Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS25265 and ABID97_RS25270 are separated by 270 nucleotides ABID97_RS25270 and ABID97_RS25275 overlap by 4 nucleotides ABID97_RS25275 and ABID97_RS25280 are separated by 11 nucleotides
ABID97_RS25265: ABID97_RS25265 - glycine--tRNA ligase subunit alpha, at 5,235,536 to 5,236,444
_RS25265
ABID97_RS25270: ABID97_RS25270 - diacylglycerol kinase family protein, at 5,236,715 to 5,237,680
_RS25270
ABID97_RS25275: ABID97_RS25275 - metallophosphoesterase, at 5,237,677 to 5,238,501
_RS25275
ABID97_RS25280: ABID97_RS25280 - phosphatase PAP2 family protein, at 5,238,513 to 5,239,331
_RS25280
Position (kb) 5236
5237
5238 Strain fitness (log2 ratio) -1
0
1
2 at 5236.582 kb on + strand at 5236.583 kb on - strand at 5236.710 kb on + strand at 5236.711 kb on - strand at 5236.749 kb on + strand at 5236.750 kb on - strand at 5236.750 kb on - strand at 5237.027 kb on + strand, within ABID97_RS25270 at 5237.028 kb on - strand at 5237.163 kb on - strand, within ABID97_RS25270 at 5237.163 kb on - strand, within ABID97_RS25270 at 5237.163 kb on - strand, within ABID97_RS25270 at 5237.192 kb on + strand, within ABID97_RS25270 at 5237.204 kb on + strand, within ABID97_RS25270 at 5237.493 kb on + strand at 5237.493 kb on + strand, within ABID97_RS25270 at 5237.493 kb on + strand, within ABID97_RS25270 at 5237.493 kb on + strand, within ABID97_RS25270 at 5237.494 kb on - strand, within ABID97_RS25270 at 5237.936 kb on - strand, within ABID97_RS25275 at 5237.944 kb on + strand, within ABID97_RS25275 at 5237.945 kb on - strand, within ABID97_RS25275 at 5237.945 kb on - strand, within ABID97_RS25275 at 5238.277 kb on + strand, within ABID97_RS25275 at 5238.277 kb on + strand, within ABID97_RS25275 at 5238.278 kb on - strand, within ABID97_RS25275 at 5238.338 kb on + strand, within ABID97_RS25275 at 5238.461 kb on + strand at 5238.461 kb on + strand at 5238.462 kb on - strand at 5238.462 kb on - strand at 5238.462 kb on - strand at 5238.499 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 5,236,582 + +0.2 5,236,583 - +0.3 5,236,710 + +0.2 5,236,711 - +0.3 5,236,749 + +0.3 5,236,750 - +1.1 5,236,750 - +0.0 5,237,027 + ABID97_RS25270 0.32 -0.1 5,237,028 - +0.9 5,237,163 - ABID97_RS25270 0.46 +0.4 5,237,163 - ABID97_RS25270 0.46 +1.2 5,237,163 - ABID97_RS25270 0.46 +0.7 5,237,192 + ABID97_RS25270 0.49 -0.1 5,237,204 + ABID97_RS25270 0.51 +0.3 5,237,493 + +1.9 5,237,493 + ABID97_RS25270 0.81 -0.3 5,237,493 + ABID97_RS25270 0.81 +0.3 5,237,493 + ABID97_RS25270 0.81 -1.7 5,237,494 - ABID97_RS25270 0.81 +2.5 5,237,936 - ABID97_RS25275 0.31 +0.1 5,237,944 + ABID97_RS25275 0.32 -0.0 5,237,945 - ABID97_RS25275 0.32 -0.2 5,237,945 - ABID97_RS25275 0.32 -0.2 5,238,277 + ABID97_RS25275 0.73 +0.0 5,238,277 + ABID97_RS25275 0.73 -0.8 5,238,278 - ABID97_RS25275 0.73 -0.2 5,238,338 + ABID97_RS25275 0.80 +0.6 5,238,461 + -0.9 5,238,461 + +0.2 5,238,462 - +0.2 5,238,462 - +0.3 5,238,462 - -0.8 5,238,499 + +0.3
Or see this region's nucleotide sequence