Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04520 and ABID97_RS04525 are separated by 20 nucleotides ABID97_RS04525 and ABID97_RS04530 are separated by 43 nucleotides ABID97_RS04530 and ABID97_RS04535 are separated by 42 nucleotides
ABID97_RS04520: ABID97_RS04520 - MotA/TolQ/ExbB proton channel family protein, at 935,873 to 936,580
_RS04520
ABID97_RS04525: ABID97_RS04525 - biopolymer transporter ExbD, at 936,601 to 937,071
_RS04525
ABID97_RS04530: ABID97_RS04530 - glycogen/starch/alpha-glucan phosphorylase, at 937,115 to 939,598
_RS04530
ABID97_RS04535: ABID97_RS04535 - glycogen synthase GlgA, at 939,641 to 941,125
_RS04535
Position (kb) 937
938
939
940 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 936.314 kb on + strand, within ABID97_RS04520 at 936.315 kb on - strand, within ABID97_RS04520 at 936.444 kb on - strand, within ABID97_RS04520 at 936.579 kb on - strand at 936.970 kb on + strand, within ABID97_RS04525 at 937.116 kb on + strand at 937.158 kb on + strand at 937.158 kb on + strand at 937.159 kb on - strand at 937.279 kb on - strand at 937.279 kb on - strand at 937.279 kb on - strand at 937.287 kb on + strand at 937.306 kb on - strand at 937.335 kb on + strand at 937.335 kb on + strand at 937.335 kb on + strand at 937.335 kb on + strand at 937.336 kb on - strand at 937.336 kb on - strand at 937.425 kb on + strand, within ABID97_RS04530 at 937.425 kb on + strand, within ABID97_RS04530 at 937.425 kb on + strand, within ABID97_RS04530 at 937.426 kb on - strand, within ABID97_RS04530 at 937.426 kb on - strand, within ABID97_RS04530 at 937.677 kb on + strand, within ABID97_RS04530 at 937.677 kb on + strand, within ABID97_RS04530 at 937.678 kb on - strand, within ABID97_RS04530 at 937.914 kb on + strand, within ABID97_RS04530 at 937.914 kb on + strand, within ABID97_RS04530 at 937.914 kb on + strand, within ABID97_RS04530 at 937.914 kb on + strand, within ABID97_RS04530 at 937.914 kb on + strand, within ABID97_RS04530 at 937.914 kb on + strand, within ABID97_RS04530 at 937.915 kb on - strand, within ABID97_RS04530 at 938.304 kb on + strand, within ABID97_RS04530 at 938.421 kb on + strand, within ABID97_RS04530 at 938.511 kb on + strand, within ABID97_RS04530 at 938.511 kb on + strand, within ABID97_RS04530 at 938.512 kb on - strand, within ABID97_RS04530 at 938.512 kb on - strand, within ABID97_RS04530 at 938.512 kb on - strand, within ABID97_RS04530 at 938.823 kb on + strand, within ABID97_RS04530 at 938.823 kb on + strand, within ABID97_RS04530 at 938.824 kb on - strand, within ABID97_RS04530 at 938.824 kb on - strand, within ABID97_RS04530 at 938.824 kb on - strand, within ABID97_RS04530 at 938.824 kb on - strand, within ABID97_RS04530 at 938.931 kb on + strand, within ABID97_RS04530 at 938.931 kb on + strand, within ABID97_RS04530 at 939.033 kb on + strand, within ABID97_RS04530 at 939.034 kb on - strand, within ABID97_RS04530 at 939.034 kb on - strand, within ABID97_RS04530 at 939.139 kb on - strand, within ABID97_RS04530 at 939.312 kb on + strand, within ABID97_RS04530 at 939.376 kb on - strand at 939.376 kb on - strand at 939.376 kb on - strand at 939.376 kb on - strand at 939.378 kb on + strand at 939.402 kb on + strand at 939.403 kb on - strand at 939.516 kb on + strand at 939.517 kb on - strand at 939.517 kb on - strand at 939.576 kb on + strand at 939.576 kb on + strand at 939.673 kb on - strand at 939.924 kb on + strand, within ABID97_RS04535 at 939.925 kb on - strand, within ABID97_RS04535 at 939.936 kb on + strand, within ABID97_RS04535 at 939.937 kb on - strand, within ABID97_RS04535 at 940.026 kb on + strand, within ABID97_RS04535 at 940.027 kb on - strand, within ABID97_RS04535 at 940.449 kb on + strand, within ABID97_RS04535 at 940.450 kb on - strand, within ABID97_RS04535 at 940.450 kb on - strand, within ABID97_RS04535 at 940.450 kb on - strand, within ABID97_RS04535 at 940.482 kb on + strand, within ABID97_RS04535 at 940.522 kb on - strand, within ABID97_RS04535
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 936,314 + ABID97_RS04520 0.62 -0.9 936,315 - ABID97_RS04520 0.62 -0.4 936,444 - ABID97_RS04520 0.81 -0.9 936,579 - +0.8 936,970 + ABID97_RS04525 0.78 -0.2 937,116 + -0.1 937,158 + +0.2 937,158 + -0.4 937,159 - +0.1 937,279 - -1.0 937,279 - -0.4 937,279 - -0.2 937,287 + +1.0 937,306 - -0.2 937,335 + -0.5 937,335 + -0.1 937,335 + -0.6 937,335 + -0.5 937,336 - +0.3 937,336 - -0.4 937,425 + ABID97_RS04530 0.12 +1.2 937,425 + ABID97_RS04530 0.12 -0.1 937,425 + ABID97_RS04530 0.12 -0.4 937,426 - ABID97_RS04530 0.13 -0.0 937,426 - ABID97_RS04530 0.13 -0.6 937,677 + ABID97_RS04530 0.23 -0.5 937,677 + ABID97_RS04530 0.23 -0.9 937,678 - ABID97_RS04530 0.23 -0.6 937,914 + ABID97_RS04530 0.32 -0.0 937,914 + ABID97_RS04530 0.32 +0.3 937,914 + ABID97_RS04530 0.32 +0.9 937,914 + ABID97_RS04530 0.32 -0.3 937,914 + ABID97_RS04530 0.32 -0.4 937,914 + ABID97_RS04530 0.32 -0.2 937,915 - ABID97_RS04530 0.32 +0.3 938,304 + ABID97_RS04530 0.48 +0.3 938,421 + ABID97_RS04530 0.53 -0.5 938,511 + ABID97_RS04530 0.56 +0.2 938,511 + ABID97_RS04530 0.56 -0.2 938,512 - ABID97_RS04530 0.56 -3.2 938,512 - ABID97_RS04530 0.56 -0.4 938,512 - ABID97_RS04530 0.56 -0.4 938,823 + ABID97_RS04530 0.69 -0.5 938,823 + ABID97_RS04530 0.69 -0.5 938,824 - ABID97_RS04530 0.69 +0.1 938,824 - ABID97_RS04530 0.69 -0.1 938,824 - ABID97_RS04530 0.69 +0.3 938,824 - ABID97_RS04530 0.69 +0.1 938,931 + ABID97_RS04530 0.73 -1.1 938,931 + ABID97_RS04530 0.73 -0.6 939,033 + ABID97_RS04530 0.77 -0.2 939,034 - ABID97_RS04530 0.77 -0.6 939,034 - ABID97_RS04530 0.77 +0.1 939,139 - ABID97_RS04530 0.81 +0.1 939,312 + ABID97_RS04530 0.88 +0.0 939,376 - +0.6 939,376 - -0.3 939,376 - -0.3 939,376 - -0.7 939,378 + +1.9 939,402 + +0.1 939,403 - -0.1 939,516 + -0.1 939,517 - -0.2 939,517 - -0.2 939,576 + -0.0 939,576 + +0.2 939,673 - -0.0 939,924 + ABID97_RS04535 0.19 -0.1 939,925 - ABID97_RS04535 0.19 +0.3 939,936 + ABID97_RS04535 0.20 +0.1 939,937 - ABID97_RS04535 0.20 -0.9 940,026 + ABID97_RS04535 0.26 -0.4 940,027 - ABID97_RS04535 0.26 +0.2 940,449 + ABID97_RS04535 0.54 -0.4 940,450 - ABID97_RS04535 0.54 +0.3 940,450 - ABID97_RS04535 0.54 +0.6 940,450 - ABID97_RS04535 0.54 -0.4 940,482 + ABID97_RS04535 0.57 -0.4 940,522 - ABID97_RS04535 0.59 -0.2
Or see this region's nucleotide sequence