Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS00930 and ABIE40_RS00935 are separated by 268 nucleotides ABIE40_RS00935 and ABIE40_RS00940 are separated by 103 nucleotides
ABIE40_RS00930: ABIE40_RS00930 - ABC transporter permease, at 190,646 to 191,596
_RS00930
ABIE40_RS00935: ABIE40_RS00935 - ABC transporter substrate-binding protein, at 191,865 to 193,379
_RS00935
ABIE40_RS00940: ABIE40_RS00940 - LysR substrate-binding domain-containing protein, at 193,483 to 194,385
_RS00940
Position (kb) 191
192
193
194 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 191.349 kb on + strand, within ABIE40_RS00930 at 191.349 kb on + strand, within ABIE40_RS00930 at 191.349 kb on + strand, within ABIE40_RS00930 at 191.349 kb on + strand, within ABIE40_RS00930 at 191.349 kb on + strand, within ABIE40_RS00930 at 191.349 kb on + strand, within ABIE40_RS00930 at 191.350 kb on - strand, within ABIE40_RS00930 at 191.350 kb on - strand, within ABIE40_RS00930 at 191.350 kb on - strand, within ABIE40_RS00930 at 191.350 kb on - strand, within ABIE40_RS00930 at 191.350 kb on - strand, within ABIE40_RS00930 at 191.350 kb on - strand, within ABIE40_RS00930 at 191.350 kb on - strand, within ABIE40_RS00930 at 191.350 kb on - strand, within ABIE40_RS00930 at 191.350 kb on - strand, within ABIE40_RS00930 at 191.353 kb on + strand, within ABIE40_RS00930 at 191.353 kb on + strand, within ABIE40_RS00930 at 191.353 kb on + strand, within ABIE40_RS00930 at 191.353 kb on + strand, within ABIE40_RS00930 at 191.353 kb on + strand, within ABIE40_RS00930 at 191.354 kb on - strand, within ABIE40_RS00930 at 191.354 kb on - strand, within ABIE40_RS00930 at 191.354 kb on - strand, within ABIE40_RS00930 at 191.354 kb on - strand, within ABIE40_RS00930 at 191.354 kb on - strand, within ABIE40_RS00930 at 191.354 kb on - strand, within ABIE40_RS00930 at 191.354 kb on - strand, within ABIE40_RS00930 at 191.354 kb on - strand, within ABIE40_RS00930 at 191.355 kb on + strand, within ABIE40_RS00930 at 191.355 kb on + strand, within ABIE40_RS00930 at 191.355 kb on + strand, within ABIE40_RS00930 at 191.356 kb on - strand, within ABIE40_RS00930 at 191.356 kb on - strand, within ABIE40_RS00930 at 191.356 kb on - strand, within ABIE40_RS00930 at 191.598 kb on + strand at 191.598 kb on + strand at 191.598 kb on + strand at 191.599 kb on - strand at 191.599 kb on - strand at 191.599 kb on - strand at 191.815 kb on + strand at 191.815 kb on + strand at 191.815 kb on + strand at 191.815 kb on + strand at 191.816 kb on - strand at 191.816 kb on - strand at 191.816 kb on - strand at 191.816 kb on - strand at 191.816 kb on - strand at 191.816 kb on - strand at 191.816 kb on - strand at 191.816 kb on - strand at 191.816 kb on - strand at 191.816 kb on - strand at 191.816 kb on - strand at 191.820 kb on + strand at 191.820 kb on + strand at 191.821 kb on - strand at 191.821 kb on - strand at 191.844 kb on + strand at 191.845 kb on - strand at 191.845 kb on - strand at 191.922 kb on + strand at 191.923 kb on - strand at 191.975 kb on - strand at 191.975 kb on - strand at 191.975 kb on - strand at 192.020 kb on - strand, within ABIE40_RS00935 at 192.020 kb on - strand, within ABIE40_RS00935 at 192.094 kb on + strand, within ABIE40_RS00935 at 192.103 kb on + strand, within ABIE40_RS00935 at 192.104 kb on - strand, within ABIE40_RS00935 at 192.104 kb on - strand, within ABIE40_RS00935 at 192.104 kb on - strand, within ABIE40_RS00935 at 192.106 kb on + strand, within ABIE40_RS00935 at 192.106 kb on + strand, within ABIE40_RS00935 at 192.107 kb on - strand, within ABIE40_RS00935 at 192.121 kb on + strand, within ABIE40_RS00935 at 192.125 kb on + strand, within ABIE40_RS00935 at 192.126 kb on - strand, within ABIE40_RS00935 at 192.289 kb on + strand, within ABIE40_RS00935 at 192.290 kb on - strand, within ABIE40_RS00935 at 192.376 kb on + strand, within ABIE40_RS00935 at 192.424 kb on + strand, within ABIE40_RS00935 at 192.425 kb on - strand, within ABIE40_RS00935 at 192.751 kb on + strand, within ABIE40_RS00935 at 193.095 kb on - strand, within ABIE40_RS00935 at 193.095 kb on - strand, within ABIE40_RS00935 at 193.095 kb on - strand, within ABIE40_RS00935 at 193.096 kb on + strand, within ABIE40_RS00935 at 193.097 kb on - strand, within ABIE40_RS00935 at 193.097 kb on - strand, within ABIE40_RS00935 at 193.097 kb on - strand, within ABIE40_RS00935 at 193.097 kb on - strand, within ABIE40_RS00935 at 193.097 kb on - strand, within ABIE40_RS00935 at 193.381 kb on + strand at 193.381 kb on + strand at 193.381 kb on + strand at 193.381 kb on + strand at 193.381 kb on + strand at 193.381 kb on + strand at 193.382 kb on - strand at 193.382 kb on - strand at 193.382 kb on - strand at 193.382 kb on - strand at 193.382 kb on - strand at 193.382 kb on - strand at 193.382 kb on - strand at 193.382 kb on - strand at 193.382 kb on - strand at 193.382 kb on - strand at 193.382 kb on - strand at 193.382 kb on - strand at 193.382 kb on - strand at 193.382 kb on - strand at 193.394 kb on - strand at 193.394 kb on - strand at 193.395 kb on + strand at 193.396 kb on - strand at 193.396 kb on - strand at 193.729 kb on - strand, within ABIE40_RS00940 at 193.729 kb on - strand, within ABIE40_RS00940 at 193.892 kb on + strand, within ABIE40_RS00940 at 193.892 kb on + strand, within ABIE40_RS00940 at 193.893 kb on - strand, within ABIE40_RS00940 at 193.893 kb on - strand, within ABIE40_RS00940 at 193.893 kb on - strand, within ABIE40_RS00940 at 194.036 kb on + strand, within ABIE40_RS00940 at 194.036 kb on + strand, within ABIE40_RS00940 at 194.261 kb on + strand, within ABIE40_RS00940 at 194.261 kb on + strand, within ABIE40_RS00940 at 194.262 kb on - strand, within ABIE40_RS00940 at 194.262 kb on - strand, within ABIE40_RS00940 at 194.262 kb on - strand, within ABIE40_RS00940 at 194.363 kb on + strand at 194.363 kb on + strand at 194.364 kb on - strand at 194.364 kb on - strand at 194.364 kb on - strand at 194.364 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 191,349 + ABIE40_RS00930 0.74 -1.4 191,349 + ABIE40_RS00930 0.74 -1.1 191,349 + ABIE40_RS00930 0.74 -0.3 191,349 + ABIE40_RS00930 0.74 -1.8 191,349 + ABIE40_RS00930 0.74 -2.4 191,349 + ABIE40_RS00930 0.74 -2.4 191,350 - ABIE40_RS00930 0.74 -3.9 191,350 - ABIE40_RS00930 0.74 -1.6 191,350 - ABIE40_RS00930 0.74 -1.9 191,350 - ABIE40_RS00930 0.74 -0.8 191,350 - ABIE40_RS00930 0.74 -1.4 191,350 - ABIE40_RS00930 0.74 -1.0 191,350 - ABIE40_RS00930 0.74 -0.8 191,350 - ABIE40_RS00930 0.74 +0.4 191,350 - ABIE40_RS00930 0.74 +4.6 191,353 + ABIE40_RS00930 0.74 +2.4 191,353 + ABIE40_RS00930 0.74 -1.9 191,353 + ABIE40_RS00930 0.74 +1.0 191,353 + ABIE40_RS00930 0.74 -1.9 191,353 + ABIE40_RS00930 0.74 -3.1 191,354 - ABIE40_RS00930 0.74 -2.0 191,354 - ABIE40_RS00930 0.74 -2.2 191,354 - ABIE40_RS00930 0.74 -2.0 191,354 - ABIE40_RS00930 0.74 -2.7 191,354 - ABIE40_RS00930 0.74 -2.4 191,354 - ABIE40_RS00930 0.74 -2.1 191,354 - ABIE40_RS00930 0.74 -1.0 191,354 - ABIE40_RS00930 0.74 -2.0 191,355 + ABIE40_RS00930 0.75 +1.2 191,355 + ABIE40_RS00930 0.75 +0.0 191,355 + ABIE40_RS00930 0.75 -1.1 191,356 - ABIE40_RS00930 0.75 -2.6 191,356 - ABIE40_RS00930 0.75 -3.3 191,356 - ABIE40_RS00930 0.75 -1.9 191,598 + -3.0 191,598 + +0.9 191,598 + -1.4 191,599 - +0.2 191,599 - +0.5 191,599 - -1.1 191,815 + +1.6 191,815 + -2.5 191,815 + -0.5 191,815 + +0.7 191,816 - -2.6 191,816 - -0.4 191,816 - -0.8 191,816 - +0.0 191,816 - +0.1 191,816 - -0.4 191,816 - +1.2 191,816 - +0.3 191,816 - +0.3 191,816 - -1.1 191,816 - +2.5 191,820 + +0.6 191,820 + -1.4 191,821 - +0.2 191,821 - +1.0 191,844 + +0.4 191,845 - -0.4 191,845 - +0.7 191,922 + -0.8 191,923 - +0.0 191,975 - -3.7 191,975 - +1.0 191,975 - -3.1 192,020 - ABIE40_RS00935 0.10 -1.1 192,020 - ABIE40_RS00935 0.10 -1.1 192,094 + ABIE40_RS00935 0.15 -1.9 192,103 + ABIE40_RS00935 0.16 -0.6 192,104 - ABIE40_RS00935 0.16 -0.6 192,104 - ABIE40_RS00935 0.16 -0.6 192,104 - ABIE40_RS00935 0.16 -0.3 192,106 + ABIE40_RS00935 0.16 -1.7 192,106 + ABIE40_RS00935 0.16 -2.1 192,107 - ABIE40_RS00935 0.16 -0.8 192,121 + ABIE40_RS00935 0.17 -1.9 192,125 + ABIE40_RS00935 0.17 -1.0 192,126 - ABIE40_RS00935 0.17 -2.7 192,289 + ABIE40_RS00935 0.28 -1.6 192,290 - ABIE40_RS00935 0.28 -3.1 192,376 + ABIE40_RS00935 0.34 -0.6 192,424 + ABIE40_RS00935 0.37 -1.6 192,425 - ABIE40_RS00935 0.37 -0.8 192,751 + ABIE40_RS00935 0.58 -1.1 193,095 - ABIE40_RS00935 0.81 -2.0 193,095 - ABIE40_RS00935 0.81 -3.5 193,095 - ABIE40_RS00935 0.81 -0.6 193,096 + ABIE40_RS00935 0.81 -0.3 193,097 - ABIE40_RS00935 0.81 -2.4 193,097 - ABIE40_RS00935 0.81 -0.3 193,097 - ABIE40_RS00935 0.81 -2.9 193,097 - ABIE40_RS00935 0.81 -2.5 193,097 - ABIE40_RS00935 0.81 +0.1 193,381 + -2.7 193,381 + -0.4 193,381 + -3.7 193,381 + -2.1 193,381 + +1.2 193,381 + -3.5 193,382 - -0.2 193,382 - -0.1 193,382 - -1.4 193,382 - +0.6 193,382 - -1.1 193,382 - +0.4 193,382 - -0.3 193,382 - +2.0 193,382 - -0.0 193,382 - -0.9 193,382 - -2.2 193,382 - +0.2 193,382 - -0.7 193,382 - -0.2 193,394 - -0.2 193,394 - +0.1 193,395 + +1.0 193,396 - +0.8 193,396 - -2.1 193,729 - ABIE40_RS00940 0.27 +0.9 193,729 - ABIE40_RS00940 0.27 -1.1 193,892 + ABIE40_RS00940 0.45 +0.5 193,892 + ABIE40_RS00940 0.45 -0.2 193,893 - ABIE40_RS00940 0.45 +0.9 193,893 - ABIE40_RS00940 0.45 -2.8 193,893 - ABIE40_RS00940 0.45 -0.8 194,036 + ABIE40_RS00940 0.61 -0.2 194,036 + ABIE40_RS00940 0.61 +1.1 194,261 + ABIE40_RS00940 0.86 +0.2 194,261 + ABIE40_RS00940 0.86 +0.3 194,262 - ABIE40_RS00940 0.86 +1.9 194,262 - ABIE40_RS00940 0.86 -1.4 194,262 - ABIE40_RS00940 0.86 -0.2 194,363 + -1.2 194,363 + -0.8 194,364 - +1.3 194,364 - -1.9 194,364 - +0.8 194,364 - -0.8
Or see this region's nucleotide sequence