Strain Fitness in Variovorax sp. OAS795 around ABID97_RS09120

Experiment: D-Gluconic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS09110 and ABID97_RS09115 are separated by 12 nucleotidesABID97_RS09115 and ABID97_RS09120 are separated by 18 nucleotidesABID97_RS09120 and ABID97_RS09125 are separated by 24 nucleotides ABID97_RS09110: ABID97_RS09110 - type II secretion system F family protein, at 1,911,523 to 1,912,515 _RS09110 ABID97_RS09115: ABID97_RS09115 - type II secretion system F family protein, at 1,912,528 to 1,913,433 _RS09115 ABID97_RS09120: ABID97_RS09120 - response regulator transcription factor, at 1,913,452 to 1,914,147 _RS09120 ABID97_RS09125: ABID97_RS09125 - histidine kinase, at 1,914,172 to 1,915,863 _RS09125 Position (kb) 1913 1914 1915Strain fitness (log2 ratio) -1 0 1at 1913.495 kb on + strandat 1913.496 kb on - strandat 1913.531 kb on + strand, within ABID97_RS09120

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
remove
1,913,495 + +1.1
1,913,496 - +0.7
1,913,531 + ABID97_RS09120 0.11 +1.0

Or see this region's nucleotide sequence