Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13665

Experiment: D-Gluconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13650 and ABID97_RS13655 are separated by 10 nucleotidesABID97_RS13655 and ABID97_RS13660 overlap by 4 nucleotidesABID97_RS13660 and ABID97_RS13665 are separated by 7 nucleotidesABID97_RS13665 and ABID97_RS13670 are separated by 4 nucleotidesABID97_RS13670 and ABID97_RS13675 are separated by 30 nucleotides ABID97_RS13650: ABID97_RS13650 - hydrogenase expression/formation protein, at 2,842,683 to 2,843,549 _RS13650 ABID97_RS13655: ABID97_RS13655 - hydrogenase, at 2,843,560 to 2,844,063 _RS13655 ABID97_RS13660: ABID97_RS13660 - HypC/HybG/HupF family hydrogenase formation chaperone, at 2,844,060 to 2,844,404 _RS13660 ABID97_RS13665: ABID97_RS13665 - HyaD/HybD family hydrogenase maturation endopeptidase, at 2,844,412 to 2,845,047 _RS13665 ABID97_RS13670: ABID97_RS13670 - Ni/Fe-hydrogenase, b-type cytochrome subunit, at 2,845,052 to 2,845,780 _RS13670 ABID97_RS13675: ABID97_RS13675 - HupE/UreJ family protein, at 2,845,811 to 2,846,428 _RS13675 Position (kb) 2844 2845 2846Strain fitness (log2 ratio) -1 0 1at 2843.479 kb on + strandat 2843.480 kb on - strandat 2843.480 kb on - strandat 2843.480 kb on - strandat 2843.480 kb on - strandat 2844.498 kb on - strand, within ABID97_RS13665at 2845.134 kb on + strand, within ABID97_RS13670at 2845.134 kb on + strand, within ABID97_RS13670at 2845.193 kb on + strand, within ABID97_RS13670at 2845.365 kb on + strand, within ABID97_RS13670at 2845.429 kb on - strand, within ABID97_RS13670at 2845.495 kb on - strand, within ABID97_RS13670at 2845.690 kb on - strand, within ABID97_RS13670at 2845.695 kb on + strand, within ABID97_RS13670at 2845.696 kb on - strand, within ABID97_RS13670

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
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2,843,479 + -0.5
2,843,480 - +0.2
2,843,480 - -0.0
2,843,480 - -0.1
2,843,480 - +0.2
2,844,498 - ABID97_RS13665 0.14 +0.6
2,845,134 + ABID97_RS13670 0.11 -0.3
2,845,134 + ABID97_RS13670 0.11 -0.1
2,845,193 + ABID97_RS13670 0.19 +0.4
2,845,365 + ABID97_RS13670 0.43 +0.5
2,845,429 - ABID97_RS13670 0.52 +0.2
2,845,495 - ABID97_RS13670 0.61 -0.3
2,845,690 - ABID97_RS13670 0.88 +1.3
2,845,695 + ABID97_RS13670 0.88 +1.1
2,845,696 - ABID97_RS13670 0.88 +0.4

Or see this region's nucleotide sequence