Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS03800 and ABIE40_RS03805 are separated by 13 nucleotides ABIE40_RS03805 and ABIE40_RS03810 are separated by 101 nucleotides ABIE40_RS03810 and ABIE40_RS03815 are separated by 71 nucleotides ABIE40_RS03815 and ABIE40_RS03820 are separated by 312 nucleotides
ABIE40_RS03800: ABIE40_RS03800 - HAD family hydrolase, at 751,380 to 752,099
_RS03800
ABIE40_RS03805: ABIE40_RS03805 - GNAT family protein, at 752,113 to 752,709
_RS03805
ABIE40_RS03810: ABIE40_RS03810 - 4-hydroxybenzoate octaprenyltransferase, at 752,811 to 753,770
_RS03810
ABIE40_RS03815: ABIE40_RS03815 - DUF6101 family protein, at 753,842 to 754,408
_RS03815
ABIE40_RS03820: ABIE40_RS03820 - DUF1217 domain-containing protein, at 754,721 to 757,552
_RS03820
Position (kb) 752
753
754 Strain fitness (log2 ratio) -2
-1
0
1
2 at 751.818 kb on + strand, within ABIE40_RS03800 at 751.818 kb on + strand, within ABIE40_RS03800 at 751.818 kb on + strand, within ABIE40_RS03800 at 751.818 kb on + strand, within ABIE40_RS03800 at 751.819 kb on - strand, within ABIE40_RS03800 at 751.819 kb on - strand, within ABIE40_RS03800 at 751.819 kb on - strand, within ABIE40_RS03800 at 751.827 kb on + strand, within ABIE40_RS03800 at 751.828 kb on - strand, within ABIE40_RS03800 at 751.828 kb on - strand, within ABIE40_RS03800 at 751.840 kb on - strand, within ABIE40_RS03800 at 751.955 kb on + strand, within ABIE40_RS03800 at 751.955 kb on + strand, within ABIE40_RS03800 at 751.956 kb on - strand, within ABIE40_RS03800 at 752.041 kb on - strand at 752.041 kb on - strand at 752.041 kb on - strand at 752.097 kb on + strand at 752.098 kb on - strand at 752.098 kb on - strand at 752.112 kb on + strand at 752.112 kb on + strand at 752.112 kb on + strand at 752.112 kb on + strand at 752.112 kb on + strand at 752.112 kb on + strand at 752.112 kb on + strand at 752.113 kb on - strand at 752.113 kb on - strand at 752.113 kb on - strand at 752.113 kb on - strand at 752.113 kb on - strand at 752.113 kb on - strand at 752.113 kb on - strand at 752.113 kb on - strand at 752.281 kb on + strand, within ABIE40_RS03805 at 752.281 kb on + strand, within ABIE40_RS03805 at 752.281 kb on + strand, within ABIE40_RS03805 at 752.281 kb on + strand, within ABIE40_RS03805 at 752.281 kb on + strand, within ABIE40_RS03805 at 752.281 kb on + strand, within ABIE40_RS03805 at 752.281 kb on + strand, within ABIE40_RS03805 at 752.281 kb on + strand, within ABIE40_RS03805 at 752.281 kb on + strand, within ABIE40_RS03805 at 752.281 kb on + strand, within ABIE40_RS03805 at 752.282 kb on - strand, within ABIE40_RS03805 at 752.282 kb on - strand, within ABIE40_RS03805 at 752.282 kb on - strand, within ABIE40_RS03805 at 752.282 kb on - strand, within ABIE40_RS03805 at 752.415 kb on + strand, within ABIE40_RS03805 at 752.416 kb on - strand, within ABIE40_RS03805 at 752.482 kb on + strand, within ABIE40_RS03805 at 752.483 kb on - strand, within ABIE40_RS03805 at 752.790 kb on + strand at 752.790 kb on + strand at 752.790 kb on + strand at 752.800 kb on + strand at 752.800 kb on + strand at 752.800 kb on + strand at 752.800 kb on + strand at 752.800 kb on + strand at 753.856 kb on + strand at 753.856 kb on + strand at 753.942 kb on + strand, within ABIE40_RS03815 at 753.942 kb on + strand, within ABIE40_RS03815 at 753.943 kb on - strand, within ABIE40_RS03815 at 754.228 kb on + strand, within ABIE40_RS03815 at 754.419 kb on - strand at 754.476 kb on + strand at 754.477 kb on - strand at 754.490 kb on - strand at 754.490 kb on - strand at 754.586 kb on + strand at 754.654 kb on - strand at 754.685 kb on - strand at 754.685 kb on - strand at 754.696 kb on + strand at 754.742 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 751,818 + ABIE40_RS03800 0.61 -0.4 751,818 + ABIE40_RS03800 0.61 -0.1 751,818 + ABIE40_RS03800 0.61 -0.3 751,818 + ABIE40_RS03800 0.61 -0.3 751,819 - ABIE40_RS03800 0.61 -1.2 751,819 - ABIE40_RS03800 0.61 -0.9 751,819 - ABIE40_RS03800 0.61 +0.4 751,827 + ABIE40_RS03800 0.62 -1.0 751,828 - ABIE40_RS03800 0.62 +0.3 751,828 - ABIE40_RS03800 0.62 -1.4 751,840 - ABIE40_RS03800 0.64 -0.3 751,955 + ABIE40_RS03800 0.80 -0.0 751,955 + ABIE40_RS03800 0.80 -0.7 751,956 - ABIE40_RS03800 0.80 -0.3 752,041 - -0.8 752,041 - -0.4 752,041 - -0.5 752,097 + -0.5 752,098 - +0.6 752,098 - -0.2 752,112 + +0.3 752,112 + +0.0 752,112 + +1.5 752,112 + -0.8 752,112 + -1.2 752,112 + +1.0 752,112 + +0.8 752,113 - -1.0 752,113 - +0.4 752,113 - +0.2 752,113 - -2.4 752,113 - +0.3 752,113 - -2.5 752,113 - -0.3 752,113 - -2.7 752,281 + ABIE40_RS03805 0.28 -2.5 752,281 + ABIE40_RS03805 0.28 -0.1 752,281 + ABIE40_RS03805 0.28 +0.1 752,281 + ABIE40_RS03805 0.28 +0.1 752,281 + ABIE40_RS03805 0.28 -0.9 752,281 + ABIE40_RS03805 0.28 -0.1 752,281 + ABIE40_RS03805 0.28 +0.6 752,281 + ABIE40_RS03805 0.28 -1.4 752,281 + ABIE40_RS03805 0.28 -0.2 752,281 + ABIE40_RS03805 0.28 +0.3 752,282 - ABIE40_RS03805 0.28 -1.9 752,282 - ABIE40_RS03805 0.28 +0.6 752,282 - ABIE40_RS03805 0.28 -0.9 752,282 - ABIE40_RS03805 0.28 -0.6 752,415 + ABIE40_RS03805 0.51 +0.3 752,416 - ABIE40_RS03805 0.51 -0.3 752,482 + ABIE40_RS03805 0.62 +0.6 752,483 - ABIE40_RS03805 0.62 -0.5 752,790 + +1.7 752,790 + -1.2 752,790 + +1.2 752,800 + -2.4 752,800 + +0.5 752,800 + +1.7 752,800 + +0.3 752,800 + +1.2 753,856 + -1.4 753,856 + -0.8 753,942 + ABIE40_RS03815 0.18 -1.0 753,942 + ABIE40_RS03815 0.18 -1.7 753,943 - ABIE40_RS03815 0.18 -2.1 754,228 + ABIE40_RS03815 0.68 +1.7 754,419 - +2.0 754,476 + +0.3 754,477 - -1.1 754,490 - +0.0 754,490 - -1.5 754,586 + -1.7 754,654 - -1.7 754,685 - -0.7 754,685 - -2.5 754,696 + +0.3 754,742 + -0.2
Or see this region's nucleotide sequence