Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS02675 and ABIE40_RS02680 are separated by 162 nucleotides ABIE40_RS02680 and ABIE40_RS02685 are separated by 35 nucleotides ABIE40_RS02685 and ABIE40_RS02690 are separated by 44 nucleotides ABIE40_RS02690 and ABIE40_RS02695 are separated by 221 nucleotides ABIE40_RS02695 and ABIE40_RS02700 overlap by 17 nucleotides
ABIE40_RS02675: ABIE40_RS02675 - hypothetical protein, at 534,614 to 534,751
_RS02675
ABIE40_RS02680: ABIE40_RS02680 - hypothetical protein, at 534,914 to 535,180
_RS02680
ABIE40_RS02685: ABIE40_RS02685 - hypothetical protein, at 535,216 to 535,455
_RS02685
ABIE40_RS02690: ABIE40_RS02690 - DUF982 domain-containing protein, at 535,500 to 535,742
_RS02690
ABIE40_RS02695: ABIE40_RS02695 - ImmA/IrrE family metallo-endopeptidase, at 535,964 to 536,464
_RS02695
ABIE40_RS02700: ABIE40_RS02700 - hypothetical protein, at 536,448 to 536,822
_RS02700
Position (kb) 535
536 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 534.548 kb on + strand at 534.549 kb on - strand at 534.549 kb on - strand at 534.549 kb on - strand at 534.576 kb on + strand at 534.615 kb on + strand at 534.616 kb on - strand at 534.616 kb on - strand at 534.619 kb on + strand at 534.619 kb on + strand at 534.619 kb on + strand at 534.620 kb on - strand at 534.698 kb on - strand, within ABIE40_RS02675 at 534.756 kb on - strand at 534.756 kb on - strand at 534.791 kb on + strand at 535.011 kb on - strand, within ABIE40_RS02680 at 535.013 kb on + strand, within ABIE40_RS02680 at 535.052 kb on + strand, within ABIE40_RS02680 at 535.052 kb on + strand, within ABIE40_RS02680 at 535.052 kb on + strand, within ABIE40_RS02680 at 535.052 kb on + strand, within ABIE40_RS02680 at 535.052 kb on + strand, within ABIE40_RS02680 at 535.052 kb on + strand, within ABIE40_RS02680 at 535.052 kb on + strand, within ABIE40_RS02680 at 535.053 kb on - strand, within ABIE40_RS02680 at 535.054 kb on + strand, within ABIE40_RS02680 at 535.091 kb on + strand, within ABIE40_RS02680 at 535.091 kb on + strand, within ABIE40_RS02680 at 535.092 kb on - strand, within ABIE40_RS02680 at 535.092 kb on - strand, within ABIE40_RS02680 at 535.142 kb on + strand, within ABIE40_RS02680 at 535.142 kb on + strand, within ABIE40_RS02680 at 535.236 kb on + strand at 535.236 kb on + strand at 535.236 kb on + strand at 535.237 kb on - strand at 535.289 kb on + strand, within ABIE40_RS02685 at 535.289 kb on + strand, within ABIE40_RS02685 at 535.289 kb on + strand, within ABIE40_RS02685 at 535.289 kb on + strand, within ABIE40_RS02685 at 535.290 kb on - strand, within ABIE40_RS02685 at 535.290 kb on - strand, within ABIE40_RS02685 at 535.321 kb on + strand, within ABIE40_RS02685 at 535.367 kb on + strand, within ABIE40_RS02685 at 535.368 kb on - strand, within ABIE40_RS02685 at 535.416 kb on + strand, within ABIE40_RS02685 at 535.501 kb on + strand at 535.501 kb on + strand at 535.501 kb on + strand at 535.502 kb on - strand at 535.502 kb on - strand at 535.502 kb on - strand at 535.595 kb on + strand, within ABIE40_RS02690 at 535.596 kb on - strand, within ABIE40_RS02690 at 535.612 kb on + strand, within ABIE40_RS02690 at 535.722 kb on - strand at 535.722 kb on - strand at 535.722 kb on - strand at 535.722 kb on - strand at 535.722 kb on - strand at 535.722 kb on - strand at 535.748 kb on + strand at 535.748 kb on + strand at 535.748 kb on + strand at 535.748 kb on + strand at 535.749 kb on - strand at 535.749 kb on - strand at 535.749 kb on - strand at 535.749 kb on - strand at 535.749 kb on - strand at 535.763 kb on + strand at 535.821 kb on + strand at 535.821 kb on + strand at 535.821 kb on + strand at 535.883 kb on + strand at 535.883 kb on + strand at 535.883 kb on + strand at 535.883 kb on + strand at 535.885 kb on + strand at 535.885 kb on + strand at 535.885 kb on + strand at 535.886 kb on - strand at 535.886 kb on - strand at 535.889 kb on + strand at 535.889 kb on + strand at 535.889 kb on + strand at 535.890 kb on - strand at 535.890 kb on - strand at 535.894 kb on + strand at 535.894 kb on + strand at 535.894 kb on + strand at 535.895 kb on - strand at 535.895 kb on - strand at 535.929 kb on + strand at 535.930 kb on - strand at 535.930 kb on - strand at 535.931 kb on + strand at 535.931 kb on + strand at 535.932 kb on - strand at 535.932 kb on - strand at 535.932 kb on - strand at 535.932 kb on - strand at 535.932 kb on - strand at 535.935 kb on + strand at 535.936 kb on - strand at 535.989 kb on - strand at 535.989 kb on - strand at 535.999 kb on - strand at 536.022 kb on + strand, within ABIE40_RS02695 at 536.023 kb on - strand, within ABIE40_RS02695 at 536.023 kb on - strand, within ABIE40_RS02695 at 536.023 kb on - strand, within ABIE40_RS02695 at 536.023 kb on - strand, within ABIE40_RS02695 at 536.023 kb on - strand, within ABIE40_RS02695 at 536.032 kb on - strand, within ABIE40_RS02695 at 536.032 kb on - strand, within ABIE40_RS02695 at 536.032 kb on - strand, within ABIE40_RS02695 at 536.032 kb on - strand, within ABIE40_RS02695 at 536.032 kb on - strand, within ABIE40_RS02695 at 536.032 kb on - strand, within ABIE40_RS02695 at 536.032 kb on - strand, within ABIE40_RS02695 at 536.032 kb on - strand, within ABIE40_RS02695 at 536.035 kb on + strand, within ABIE40_RS02695 at 536.035 kb on + strand, within ABIE40_RS02695 at 536.035 kb on + strand, within ABIE40_RS02695 at 536.036 kb on - strand, within ABIE40_RS02695 at 536.121 kb on - strand, within ABIE40_RS02695 at 536.126 kb on - strand, within ABIE40_RS02695 at 536.139 kb on - strand, within ABIE40_RS02695 at 536.139 kb on - strand, within ABIE40_RS02695 at 536.139 kb on - strand, within ABIE40_RS02695 at 536.181 kb on - strand, within ABIE40_RS02695 at 536.201 kb on - strand, within ABIE40_RS02695 at 536.201 kb on - strand, within ABIE40_RS02695 at 536.206 kb on - strand, within ABIE40_RS02695 at 536.262 kb on - strand, within ABIE40_RS02695 at 536.262 kb on - strand, within ABIE40_RS02695 at 536.262 kb on - strand, within ABIE40_RS02695 at 536.262 kb on - strand, within ABIE40_RS02695 at 536.262 kb on - strand, within ABIE40_RS02695 at 536.264 kb on - strand, within ABIE40_RS02695 at 536.264 kb on - strand, within ABIE40_RS02695 at 536.264 kb on - strand, within ABIE40_RS02695 at 536.264 kb on - strand, within ABIE40_RS02695 at 536.289 kb on - strand, within ABIE40_RS02695 at 536.366 kb on - strand, within ABIE40_RS02695 at 536.366 kb on - strand, within ABIE40_RS02695 at 536.366 kb on - strand, within ABIE40_RS02695 at 536.366 kb on - strand, within ABIE40_RS02695 at 536.370 kb on - strand, within ABIE40_RS02695 at 536.370 kb on - strand, within ABIE40_RS02695 at 536.370 kb on - strand, within ABIE40_RS02695 at 536.402 kb on - strand, within ABIE40_RS02695 at 536.402 kb on - strand, within ABIE40_RS02695 at 536.402 kb on - strand, within ABIE40_RS02695 at 536.402 kb on - strand, within ABIE40_RS02695 at 536.534 kb on + strand, within ABIE40_RS02700 at 536.535 kb on - strand, within ABIE40_RS02700 at 536.535 kb on - strand, within ABIE40_RS02700 at 536.535 kb on - strand, within ABIE40_RS02700 at 536.535 kb on - strand, within ABIE40_RS02700 at 536.535 kb on - strand, within ABIE40_RS02700 at 536.554 kb on + strand, within ABIE40_RS02700 at 536.555 kb on - strand, within ABIE40_RS02700 at 536.562 kb on - strand, within ABIE40_RS02700 at 536.562 kb on - strand, within ABIE40_RS02700 at 536.562 kb on - strand, within ABIE40_RS02700 at 536.573 kb on + strand, within ABIE40_RS02700 at 536.574 kb on - strand, within ABIE40_RS02700 at 536.591 kb on + strand, within ABIE40_RS02700 at 536.591 kb on + strand, within ABIE40_RS02700 at 536.591 kb on + strand, within ABIE40_RS02700 at 536.591 kb on + strand, within ABIE40_RS02700 at 536.592 kb on - strand, within ABIE40_RS02700 at 536.592 kb on - strand, within ABIE40_RS02700 at 536.592 kb on - strand, within ABIE40_RS02700 at 536.592 kb on - strand, within ABIE40_RS02700 at 536.655 kb on + strand, within ABIE40_RS02700 at 536.655 kb on + strand, within ABIE40_RS02700 at 536.655 kb on + strand, within ABIE40_RS02700 at 536.655 kb on + strand, within ABIE40_RS02700 at 536.655 kb on + strand, within ABIE40_RS02700 at 536.655 kb on + strand, within ABIE40_RS02700 at 536.655 kb on + strand, within ABIE40_RS02700 at 536.655 kb on + strand, within ABIE40_RS02700 at 536.655 kb on + strand, within ABIE40_RS02700 at 536.655 kb on + strand, within ABIE40_RS02700 at 536.655 kb on + strand, within ABIE40_RS02700 at 536.656 kb on - strand, within ABIE40_RS02700 at 536.656 kb on - strand, within ABIE40_RS02700 at 536.656 kb on - strand, within ABIE40_RS02700 at 536.656 kb on - strand, within ABIE40_RS02700 at 536.656 kb on - strand, within ABIE40_RS02700 at 536.656 kb on - strand, within ABIE40_RS02700 at 536.656 kb on - strand, within ABIE40_RS02700 at 536.686 kb on + strand, within ABIE40_RS02700 at 536.686 kb on + strand, within ABIE40_RS02700 at 536.687 kb on - strand, within ABIE40_RS02700 at 536.711 kb on + strand, within ABIE40_RS02700 at 536.711 kb on + strand, within ABIE40_RS02700 at 536.712 kb on - strand, within ABIE40_RS02700 at 536.721 kb on + strand, within ABIE40_RS02700 at 536.721 kb on + strand, within ABIE40_RS02700 at 536.721 kb on + strand, within ABIE40_RS02700
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 534,548 + +0.1 534,549 - -1.0 534,549 - -0.8 534,549 - -0.1 534,576 + +0.4 534,615 + -1.5 534,616 - -2.2 534,616 - -0.1 534,619 + -2.2 534,619 + -0.3 534,619 + -2.6 534,620 - -0.8 534,698 - ABIE40_RS02675 0.61 +0.1 534,756 - +0.0 534,756 - +2.7 534,791 + +0.1 535,011 - ABIE40_RS02680 0.36 +1.9 535,013 + ABIE40_RS02680 0.37 +0.4 535,052 + ABIE40_RS02680 0.52 +1.4 535,052 + ABIE40_RS02680 0.52 +0.2 535,052 + ABIE40_RS02680 0.52 +0.6 535,052 + ABIE40_RS02680 0.52 +1.5 535,052 + ABIE40_RS02680 0.52 -0.0 535,052 + ABIE40_RS02680 0.52 +0.3 535,052 + ABIE40_RS02680 0.52 -1.8 535,053 - ABIE40_RS02680 0.52 -0.6 535,054 + ABIE40_RS02680 0.52 +0.2 535,091 + ABIE40_RS02680 0.66 +1.7 535,091 + ABIE40_RS02680 0.66 -1.8 535,092 - ABIE40_RS02680 0.67 -0.7 535,092 - ABIE40_RS02680 0.67 -1.6 535,142 + ABIE40_RS02680 0.85 +0.3 535,142 + ABIE40_RS02680 0.85 -1.9 535,236 + -0.5 535,236 + +0.7 535,236 + +1.1 535,237 - +1.1 535,289 + ABIE40_RS02685 0.30 +0.2 535,289 + ABIE40_RS02685 0.30 +0.1 535,289 + ABIE40_RS02685 0.30 -0.7 535,289 + ABIE40_RS02685 0.30 -1.1 535,290 - ABIE40_RS02685 0.31 +1.1 535,290 - ABIE40_RS02685 0.31 +1.9 535,321 + ABIE40_RS02685 0.44 +0.8 535,367 + ABIE40_RS02685 0.63 -0.6 535,368 - ABIE40_RS02685 0.63 -2.9 535,416 + ABIE40_RS02685 0.83 -1.1 535,501 + +0.5 535,501 + -0.7 535,501 + -0.3 535,502 - +1.1 535,502 - -1.1 535,502 - +0.3 535,595 + ABIE40_RS02690 0.39 -1.3 535,596 - ABIE40_RS02690 0.40 -1.2 535,612 + ABIE40_RS02690 0.46 -2.4 535,722 - -0.2 535,722 - +0.4 535,722 - +1.2 535,722 - +0.0 535,722 - -0.7 535,722 - +0.7 535,748 + -0.6 535,748 + +0.7 535,748 + +0.7 535,748 + +0.1 535,749 - -0.6 535,749 - -0.2 535,749 - +1.8 535,749 - -1.7 535,749 - -0.0 535,763 + -1.0 535,821 + -0.9 535,821 + -0.2 535,821 + -2.0 535,883 + -0.3 535,883 + +0.2 535,883 + +1.9 535,883 + -0.9 535,885 + -0.4 535,885 + -0.5 535,885 + -1.0 535,886 - +0.3 535,886 - +0.6 535,889 + -0.0 535,889 + +0.3 535,889 + -0.7 535,890 - -0.7 535,890 - -2.6 535,894 + -0.9 535,894 + -0.4 535,894 + +0.4 535,895 - -1.0 535,895 - -0.6 535,929 + -0.5 535,930 - +0.4 535,930 - -0.4 535,931 + -0.5 535,931 + +0.4 535,932 - -0.1 535,932 - +1.0 535,932 - +0.6 535,932 - -2.3 535,932 - -2.4 535,935 + -1.3 535,936 - -2.8 535,989 - +2.4 535,989 - +1.0 535,999 - +0.0 536,022 + ABIE40_RS02695 0.12 +1.9 536,023 - ABIE40_RS02695 0.12 +0.4 536,023 - ABIE40_RS02695 0.12 +0.2 536,023 - ABIE40_RS02695 0.12 +1.8 536,023 - ABIE40_RS02695 0.12 -1.3 536,023 - ABIE40_RS02695 0.12 +0.9 536,032 - ABIE40_RS02695 0.14 -2.4 536,032 - ABIE40_RS02695 0.14 -0.7 536,032 - ABIE40_RS02695 0.14 +0.7 536,032 - ABIE40_RS02695 0.14 +0.9 536,032 - ABIE40_RS02695 0.14 -1.7 536,032 - ABIE40_RS02695 0.14 -0.8 536,032 - ABIE40_RS02695 0.14 +1.0 536,032 - ABIE40_RS02695 0.14 +0.3 536,035 + ABIE40_RS02695 0.14 -1.6 536,035 + ABIE40_RS02695 0.14 -1.7 536,035 + ABIE40_RS02695 0.14 -0.9 536,036 - ABIE40_RS02695 0.14 -0.7 536,121 - ABIE40_RS02695 0.31 -0.6 536,126 - ABIE40_RS02695 0.32 -2.1 536,139 - ABIE40_RS02695 0.35 -0.8 536,139 - ABIE40_RS02695 0.35 +0.8 536,139 - ABIE40_RS02695 0.35 -0.5 536,181 - ABIE40_RS02695 0.43 +0.9 536,201 - ABIE40_RS02695 0.47 -0.8 536,201 - ABIE40_RS02695 0.47 -1.5 536,206 - ABIE40_RS02695 0.48 -1.6 536,262 - ABIE40_RS02695 0.59 +0.4 536,262 - ABIE40_RS02695 0.59 -1.3 536,262 - ABIE40_RS02695 0.59 +0.6 536,262 - ABIE40_RS02695 0.59 -0.3 536,262 - ABIE40_RS02695 0.59 +0.3 536,264 - ABIE40_RS02695 0.60 -1.6 536,264 - ABIE40_RS02695 0.60 +0.3 536,264 - ABIE40_RS02695 0.60 -1.2 536,264 - ABIE40_RS02695 0.60 +0.7 536,289 - ABIE40_RS02695 0.65 +0.7 536,366 - ABIE40_RS02695 0.80 +1.5 536,366 - ABIE40_RS02695 0.80 -0.2 536,366 - ABIE40_RS02695 0.80 -1.1 536,366 - ABIE40_RS02695 0.80 +0.2 536,370 - ABIE40_RS02695 0.81 -1.7 536,370 - ABIE40_RS02695 0.81 +0.7 536,370 - ABIE40_RS02695 0.81 -0.6 536,402 - ABIE40_RS02695 0.87 -0.1 536,402 - ABIE40_RS02695 0.87 -2.4 536,402 - ABIE40_RS02695 0.87 +0.6 536,402 - ABIE40_RS02695 0.87 -2.5 536,534 + ABIE40_RS02700 0.23 -0.7 536,535 - ABIE40_RS02700 0.23 -0.7 536,535 - ABIE40_RS02700 0.23 -1.4 536,535 - ABIE40_RS02700 0.23 -2.1 536,535 - ABIE40_RS02700 0.23 +0.7 536,535 - ABIE40_RS02700 0.23 +0.6 536,554 + ABIE40_RS02700 0.28 -2.0 536,555 - ABIE40_RS02700 0.29 -0.5 536,562 - ABIE40_RS02700 0.30 -1.9 536,562 - ABIE40_RS02700 0.30 +0.4 536,562 - ABIE40_RS02700 0.30 +0.5 536,573 + ABIE40_RS02700 0.33 -0.3 536,574 - ABIE40_RS02700 0.34 -0.3 536,591 + ABIE40_RS02700 0.38 +0.5 536,591 + ABIE40_RS02700 0.38 -0.3 536,591 + ABIE40_RS02700 0.38 -1.7 536,591 + ABIE40_RS02700 0.38 +0.1 536,592 - ABIE40_RS02700 0.38 +0.3 536,592 - ABIE40_RS02700 0.38 -0.4 536,592 - ABIE40_RS02700 0.38 +0.2 536,592 - ABIE40_RS02700 0.38 -1.2 536,655 + ABIE40_RS02700 0.55 -1.8 536,655 + ABIE40_RS02700 0.55 +0.7 536,655 + ABIE40_RS02700 0.55 -1.7 536,655 + ABIE40_RS02700 0.55 -0.1 536,655 + ABIE40_RS02700 0.55 -0.6 536,655 + ABIE40_RS02700 0.55 -1.2 536,655 + ABIE40_RS02700 0.55 +0.2 536,655 + ABIE40_RS02700 0.55 +1.7 536,655 + ABIE40_RS02700 0.55 -0.1 536,655 + ABIE40_RS02700 0.55 -0.5 536,655 + ABIE40_RS02700 0.55 +0.2 536,656 - ABIE40_RS02700 0.55 -2.3 536,656 - ABIE40_RS02700 0.55 +0.4 536,656 - ABIE40_RS02700 0.55 -1.3 536,656 - ABIE40_RS02700 0.55 +0.5 536,656 - ABIE40_RS02700 0.55 +0.5 536,656 - ABIE40_RS02700 0.55 -1.0 536,656 - ABIE40_RS02700 0.55 +0.3 536,686 + ABIE40_RS02700 0.63 +1.6 536,686 + ABIE40_RS02700 0.63 -0.7 536,687 - ABIE40_RS02700 0.64 -2.1 536,711 + ABIE40_RS02700 0.70 +2.5 536,711 + ABIE40_RS02700 0.70 -0.4 536,712 - ABIE40_RS02700 0.70 -2.0 536,721 + ABIE40_RS02700 0.73 +0.2 536,721 + ABIE40_RS02700 0.73 -0.9 536,721 + ABIE40_RS02700 0.73 +0.2
Or see this region's nucleotide sequence