Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS13635 and ABID97_RS13640 overlap by 4 nucleotides ABID97_RS13640 and ABID97_RS13645 overlap by 4 nucleotides ABID97_RS13645 and ABID97_RS13650 overlap by 4 nucleotides ABID97_RS13650 and ABID97_RS13655 are separated by 10 nucleotides ABID97_RS13655 and ABID97_RS13660 overlap by 4 nucleotides ABID97_RS13660 and ABID97_RS13665 are separated by 7 nucleotides
ABID97_RS13635: ABID97_RS13635 - hypothetical protein, at 2,840,766 to 2,841,905
_RS13635
ABID97_RS13640: ABID97_RS13640 - [NiFe]-hydrogenase assembly chaperone HybE, at 2,841,902 to 2,842,447
_RS13640
ABID97_RS13645: ABID97_RS13645 - rubredoxin, at 2,842,444 to 2,842,686
_RS13645
ABID97_RS13650: ABID97_RS13650 - hydrogenase expression/formation protein, at 2,842,683 to 2,843,549
_RS13650
ABID97_RS13655: ABID97_RS13655 - hydrogenase, at 2,843,560 to 2,844,063
_RS13655
ABID97_RS13660: ABID97_RS13660 - HypC/HybG/HupF family hydrogenase formation chaperone, at 2,844,060 to 2,844,404
_RS13660
ABID97_RS13665: ABID97_RS13665 - HyaD/HybD family hydrogenase maturation endopeptidase, at 2,844,412 to 2,845,047
_RS13665
Position (kb)
2842
2843
2844 Strain fitness (log2 ratio)
-1
0
1
2 at 2842.515 kb on - strand, within ABID97_RS13645 at 2842.583 kb on + strand, within ABID97_RS13645 at 2842.584 kb on - strand, within ABID97_RS13645 at 2842.584 kb on - strand, within ABID97_RS13645 at 2842.649 kb on + strand, within ABID97_RS13645 at 2842.649 kb on + strand, within ABID97_RS13645 at 2842.820 kb on - strand, within ABID97_RS13650 at 2842.820 kb on - strand, within ABID97_RS13650 at 2843.479 kb on + strand at 2843.480 kb on - strand at 2843.480 kb on - strand at 2843.480 kb on - strand at 2843.480 kb on - strand at 2844.498 kb on - strand, within ABID97_RS13665
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 2,842,515 - ABID97_RS13645 0.29 -0.5 2,842,583 + ABID97_RS13645 0.57 -0.4 2,842,584 - ABID97_RS13645 0.58 +0.0 2,842,584 - ABID97_RS13645 0.58 -1.0 2,842,649 + ABID97_RS13645 0.84 +0.3 2,842,649 + ABID97_RS13645 0.84 +0.2 2,842,820 - ABID97_RS13650 0.16 +1.8 2,842,820 - ABID97_RS13650 0.16 +0.1 2,843,479 + -0.5 2,843,480 - +0.2 2,843,480 - -0.0 2,843,480 - -0.1 2,843,480 - +0.2 2,844,498 - ABID97_RS13665 0.14 +0.6
Or see this region's nucleotide sequence