Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13650

Experiment: D-Gluconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13635 and ABID97_RS13640 overlap by 4 nucleotidesABID97_RS13640 and ABID97_RS13645 overlap by 4 nucleotidesABID97_RS13645 and ABID97_RS13650 overlap by 4 nucleotidesABID97_RS13650 and ABID97_RS13655 are separated by 10 nucleotidesABID97_RS13655 and ABID97_RS13660 overlap by 4 nucleotidesABID97_RS13660 and ABID97_RS13665 are separated by 7 nucleotides ABID97_RS13635: ABID97_RS13635 - hypothetical protein, at 2,840,766 to 2,841,905 _RS13635 ABID97_RS13640: ABID97_RS13640 - [NiFe]-hydrogenase assembly chaperone HybE, at 2,841,902 to 2,842,447 _RS13640 ABID97_RS13645: ABID97_RS13645 - rubredoxin, at 2,842,444 to 2,842,686 _RS13645 ABID97_RS13650: ABID97_RS13650 - hydrogenase expression/formation protein, at 2,842,683 to 2,843,549 _RS13650 ABID97_RS13655: ABID97_RS13655 - hydrogenase, at 2,843,560 to 2,844,063 _RS13655 ABID97_RS13660: ABID97_RS13660 - HypC/HybG/HupF family hydrogenase formation chaperone, at 2,844,060 to 2,844,404 _RS13660 ABID97_RS13665: ABID97_RS13665 - HyaD/HybD family hydrogenase maturation endopeptidase, at 2,844,412 to 2,845,047 _RS13665 Position (kb) 2842 2843 2844Strain fitness (log2 ratio) -1 0 1 2at 2842.515 kb on - strand, within ABID97_RS13645at 2842.583 kb on + strand, within ABID97_RS13645at 2842.584 kb on - strand, within ABID97_RS13645at 2842.584 kb on - strand, within ABID97_RS13645at 2842.649 kb on + strand, within ABID97_RS13645at 2842.649 kb on + strand, within ABID97_RS13645at 2842.820 kb on - strand, within ABID97_RS13650at 2842.820 kb on - strand, within ABID97_RS13650at 2843.479 kb on + strandat 2843.480 kb on - strandat 2843.480 kb on - strandat 2843.480 kb on - strandat 2843.480 kb on - strandat 2844.498 kb on - strand, within ABID97_RS13665

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
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2,842,515 - ABID97_RS13645 0.29 -0.5
2,842,583 + ABID97_RS13645 0.57 -0.4
2,842,584 - ABID97_RS13645 0.58 +0.0
2,842,584 - ABID97_RS13645 0.58 -1.0
2,842,649 + ABID97_RS13645 0.84 +0.3
2,842,649 + ABID97_RS13645 0.84 +0.2
2,842,820 - ABID97_RS13650 0.16 +1.8
2,842,820 - ABID97_RS13650 0.16 +0.1
2,843,479 + -0.5
2,843,480 - +0.2
2,843,480 - -0.0
2,843,480 - -0.1
2,843,480 - +0.2
2,844,498 - ABID97_RS13665 0.14 +0.6

Or see this region's nucleotide sequence