Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25375

Experiment: D-Gluconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25370 and ABID97_RS25375 are separated by 105 nucleotidesABID97_RS25375 and ABID97_RS25380 are separated by 0 nucleotides ABID97_RS25370: ABID97_RS25370 - phenylalanine 4-monooxygenase, at 5,256,477 to 5,257,361 _RS25370 ABID97_RS25375: ABID97_RS25375 - AMP-binding protein, at 5,257,467 to 5,259,158 _RS25375 ABID97_RS25380: ABID97_RS25380 - MBL fold metallo-hydrolase, at 5,259,159 to 5,260,088 _RS25380 Position (kb) 5257 5258 5259 5260Strain fitness (log2 ratio) -1 0 1 2 3at 5256.525 kb on + strandat 5256.588 kb on + strand, within ABID97_RS25370at 5256.588 kb on + strand, within ABID97_RS25370at 5256.588 kb on + strand, within ABID97_RS25370at 5256.588 kb on + strand, within ABID97_RS25370at 5256.588 kb on + strand, within ABID97_RS25370at 5256.589 kb on - strand, within ABID97_RS25370at 5256.615 kb on + strand, within ABID97_RS25370at 5256.616 kb on - strand, within ABID97_RS25370at 5256.616 kb on - strand, within ABID97_RS25370at 5256.639 kb on + strand, within ABID97_RS25370at 5256.639 kb on + strand, within ABID97_RS25370at 5256.639 kb on + strand, within ABID97_RS25370at 5256.640 kb on - strand, within ABID97_RS25370at 5256.640 kb on - strand, within ABID97_RS25370at 5256.640 kb on - strand, within ABID97_RS25370at 5256.640 kb on - strand, within ABID97_RS25370at 5256.640 kb on - strand, within ABID97_RS25370at 5256.640 kb on - strand, within ABID97_RS25370at 5256.640 kb on - strand, within ABID97_RS25370at 5256.640 kb on - strand, within ABID97_RS25370at 5256.651 kb on + strand, within ABID97_RS25370at 5256.894 kb on + strand, within ABID97_RS25370at 5256.894 kb on + strand, within ABID97_RS25370at 5256.894 kb on + strand, within ABID97_RS25370at 5256.894 kb on + strand, within ABID97_RS25370at 5256.894 kb on + strand, within ABID97_RS25370at 5256.894 kb on + strand, within ABID97_RS25370at 5256.895 kb on - strand, within ABID97_RS25370at 5256.895 kb on - strand, within ABID97_RS25370at 5256.895 kb on - strand, within ABID97_RS25370at 5256.895 kb on - strand, within ABID97_RS25370at 5256.895 kb on - strand, within ABID97_RS25370at 5256.895 kb on - strand, within ABID97_RS25370at 5256.895 kb on - strand, within ABID97_RS25370at 5256.895 kb on - strand, within ABID97_RS25370at 5256.895 kb on - strand, within ABID97_RS25370at 5256.969 kb on + strand, within ABID97_RS25370at 5256.969 kb on + strand, within ABID97_RS25370at 5256.969 kb on + strand, within ABID97_RS25370at 5256.970 kb on - strand, within ABID97_RS25370at 5256.970 kb on - strand, within ABID97_RS25370at 5256.970 kb on - strand, within ABID97_RS25370at 5256.970 kb on - strand, within ABID97_RS25370at 5256.970 kb on - strand, within ABID97_RS25370at 5256.970 kb on - strand, within ABID97_RS25370at 5257.041 kb on + strand, within ABID97_RS25370at 5257.041 kb on + strand, within ABID97_RS25370at 5257.048 kb on - strand, within ABID97_RS25370at 5257.048 kb on - strand, within ABID97_RS25370at 5257.048 kb on - strand, within ABID97_RS25370at 5257.048 kb on - strand, within ABID97_RS25370at 5257.095 kb on + strand, within ABID97_RS25370at 5257.201 kb on - strand, within ABID97_RS25370at 5257.201 kb on - strand, within ABID97_RS25370at 5257.201 kb on - strand, within ABID97_RS25370at 5257.201 kb on - strand, within ABID97_RS25370at 5257.215 kb on + strand, within ABID97_RS25370at 5257.215 kb on + strand, within ABID97_RS25370at 5257.215 kb on + strand, within ABID97_RS25370at 5257.215 kb on + strand, within ABID97_RS25370at 5257.215 kb on + strand, within ABID97_RS25370at 5257.216 kb on - strand, within ABID97_RS25370at 5257.216 kb on - strand, within ABID97_RS25370at 5257.216 kb on - strand, within ABID97_RS25370at 5257.216 kb on - strand, within ABID97_RS25370at 5257.216 kb on - strand, within ABID97_RS25370at 5257.216 kb on - strand, within ABID97_RS25370at 5257.227 kb on + strand, within ABID97_RS25370at 5257.227 kb on + strand, within ABID97_RS25370at 5257.227 kb on + strand, within ABID97_RS25370at 5257.227 kb on + strand, within ABID97_RS25370at 5257.227 kb on + strand, within ABID97_RS25370at 5257.227 kb on + strand, within ABID97_RS25370at 5257.228 kb on - strand, within ABID97_RS25370at 5257.228 kb on - strand, within ABID97_RS25370at 5257.228 kb on - strand, within ABID97_RS25370at 5257.228 kb on - strand, within ABID97_RS25370at 5257.291 kb on - strandat 5257.404 kb on + strandat 5257.404 kb on + strandat 5257.572 kb on + strandat 5257.618 kb on - strandat 5257.758 kb on + strand, within ABID97_RS25375at 5257.758 kb on + strand, within ABID97_RS25375at 5257.759 kb on - strand, within ABID97_RS25375at 5257.759 kb on - strand, within ABID97_RS25375at 5257.760 kb on + strand, within ABID97_RS25375at 5257.760 kb on + strand, within ABID97_RS25375at 5257.760 kb on + strand, within ABID97_RS25375at 5257.760 kb on + strand, within ABID97_RS25375at 5257.760 kb on + strand, within ABID97_RS25375at 5257.760 kb on + strand, within ABID97_RS25375at 5257.761 kb on - strand, within ABID97_RS25375at 5257.761 kb on - strand, within ABID97_RS25375at 5257.761 kb on - strand, within ABID97_RS25375at 5257.761 kb on - strand, within ABID97_RS25375at 5257.761 kb on - strand, within ABID97_RS25375at 5257.761 kb on - strand, within ABID97_RS25375at 5257.761 kb on - strand, within ABID97_RS25375at 5257.761 kb on - strand, within ABID97_RS25375at 5257.785 kb on + strand, within ABID97_RS25375at 5257.785 kb on + strand, within ABID97_RS25375at 5257.785 kb on + strand, within ABID97_RS25375at 5257.786 kb on - strand, within ABID97_RS25375at 5257.786 kb on - strand, within ABID97_RS25375at 5258.116 kb on - strand, within ABID97_RS25375at 5258.116 kb on - strand, within ABID97_RS25375at 5258.116 kb on - strand, within ABID97_RS25375at 5258.116 kb on - strand, within ABID97_RS25375at 5258.268 kb on + strand, within ABID97_RS25375at 5258.268 kb on + strand, within ABID97_RS25375at 5258.268 kb on + strand, within ABID97_RS25375at 5258.268 kb on + strand, within ABID97_RS25375at 5258.268 kb on + strand, within ABID97_RS25375at 5258.269 kb on - strand, within ABID97_RS25375at 5258.739 kb on + strand, within ABID97_RS25375at 5258.739 kb on + strand, within ABID97_RS25375at 5258.740 kb on - strand, within ABID97_RS25375at 5258.740 kb on - strand, within ABID97_RS25375at 5258.740 kb on - strand, within ABID97_RS25375at 5258.742 kb on + strand, within ABID97_RS25375at 5258.742 kb on + strand, within ABID97_RS25375at 5258.742 kb on + strand, within ABID97_RS25375at 5258.742 kb on + strand, within ABID97_RS25375at 5258.742 kb on + strand, within ABID97_RS25375at 5258.742 kb on + strand, within ABID97_RS25375at 5258.742 kb on + strand, within ABID97_RS25375at 5258.742 kb on + strand, within ABID97_RS25375at 5258.742 kb on + strand, within ABID97_RS25375at 5258.742 kb on + strand, within ABID97_RS25375at 5258.742 kb on + strand, within ABID97_RS25375at 5258.742 kb on + strand, within ABID97_RS25375at 5258.742 kb on + strand, within ABID97_RS25375at 5258.743 kb on - strand, within ABID97_RS25375at 5258.743 kb on - strand, within ABID97_RS25375at 5258.743 kb on - strand, within ABID97_RS25375at 5258.743 kb on - strand, within ABID97_RS25375at 5258.743 kb on - strand, within ABID97_RS25375at 5258.743 kb on - strand, within ABID97_RS25375at 5258.743 kb on - strand, within ABID97_RS25375at 5258.743 kb on - strand, within ABID97_RS25375at 5258.743 kb on - strand, within ABID97_RS25375at 5258.743 kb on - strand, within ABID97_RS25375at 5258.830 kb on - strand, within ABID97_RS25375at 5259.036 kb on + strandat 5259.036 kb on + strandat 5259.036 kb on + strandat 5259.036 kb on + strandat 5259.036 kb on + strandat 5259.037 kb on - strandat 5259.037 kb on - strandat 5259.060 kb on + strandat 5259.280 kb on - strand, within ABID97_RS25380at 5259.280 kb on - strand, within ABID97_RS25380at 5259.280 kb on - strand, within ABID97_RS25380at 5259.356 kb on + strand, within ABID97_RS25380at 5259.356 kb on + strand, within ABID97_RS25380at 5259.356 kb on + strand, within ABID97_RS25380at 5259.356 kb on + strand, within ABID97_RS25380at 5259.357 kb on - strand, within ABID97_RS25380at 5259.357 kb on - strand, within ABID97_RS25380at 5259.357 kb on - strand, within ABID97_RS25380at 5259.409 kb on - strand, within ABID97_RS25380at 5259.409 kb on - strand, within ABID97_RS25380at 5259.409 kb on - strand, within ABID97_RS25380at 5259.960 kb on + strand, within ABID97_RS25380at 5259.960 kb on + strand, within ABID97_RS25380at 5260.060 kb on + strandat 5260.060 kb on + strandat 5260.061 kb on - strandat 5260.061 kb on - strandat 5260.083 kb on - strandat 5260.086 kb on + strandat 5260.087 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
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5,256,525 + -0.3
5,256,588 + ABID97_RS25370 0.13 +1.2
5,256,588 + ABID97_RS25370 0.13 -0.4
5,256,588 + ABID97_RS25370 0.13 -1.1
5,256,588 + ABID97_RS25370 0.13 +0.3
5,256,588 + ABID97_RS25370 0.13 -0.4
5,256,589 - ABID97_RS25370 0.13 +0.1
5,256,615 + ABID97_RS25370 0.16 +0.2
5,256,616 - ABID97_RS25370 0.16 -0.1
5,256,616 - ABID97_RS25370 0.16 +0.1
5,256,639 + ABID97_RS25370 0.18 +0.2
5,256,639 + ABID97_RS25370 0.18 +0.3
5,256,639 + ABID97_RS25370 0.18 -0.3
5,256,640 - ABID97_RS25370 0.18 -1.5
5,256,640 - ABID97_RS25370 0.18 +0.1
5,256,640 - ABID97_RS25370 0.18 +0.8
5,256,640 - ABID97_RS25370 0.18 +0.2
5,256,640 - ABID97_RS25370 0.18 +0.1
5,256,640 - ABID97_RS25370 0.18 +0.8
5,256,640 - ABID97_RS25370 0.18 +0.8
5,256,640 - ABID97_RS25370 0.18 -1.0
5,256,651 + ABID97_RS25370 0.20 -0.9
5,256,894 + ABID97_RS25370 0.47 +0.2
5,256,894 + ABID97_RS25370 0.47 +0.6
5,256,894 + ABID97_RS25370 0.47 +0.8
5,256,894 + ABID97_RS25370 0.47 -0.2
5,256,894 + ABID97_RS25370 0.47 -0.3
5,256,894 + ABID97_RS25370 0.47 +0.4
5,256,895 - ABID97_RS25370 0.47 +0.3
5,256,895 - ABID97_RS25370 0.47 +0.3
5,256,895 - ABID97_RS25370 0.47 +0.2
5,256,895 - ABID97_RS25370 0.47 -0.8
5,256,895 - ABID97_RS25370 0.47 +0.8
5,256,895 - ABID97_RS25370 0.47 +0.5
5,256,895 - ABID97_RS25370 0.47 -0.1
5,256,895 - ABID97_RS25370 0.47 +0.4
5,256,895 - ABID97_RS25370 0.47 +0.3
5,256,969 + ABID97_RS25370 0.56 +0.1
5,256,969 + ABID97_RS25370 0.56 +0.6
5,256,969 + ABID97_RS25370 0.56 -0.6
5,256,970 - ABID97_RS25370 0.56 -0.1
5,256,970 - ABID97_RS25370 0.56 -0.0
5,256,970 - ABID97_RS25370 0.56 -0.3
5,256,970 - ABID97_RS25370 0.56 +0.2
5,256,970 - ABID97_RS25370 0.56 -0.1
5,256,970 - ABID97_RS25370 0.56 -0.7
5,257,041 + ABID97_RS25370 0.64 -0.6
5,257,041 + ABID97_RS25370 0.64 +0.3
5,257,048 - ABID97_RS25370 0.65 -0.7
5,257,048 - ABID97_RS25370 0.65 -0.1
5,257,048 - ABID97_RS25370 0.65 +0.4
5,257,048 - ABID97_RS25370 0.65 +0.1
5,257,095 + ABID97_RS25370 0.70 -0.0
5,257,201 - ABID97_RS25370 0.82 -0.1
5,257,201 - ABID97_RS25370 0.82 +0.4
5,257,201 - ABID97_RS25370 0.82 -0.4
5,257,201 - ABID97_RS25370 0.82 -0.1
5,257,215 + ABID97_RS25370 0.83 +0.1
5,257,215 + ABID97_RS25370 0.83 +0.3
5,257,215 + ABID97_RS25370 0.83 -0.0
5,257,215 + ABID97_RS25370 0.83 -1.3
5,257,215 + ABID97_RS25370 0.83 +1.9
5,257,216 - ABID97_RS25370 0.84 -0.5
5,257,216 - ABID97_RS25370 0.84 -0.2
5,257,216 - ABID97_RS25370 0.84 -0.0
5,257,216 - ABID97_RS25370 0.84 -0.4
5,257,216 - ABID97_RS25370 0.84 -1.0
5,257,216 - ABID97_RS25370 0.84 +0.8
5,257,227 + ABID97_RS25370 0.85 -0.2
5,257,227 + ABID97_RS25370 0.85 -0.3
5,257,227 + ABID97_RS25370 0.85 +0.2
5,257,227 + ABID97_RS25370 0.85 +0.1
5,257,227 + ABID97_RS25370 0.85 +0.3
5,257,227 + ABID97_RS25370 0.85 -0.2
5,257,228 - ABID97_RS25370 0.85 +0.4
5,257,228 - ABID97_RS25370 0.85 -0.0
5,257,228 - ABID97_RS25370 0.85 -0.0
5,257,228 - ABID97_RS25370 0.85 -0.1
5,257,291 - -0.1
5,257,404 + -0.4
5,257,404 + +2.3
5,257,572 + +0.2
5,257,618 - +0.7
5,257,758 + ABID97_RS25375 0.17 -0.1
5,257,758 + ABID97_RS25375 0.17 +0.3
5,257,759 - ABID97_RS25375 0.17 +0.2
5,257,759 - ABID97_RS25375 0.17 +0.6
5,257,760 + ABID97_RS25375 0.17 +0.1
5,257,760 + ABID97_RS25375 0.17 +1.1
5,257,760 + ABID97_RS25375 0.17 +0.9
5,257,760 + ABID97_RS25375 0.17 -0.2
5,257,760 + ABID97_RS25375 0.17 +0.1
5,257,760 + ABID97_RS25375 0.17 +0.3
5,257,761 - ABID97_RS25375 0.17 -0.3
5,257,761 - ABID97_RS25375 0.17 -0.1
5,257,761 - ABID97_RS25375 0.17 -0.2
5,257,761 - ABID97_RS25375 0.17 -0.0
5,257,761 - ABID97_RS25375 0.17 -0.2
5,257,761 - ABID97_RS25375 0.17 +0.7
5,257,761 - ABID97_RS25375 0.17 +0.2
5,257,761 - ABID97_RS25375 0.17 -0.4
5,257,785 + ABID97_RS25375 0.19 -0.5
5,257,785 + ABID97_RS25375 0.19 +0.2
5,257,785 + ABID97_RS25375 0.19 +0.1
5,257,786 - ABID97_RS25375 0.19 +1.6
5,257,786 - ABID97_RS25375 0.19 -0.0
5,258,116 - ABID97_RS25375 0.38 +0.1
5,258,116 - ABID97_RS25375 0.38 -1.2
5,258,116 - ABID97_RS25375 0.38 -0.1
5,258,116 - ABID97_RS25375 0.38 -0.4
5,258,268 + ABID97_RS25375 0.47 -1.2
5,258,268 + ABID97_RS25375 0.47 +0.4
5,258,268 + ABID97_RS25375 0.47 -0.3
5,258,268 + ABID97_RS25375 0.47 +0.1
5,258,268 + ABID97_RS25375 0.47 +1.2
5,258,269 - ABID97_RS25375 0.47 +0.2
5,258,739 + ABID97_RS25375 0.75 +0.1
5,258,739 + ABID97_RS25375 0.75 +1.1
5,258,740 - ABID97_RS25375 0.75 +0.6
5,258,740 - ABID97_RS25375 0.75 -0.1
5,258,740 - ABID97_RS25375 0.75 +0.6
5,258,742 + ABID97_RS25375 0.75 -0.1
5,258,742 + ABID97_RS25375 0.75 +0.2
5,258,742 + ABID97_RS25375 0.75 +0.1
5,258,742 + ABID97_RS25375 0.75 -0.4
5,258,742 + ABID97_RS25375 0.75 -0.2
5,258,742 + ABID97_RS25375 0.75 +0.4
5,258,742 + ABID97_RS25375 0.75 +3.3
5,258,742 + ABID97_RS25375 0.75 -0.4
5,258,742 + ABID97_RS25375 0.75 -1.1
5,258,742 + ABID97_RS25375 0.75 +0.1
5,258,742 + ABID97_RS25375 0.75 -0.1
5,258,742 + ABID97_RS25375 0.75 +0.1
5,258,742 + ABID97_RS25375 0.75 +0.1
5,258,743 - ABID97_RS25375 0.75 +1.5
5,258,743 - ABID97_RS25375 0.75 +0.0
5,258,743 - ABID97_RS25375 0.75 +1.1
5,258,743 - ABID97_RS25375 0.75 -0.2
5,258,743 - ABID97_RS25375 0.75 +0.6
5,258,743 - ABID97_RS25375 0.75 +0.9
5,258,743 - ABID97_RS25375 0.75 -0.0
5,258,743 - ABID97_RS25375 0.75 +0.3
5,258,743 - ABID97_RS25375 0.75 +0.2
5,258,743 - ABID97_RS25375 0.75 +0.1
5,258,830 - ABID97_RS25375 0.81 -0.6
5,259,036 + -1.1
5,259,036 + +0.3
5,259,036 + -0.1
5,259,036 + -0.9
5,259,036 + -0.1
5,259,037 - -0.4
5,259,037 - -0.0
5,259,060 + +0.1
5,259,280 - ABID97_RS25380 0.13 -0.2
5,259,280 - ABID97_RS25380 0.13 -0.4
5,259,280 - ABID97_RS25380 0.13 -0.3
5,259,356 + ABID97_RS25380 0.21 +1.9
5,259,356 + ABID97_RS25380 0.21 -0.0
5,259,356 + ABID97_RS25380 0.21 +0.7
5,259,356 + ABID97_RS25380 0.21 -1.1
5,259,357 - ABID97_RS25380 0.21 +0.4
5,259,357 - ABID97_RS25380 0.21 +0.1
5,259,357 - ABID97_RS25380 0.21 +0.3
5,259,409 - ABID97_RS25380 0.27 +0.0
5,259,409 - ABID97_RS25380 0.27 +0.4
5,259,409 - ABID97_RS25380 0.27 -0.3
5,259,960 + ABID97_RS25380 0.86 +0.8
5,259,960 + ABID97_RS25380 0.86 +0.4
5,260,060 + +0.4
5,260,060 + -1.7
5,260,061 - +0.7
5,260,061 - +0.0
5,260,083 - -0.4
5,260,086 + -0.8
5,260,087 - +0.7

Or see this region's nucleotide sequence