Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS01355

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS01345 and ABIE40_RS01350 overlap by 4 nucleotidesABIE40_RS01350 and ABIE40_RS01355 overlap by 1 nucleotidesABIE40_RS01355 and ABIE40_RS01360 are separated by 114 nucleotides ABIE40_RS01345: ABIE40_RS01345 - orotidine-5'-phosphate decarboxylase, at 264,827 to 265,525 _RS01345 ABIE40_RS01350: ABIE40_RS01350 - histidine phosphatase family protein, at 265,522 to 266,112 _RS01350 ABIE40_RS01355: ABIE40_RS01355 - phospholipid N-methyltransferase PmtA, at 266,112 to 266,705 _RS01355 ABIE40_RS01360: ABIE40_RS01360 - DNA polymerase III subunit beta, at 266,820 to 267,938 _RS01360 Position (kb) 266 267Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 265.571 kb on - strandat 265.598 kb on + strand, within ABIE40_RS01350at 265.599 kb on - strand, within ABIE40_RS01350at 265.599 kb on - strand, within ABIE40_RS01350at 265.599 kb on - strand, within ABIE40_RS01350at 265.599 kb on - strand, within ABIE40_RS01350at 265.599 kb on - strand, within ABIE40_RS01350at 265.599 kb on - strand, within ABIE40_RS01350at 265.599 kb on - strand, within ABIE40_RS01350at 265.599 kb on - strand, within ABIE40_RS01350at 265.599 kb on - strand, within ABIE40_RS01350at 265.600 kb on + strand, within ABIE40_RS01350at 265.669 kb on + strand, within ABIE40_RS01350at 265.669 kb on + strand, within ABIE40_RS01350at 265.669 kb on + strand, within ABIE40_RS01350at 265.669 kb on + strand, within ABIE40_RS01350at 265.670 kb on - strand, within ABIE40_RS01350at 265.755 kb on + strand, within ABIE40_RS01350at 265.931 kb on - strand, within ABIE40_RS01350at 266.081 kb on - strandat 266.081 kb on - strandat 266.094 kb on + strandat 266.097 kb on + strandat 266.097 kb on + strandat 266.097 kb on + strandat 266.097 kb on + strandat 266.097 kb on + strandat 266.098 kb on - strandat 266.098 kb on - strandat 266.098 kb on - strandat 266.098 kb on - strandat 266.098 kb on - strandat 266.098 kb on - strandat 266.098 kb on - strandat 266.098 kb on - strandat 266.098 kb on - strandat 266.099 kb on + strandat 266.099 kb on + strandat 266.099 kb on + strandat 266.099 kb on + strandat 266.100 kb on - strandat 266.100 kb on - strandat 266.100 kb on - strandat 266.100 kb on - strandat 266.100 kb on - strandat 266.100 kb on - strandat 266.100 kb on - strandat 266.100 kb on - strandat 266.100 kb on - strandat 266.100 kb on - strandat 266.100 kb on - strandat 266.125 kb on + strandat 266.125 kb on + strandat 266.126 kb on - strandat 266.185 kb on + strand, within ABIE40_RS01355at 266.185 kb on + strand, within ABIE40_RS01355at 266.186 kb on - strand, within ABIE40_RS01355at 266.224 kb on + strand, within ABIE40_RS01355at 266.224 kb on + strand, within ABIE40_RS01355at 266.225 kb on - strand, within ABIE40_RS01355at 266.372 kb on + strand, within ABIE40_RS01355at 266.372 kb on + strand, within ABIE40_RS01355at 266.416 kb on + strand, within ABIE40_RS01355at 266.437 kb on + strand, within ABIE40_RS01355at 266.437 kb on + strand, within ABIE40_RS01355at 266.437 kb on + strand, within ABIE40_RS01355at 266.437 kb on + strand, within ABIE40_RS01355at 266.437 kb on + strand, within ABIE40_RS01355at 266.437 kb on + strand, within ABIE40_RS01355at 266.437 kb on + strand, within ABIE40_RS01355at 266.437 kb on + strand, within ABIE40_RS01355at 266.437 kb on + strand, within ABIE40_RS01355at 266.438 kb on - strand, within ABIE40_RS01355at 266.438 kb on - strand, within ABIE40_RS01355at 266.438 kb on - strand, within ABIE40_RS01355at 266.438 kb on - strand, within ABIE40_RS01355at 266.438 kb on - strand, within ABIE40_RS01355at 266.562 kb on + strand, within ABIE40_RS01355at 266.562 kb on + strand, within ABIE40_RS01355at 266.562 kb on + strand, within ABIE40_RS01355at 266.562 kb on + strand, within ABIE40_RS01355at 266.563 kb on - strand, within ABIE40_RS01355at 266.563 kb on - strand, within ABIE40_RS01355at 266.588 kb on + strand, within ABIE40_RS01355at 266.600 kb on + strand, within ABIE40_RS01355at 266.600 kb on + strand, within ABIE40_RS01355at 266.600 kb on + strand, within ABIE40_RS01355at 266.601 kb on - strand, within ABIE40_RS01355at 266.743 kb on + strandat 266.743 kb on + strandat 266.743 kb on + strandat 266.743 kb on + strandat 266.743 kb on + strandat 266.743 kb on + strandat 266.743 kb on + strandat 266.743 kb on + strandat 266.743 kb on + strandat 266.744 kb on - strandat 266.744 kb on - strandat 266.744 kb on - strandat 266.763 kb on + strandat 266.763 kb on + strandat 266.763 kb on + strandat 266.764 kb on - strandat 266.764 kb on - strandat 266.764 kb on - strandat 266.822 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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265,571 - -0.1
265,598 + ABIE40_RS01350 0.13 -3.0
265,599 - ABIE40_RS01350 0.13 -0.9
265,599 - ABIE40_RS01350 0.13 -2.0
265,599 - ABIE40_RS01350 0.13 +0.0
265,599 - ABIE40_RS01350 0.13 +1.2
265,599 - ABIE40_RS01350 0.13 -1.7
265,599 - ABIE40_RS01350 0.13 +0.1
265,599 - ABIE40_RS01350 0.13 +0.3
265,599 - ABIE40_RS01350 0.13 +0.7
265,599 - ABIE40_RS01350 0.13 -0.0
265,600 + ABIE40_RS01350 0.13 +1.5
265,669 + ABIE40_RS01350 0.25 +1.4
265,669 + ABIE40_RS01350 0.25 -0.3
265,669 + ABIE40_RS01350 0.25 -1.2
265,669 + ABIE40_RS01350 0.25 +0.6
265,670 - ABIE40_RS01350 0.25 -0.6
265,755 + ABIE40_RS01350 0.39 +0.0
265,931 - ABIE40_RS01350 0.69 +1.9
266,081 - +1.2
266,081 - -0.4
266,094 + -0.1
266,097 + -0.6
266,097 + +0.2
266,097 + -1.3
266,097 + +0.4
266,097 + -1.3
266,098 - -1.2
266,098 - -0.7
266,098 - +0.3
266,098 - -1.0
266,098 - +0.3
266,098 - -0.4
266,098 - -0.2
266,098 - -1.1
266,098 - +0.8
266,099 + -0.1
266,099 + -1.8
266,099 + +0.4
266,099 + -0.0
266,100 - +0.5
266,100 - -0.0
266,100 - -3.1
266,100 - -0.6
266,100 - -0.7
266,100 - -2.6
266,100 - -1.2
266,100 - -0.3
266,100 - -1.8
266,100 - -0.6
266,100 - -0.8
266,125 + -4.0
266,125 + -0.4
266,126 - -2.0
266,185 + ABIE40_RS01355 0.12 -1.1
266,185 + ABIE40_RS01355 0.12 -3.1
266,186 - ABIE40_RS01355 0.12 -0.7
266,224 + ABIE40_RS01355 0.19 -2.1
266,224 + ABIE40_RS01355 0.19 -1.8
266,225 - ABIE40_RS01355 0.19 -2.2
266,372 + ABIE40_RS01355 0.44 -1.0
266,372 + ABIE40_RS01355 0.44 -0.3
266,416 + ABIE40_RS01355 0.51 -1.6
266,437 + ABIE40_RS01355 0.55 -1.1
266,437 + ABIE40_RS01355 0.55 -1.1
266,437 + ABIE40_RS01355 0.55 -0.6
266,437 + ABIE40_RS01355 0.55 -2.7
266,437 + ABIE40_RS01355 0.55 -2.5
266,437 + ABIE40_RS01355 0.55 -1.6
266,437 + ABIE40_RS01355 0.55 -2.8
266,437 + ABIE40_RS01355 0.55 +1.5
266,437 + ABIE40_RS01355 0.55 +0.0
266,438 - ABIE40_RS01355 0.55 +0.0
266,438 - ABIE40_RS01355 0.55 -0.5
266,438 - ABIE40_RS01355 0.55 -1.7
266,438 - ABIE40_RS01355 0.55 +0.7
266,438 - ABIE40_RS01355 0.55 -1.3
266,562 + ABIE40_RS01355 0.76 -0.7
266,562 + ABIE40_RS01355 0.76 -0.9
266,562 + ABIE40_RS01355 0.76 -1.8
266,562 + ABIE40_RS01355 0.76 -2.6
266,563 - ABIE40_RS01355 0.76 -1.4
266,563 - ABIE40_RS01355 0.76 -1.8
266,588 + ABIE40_RS01355 0.80 -2.1
266,600 + ABIE40_RS01355 0.82 -3.0
266,600 + ABIE40_RS01355 0.82 -3.1
266,600 + ABIE40_RS01355 0.82 -3.1
266,601 - ABIE40_RS01355 0.82 -3.1
266,743 + -1.1
266,743 + -3.0
266,743 + -0.0
266,743 + -1.6
266,743 + -0.4
266,743 + -1.0
266,743 + -1.9
266,743 + -0.8
266,743 + -4.1
266,744 - -0.1
266,744 - -3.2
266,744 - -0.6
266,763 + -2.2
266,763 + -2.1
266,763 + -2.3
266,764 - -2.9
266,764 - -0.7
266,764 - -0.8
266,822 - +0.0

Or see this region's nucleotide sequence