0.4
773,162 + ABIE40_RS03890 0.70 +0.6
773,162 + ABIE40_RS03890 0.70 +0.4
773,162 + ABIE40_RS03890 0.70 +1.9
773,162 + ABIE40_RS03890 0.70 -1.3
773,162 + ABIE40_RS03890 0.70 +0.1
773,162 + ABIE40_RS03890 0.70 +0.3
773,163 - ABIE40_RS03890 0.70 +0.2
773,163 - ABIE40_RS03890 0.70 +0.5
773,163 - ABIE40_RS03890 0.70 +0.7
773,163 - ABIE40_RS03890 0.70 -1.1
773,163 - ABIE40_RS03890 0.70 -1.9
773,163 - ABIE40_RS03890 0.70 -0.1
773,163 - ABIE40_RS03890 0.70 -0.4
773,163 - ABIE40_RS03890 0.70 -0.1
773,172 + ABIE40_RS03890 0.71 +0.2
773,244 + ABIE40_RS03890 0.78 +0.6
773,244 + ABIE40_RS03890 0.78 -0.9
773,245 - ABIE40_RS03890 0.78 -1.5
773,265 + ABIE40_RS03890 0.80 -0.9
773,265 + ABIE40_RS03890 0.80 -1.6
773,266 - ABIE40_RS03890 0.80 +0.0
773,266 - ABIE40_RS03890 0.80 +0.4
773,266 - ABIE40_RS03890 0.80 +0.3
773,328 - ABIE40_RS03890 0.86 -1.6

Or see this region's nucleotide sequence