Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS03010 and ABIE40_RS03015 overlap by 4 nucleotides ABIE40_RS03015 and ABIE40_RS03020 are separated by 105 nucleotides ABIE40_RS03020 and ABIE40_RS03025 are separated by 392 nucleotides
ABIE40_RS03010: ABIE40_RS03010 - flagellar basal body-associated FliL family protein, at 592,180 to 592,698
_RS03010
ABIE40_RS03015: ABIE40_RS03015 - flagellar type III secretion system pore protein FliP, at 592,695 to 593,432
_RS03015
ABIE40_RS03020: ABIE40_RS03020 - glycosyl transferase, at 593,538 to 595,454
_RS03020
ABIE40_RS03025: ABIE40_RS03025 - flagellin, at 595,847 to 596,743
_RS03025
Position (kb) 593
594
595
596 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 592.548 kb on + strand, within ABIE40_RS03010 at 592.548 kb on + strand, within ABIE40_RS03010 at 592.549 kb on - strand, within ABIE40_RS03010 at 592.550 kb on + strand, within ABIE40_RS03010 at 592.550 kb on + strand, within ABIE40_RS03010 at 592.551 kb on - strand, within ABIE40_RS03010 at 592.551 kb on - strand, within ABIE40_RS03010 at 592.551 kb on - strand, within ABIE40_RS03010 at 592.551 kb on - strand, within ABIE40_RS03010 at 592.551 kb on - strand, within ABIE40_RS03010 at 592.551 kb on - strand, within ABIE40_RS03010 at 592.551 kb on - strand, within ABIE40_RS03010 at 592.551 kb on - strand, within ABIE40_RS03010 at 592.551 kb on - strand, within ABIE40_RS03010 at 592.559 kb on - strand, within ABIE40_RS03010 at 592.609 kb on + strand, within ABIE40_RS03010 at 592.609 kb on + strand, within ABIE40_RS03010 at 592.610 kb on - strand, within ABIE40_RS03010 at 592.614 kb on - strand, within ABIE40_RS03010 at 592.614 kb on - strand, within ABIE40_RS03010 at 592.661 kb on + strand at 592.709 kb on - strand at 592.781 kb on + strand, within ABIE40_RS03015 at 592.781 kb on + strand, within ABIE40_RS03015 at 592.820 kb on + strand, within ABIE40_RS03015 at 592.821 kb on - strand, within ABIE40_RS03015 at 592.821 kb on - strand, within ABIE40_RS03015 at 592.821 kb on - strand, within ABIE40_RS03015 at 592.937 kb on + strand, within ABIE40_RS03015 at 592.949 kb on + strand, within ABIE40_RS03015 at 592.949 kb on + strand, within ABIE40_RS03015 at 592.949 kb on + strand, within ABIE40_RS03015 at 592.950 kb on - strand, within ABIE40_RS03015 at 592.986 kb on + strand, within ABIE40_RS03015 at 592.986 kb on + strand, within ABIE40_RS03015 at 592.986 kb on + strand, within ABIE40_RS03015 at 592.986 kb on + strand, within ABIE40_RS03015 at 592.986 kb on + strand, within ABIE40_RS03015 at 592.986 kb on + strand, within ABIE40_RS03015 at 592.986 kb on + strand, within ABIE40_RS03015 at 592.986 kb on + strand, within ABIE40_RS03015 at 592.987 kb on - strand, within ABIE40_RS03015 at 592.987 kb on - strand, within ABIE40_RS03015 at 592.987 kb on - strand, within ABIE40_RS03015 at 593.196 kb on + strand, within ABIE40_RS03015 at 593.321 kb on + strand, within ABIE40_RS03015 at 593.321 kb on + strand, within ABIE40_RS03015 at 593.321 kb on + strand, within ABIE40_RS03015 at 593.321 kb on + strand, within ABIE40_RS03015 at 593.322 kb on - strand, within ABIE40_RS03015 at 593.322 kb on - strand, within ABIE40_RS03015 at 593.430 kb on + strand at 593.430 kb on + strand at 593.430 kb on + strand at 593.431 kb on - strand at 593.431 kb on - strand at 593.539 kb on + strand at 593.539 kb on + strand at 593.539 kb on + strand at 593.539 kb on + strand at 593.540 kb on - strand at 593.540 kb on - strand at 593.689 kb on + strand at 593.689 kb on + strand at 593.690 kb on - strand at 593.690 kb on - strand at 593.690 kb on - strand at 593.690 kb on - strand at 593.690 kb on - strand at 593.690 kb on - strand at 593.716 kb on + strand at 593.716 kb on + strand at 593.716 kb on + strand at 593.716 kb on + strand at 593.717 kb on - strand at 593.717 kb on - strand at 593.717 kb on - strand at 593.759 kb on + strand, within ABIE40_RS03020 at 593.768 kb on - strand, within ABIE40_RS03020 at 593.768 kb on - strand, within ABIE40_RS03020 at 593.951 kb on + strand, within ABIE40_RS03020 at 593.960 kb on + strand, within ABIE40_RS03020 at 593.960 kb on + strand, within ABIE40_RS03020 at 593.960 kb on + strand, within ABIE40_RS03020 at 593.961 kb on - strand, within ABIE40_RS03020 at 593.961 kb on - strand, within ABIE40_RS03020 at 593.978 kb on + strand, within ABIE40_RS03020 at 593.979 kb on - strand, within ABIE40_RS03020 at 594.165 kb on + strand, within ABIE40_RS03020 at 594.165 kb on + strand, within ABIE40_RS03020 at 594.166 kb on - strand, within ABIE40_RS03020 at 594.166 kb on - strand, within ABIE40_RS03020 at 594.191 kb on - strand, within ABIE40_RS03020 at 594.248 kb on - strand, within ABIE40_RS03020 at 594.248 kb on - strand, within ABIE40_RS03020 at 594.248 kb on - strand, within ABIE40_RS03020 at 594.281 kb on - strand, within ABIE40_RS03020 at 594.328 kb on + strand, within ABIE40_RS03020 at 594.328 kb on + strand, within ABIE40_RS03020 at 594.329 kb on - strand, within ABIE40_RS03020 at 594.329 kb on - strand, within ABIE40_RS03020 at 594.420 kb on - strand, within ABIE40_RS03020 at 594.420 kb on - strand, within ABIE40_RS03020 at 594.429 kb on - strand, within ABIE40_RS03020 at 594.458 kb on + strand, within ABIE40_RS03020 at 594.458 kb on + strand, within ABIE40_RS03020 at 594.562 kb on + strand, within ABIE40_RS03020 at 594.563 kb on - strand, within ABIE40_RS03020 at 594.563 kb on - strand, within ABIE40_RS03020 at 594.676 kb on + strand, within ABIE40_RS03020 at 594.677 kb on - strand, within ABIE40_RS03020 at 594.677 kb on - strand, within ABIE40_RS03020 at 594.677 kb on - strand, within ABIE40_RS03020 at 594.677 kb on - strand, within ABIE40_RS03020 at 594.677 kb on - strand, within ABIE40_RS03020 at 594.808 kb on + strand, within ABIE40_RS03020 at 594.808 kb on + strand, within ABIE40_RS03020 at 594.809 kb on - strand, within ABIE40_RS03020 at 594.809 kb on - strand, within ABIE40_RS03020 at 594.809 kb on - strand, within ABIE40_RS03020 at 594.895 kb on + strand, within ABIE40_RS03020 at 594.896 kb on - strand, within ABIE40_RS03020 at 594.896 kb on - strand, within ABIE40_RS03020 at 594.925 kb on + strand, within ABIE40_RS03020 at 594.925 kb on + strand, within ABIE40_RS03020 at 594.926 kb on - strand, within ABIE40_RS03020 at 595.108 kb on + strand, within ABIE40_RS03020 at 595.108 kb on + strand, within ABIE40_RS03020 at 595.108 kb on + strand, within ABIE40_RS03020 at 595.210 kb on + strand, within ABIE40_RS03020 at 595.234 kb on + strand, within ABIE40_RS03020 at 595.234 kb on + strand, within ABIE40_RS03020 at 595.234 kb on + strand, within ABIE40_RS03020 at 595.235 kb on - strand, within ABIE40_RS03020 at 595.235 kb on - strand, within ABIE40_RS03020 at 595.235 kb on - strand, within ABIE40_RS03020 at 595.235 kb on - strand, within ABIE40_RS03020 at 595.340 kb on - strand at 595.340 kb on - strand at 595.397 kb on + strand at 595.398 kb on - strand at 595.592 kb on + strand at 595.593 kb on - strand at 595.593 kb on - strand at 595.593 kb on - strand at 595.648 kb on + strand at 595.648 kb on + strand at 595.649 kb on - strand at 595.649 kb on - strand at 595.654 kb on + strand at 595.655 kb on - strand at 595.655 kb on - strand at 595.689 kb on - strand at 595.703 kb on + strand at 595.703 kb on + strand at 595.703 kb on + strand at 595.704 kb on - strand at 595.704 kb on - strand at 595.792 kb on - strand at 595.794 kb on + strand at 595.795 kb on - strand at 595.795 kb on - strand at 595.826 kb on + strand at 595.826 kb on + strand at 595.826 kb on + strand at 595.827 kb on - strand at 595.827 kb on - strand at 595.827 kb on - strand at 595.846 kb on + strand at 595.846 kb on + strand at 595.847 kb on - strand at 595.858 kb on + strand at 595.858 kb on + strand at 595.982 kb on + strand, within ABIE40_RS03025 at 595.982 kb on + strand, within ABIE40_RS03025 at 595.982 kb on + strand, within ABIE40_RS03025 at 595.983 kb on - strand, within ABIE40_RS03025 at 595.990 kb on + strand, within ABIE40_RS03025 at 596.333 kb on + strand, within ABIE40_RS03025 at 596.333 kb on + strand, within ABIE40_RS03025 at 596.360 kb on + strand, within ABIE40_RS03025 at 596.361 kb on - strand, within ABIE40_RS03025
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 592,548 + ABIE40_RS03010 0.71 -1.2 592,548 + ABIE40_RS03010 0.71 +0.7 592,549 - ABIE40_RS03010 0.71 -3.8 592,550 + ABIE40_RS03010 0.71 +0.2 592,550 + ABIE40_RS03010 0.71 -0.4 592,551 - ABIE40_RS03010 0.71 +0.2 592,551 - ABIE40_RS03010 0.71 -2.1 592,551 - ABIE40_RS03010 0.71 -0.4 592,551 - ABIE40_RS03010 0.71 +0.3 592,551 - ABIE40_RS03010 0.71 +1.1 592,551 - ABIE40_RS03010 0.71 -1.6 592,551 - ABIE40_RS03010 0.71 +0.6 592,551 - ABIE40_RS03010 0.71 +1.8 592,551 - ABIE40_RS03010 0.71 -1.6 592,559 - ABIE40_RS03010 0.73 +0.5 592,609 + ABIE40_RS03010 0.83 -0.3 592,609 + ABIE40_RS03010 0.83 +0.3 592,610 - ABIE40_RS03010 0.83 -1.0 592,614 - ABIE40_RS03010 0.84 -1.0 592,614 - ABIE40_RS03010 0.84 +0.6 592,661 + +0.8 592,709 - -1.5 592,781 + ABIE40_RS03015 0.12 -0.3 592,781 + ABIE40_RS03015 0.12 -0.1 592,820 + ABIE40_RS03015 0.17 -1.3 592,821 - ABIE40_RS03015 0.17 +0.1 592,821 - ABIE40_RS03015 0.17 -1.7 592,821 - ABIE40_RS03015 0.17 -1.3 592,937 + ABIE40_RS03015 0.33 -0.5 592,949 + ABIE40_RS03015 0.34 +0.6 592,949 + ABIE40_RS03015 0.34 -1.3 592,949 + ABIE40_RS03015 0.34 +1.7 592,950 - ABIE40_RS03015 0.35 +0.1 592,986 + ABIE40_RS03015 0.39 +2.8 592,986 + ABIE40_RS03015 0.39 -0.7 592,986 + ABIE40_RS03015 0.39 +3.6 592,986 + ABIE40_RS03015 0.39 -1.1 592,986 + ABIE40_RS03015 0.39 -2.6 592,986 + ABIE40_RS03015 0.39 -1.4 592,986 + ABIE40_RS03015 0.39 +0.1 592,986 + ABIE40_RS03015 0.39 -1.4 592,987 - ABIE40_RS03015 0.40 +1.1 592,987 - ABIE40_RS03015 0.40 -0.7 592,987 - ABIE40_RS03015 0.40 +0.5 593,196 + ABIE40_RS03015 0.68 +0.5 593,321 + ABIE40_RS03015 0.85 -1.4 593,321 + ABIE40_RS03015 0.85 -1.0 593,321 + ABIE40_RS03015 0.85 -0.6 593,321 + ABIE40_RS03015 0.85 -1.6 593,322 - ABIE40_RS03015 0.85 +0.5 593,322 - ABIE40_RS03015 0.85 -3.1 593,430 + -2.2 593,430 + +0.4 593,430 + -0.0 593,431 - -1.7 593,431 - +0.0 593,539 + +0.5 593,539 + -0.7 593,539 + +0.1 593,539 + -0.1 593,540 - +0.5 593,540 - +0.1 593,689 + -0.4 593,689 + +0.9 593,690 - +0.9 593,690 - -1.0 593,690 - +1.6 593,690 - +0.8 593,690 - +0.6 593,690 - +4.4 593,716 + -1.1 593,716 + +1.3 593,716 + -0.0 593,716 + +0.3 593,717 - -0.4 593,717 - +0.8 593,717 - +1.1 593,759 + ABIE40_RS03020 0.12 +0.2 593,768 - ABIE40_RS03020 0.12 -0.7 593,768 - ABIE40_RS03020 0.12 +0.8 593,951 + ABIE40_RS03020 0.22 -0.5 593,960 + ABIE40_RS03020 0.22 +0.8 593,960 + ABIE40_RS03020 0.22 -0.1 593,960 + ABIE40_RS03020 0.22 +0.6 593,961 - ABIE40_RS03020 0.22 -0.4 593,961 - ABIE40_RS03020 0.22 -0.6 593,978 + ABIE40_RS03020 0.23 -0.3 593,979 - ABIE40_RS03020 0.23 -0.5 594,165 + ABIE40_RS03020 0.33 +1.1 594,165 + ABIE40_RS03020 0.33 -0.1 594,166 - ABIE40_RS03020 0.33 +0.6 594,166 - ABIE40_RS03020 0.33 -0.7 594,191 - ABIE40_RS03020 0.34 -2.8 594,248 - ABIE40_RS03020 0.37 -0.2 594,248 - ABIE40_RS03020 0.37 +0.9 594,248 - ABIE40_RS03020 0.37 -0.8 594,281 - ABIE40_RS03020 0.39 +1.3 594,328 + ABIE40_RS03020 0.41 -0.3 594,328 + ABIE40_RS03020 0.41 +0.7 594,329 - ABIE40_RS03020 0.41 +1.6 594,329 - ABIE40_RS03020 0.41 -0.2 594,420 - ABIE40_RS03020 0.46 -0.3 594,420 - ABIE40_RS03020 0.46 +1.1 594,429 - ABIE40_RS03020 0.46 +2.8 594,458 + ABIE40_RS03020 0.48 -0.4 594,458 + ABIE40_RS03020 0.48 +0.6 594,562 + ABIE40_RS03020 0.53 +2.0 594,563 - ABIE40_RS03020 0.53 -1.2 594,563 - ABIE40_RS03020 0.53 +0.1 594,676 + ABIE40_RS03020 0.59 -1.0 594,677 - ABIE40_RS03020 0.59 +0.3 594,677 - ABIE40_RS03020 0.59 +0.6 594,677 - ABIE40_RS03020 0.59 +0.1 594,677 - ABIE40_RS03020 0.59 +0.1 594,677 - ABIE40_RS03020 0.59 -1.0 594,808 + ABIE40_RS03020 0.66 +0.5 594,808 + ABIE40_RS03020 0.66 +0.8 594,809 - ABIE40_RS03020 0.66 -1.0 594,809 - ABIE40_RS03020 0.66 -0.2 594,809 - ABIE40_RS03020 0.66 -0.8 594,895 + ABIE40_RS03020 0.71 -0.9 594,896 - ABIE40_RS03020 0.71 +0.1 594,896 - ABIE40_RS03020 0.71 -1.0 594,925 + ABIE40_RS03020 0.72 -1.7 594,925 + ABIE40_RS03020 0.72 +0.1 594,926 - ABIE40_RS03020 0.72 -0.6 595,108 + ABIE40_RS03020 0.82 +0.6 595,108 + ABIE40_RS03020 0.82 +0.6 595,108 + ABIE40_RS03020 0.82 -1.9 595,210 + ABIE40_RS03020 0.87 +0.1 595,234 + ABIE40_RS03020 0.88 +0.0 595,234 + ABIE40_RS03020 0.88 +1.0 595,234 + ABIE40_RS03020 0.88 -1.3 595,235 - ABIE40_RS03020 0.89 -0.3 595,235 - ABIE40_RS03020 0.89 -1.0 595,235 - ABIE40_RS03020 0.89 -2.3 595,235 - ABIE40_RS03020 0.89 +1.8 595,340 - -1.4 595,340 - -1.0 595,397 + +1.0 595,398 - -0.5 595,592 + -0.2 595,593 - -0.8 595,593 - +0.1 595,593 - +0.2 595,648 + -0.3 595,648 + -0.6 595,649 - -0.1 595,649 - +0.1 595,654 + +0.2 595,655 - -0.9 595,655 - +0.5 595,689 - -1.5 595,703 + -0.2 595,703 + -0.1 595,703 + -2.1 595,704 - -1.0 595,704 - +0.8 595,792 - -1.3 595,794 + -0.6 595,795 - +0.6 595,795 - -0.1 595,826 + -1.0 595,826 + -0.9 595,826 + -1.0 595,827 - -0.5 595,827 - -2.6 595,827 - -1.8 595,846 + +0.8 595,846 + -0.4 595,847 - +2.1 595,858 + +0.5 595,858 + -0.5 595,982 + ABIE40_RS03025 0.15 -1.6 595,982 + ABIE40_RS03025 0.15 +0.1 595,982 + ABIE40_RS03025 0.15 -0.7 595,983 - ABIE40_RS03025 0.15 -0.3 595,990 + ABIE40_RS03025 0.16 -2.0 596,333 + ABIE40_RS03025 0.54 -0.6 596,333 + ABIE40_RS03025 0.54 -2.9 596,360 + ABIE40_RS03025 0.57 -2.3 596,361 - ABIE40_RS03025 0.57 -1.3
Or see this region's nucleotide sequence