Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04110 and ABID97_RS04115 are separated by 194 nucleotides ABID97_RS04115 and ABID97_RS04120 are separated by 182 nucleotides ABID97_RS04120 and ABID97_RS04125 are separated by 5 nucleotides ABID97_RS04125 and ABID97_RS04130 are separated by 53 nucleotides
ABID97_RS04110: ABID97_RS04110 - tripartite tricarboxylate transporter TctB family protein, at 844,322 to 844,810
_RS04110
ABID97_RS04115: ABID97_RS04115 - RNA-binding protein, at 845,005 to 845,418
_RS04115
ABID97_RS04120: ABID97_RS04120 - DUF3820 family protein, at 845,601 to 845,834
_RS04120
ABID97_RS04125: ABID97_RS04125 - translation initiation factor Sui1, at 845,840 to 846,214
_RS04125
ABID97_RS04130: ABID97_RS04130 - DEAD/DEAH box helicase, at 846,268 to 847,545
_RS04130
Position (kb) 845
846 Strain fitness (log2 ratio) -1
0
1
2 at 844.725 kb on + strand, within ABID97_RS04110 at 844.725 kb on + strand, within ABID97_RS04110 at 844.725 kb on + strand, within ABID97_RS04110 at 844.725 kb on + strand, within ABID97_RS04110 at 844.725 kb on + strand, within ABID97_RS04110 at 844.725 kb on + strand, within ABID97_RS04110 at 844.726 kb on - strand, within ABID97_RS04110 at 844.726 kb on - strand, within ABID97_RS04110 at 844.726 kb on - strand, within ABID97_RS04110 at 844.726 kb on - strand, within ABID97_RS04110 at 844.726 kb on - strand, within ABID97_RS04110 at 844.726 kb on - strand, within ABID97_RS04110 at 844.726 kb on - strand, within ABID97_RS04110 at 844.726 kb on - strand, within ABID97_RS04110 at 844.894 kb on + strand at 844.894 kb on + strand at 844.894 kb on + strand at 844.894 kb on + strand at 844.894 kb on + strand at 844.894 kb on + strand at 844.894 kb on + strand at 845.006 kb on + strand at 845.006 kb on + strand at 845.007 kb on - strand at 845.007 kb on - strand at 845.007 kb on - strand at 845.007 kb on - strand at 845.007 kb on - strand at 845.007 kb on - strand at 845.007 kb on - strand at 845.010 kb on - strand at 845.010 kb on - strand at 845.370 kb on + strand, within ABID97_RS04115 at 845.384 kb on + strand at 845.398 kb on + strand at 845.398 kb on + strand at 845.398 kb on + strand at 845.399 kb on - strand at 845.399 kb on - strand at 845.399 kb on - strand at 845.402 kb on + strand at 845.403 kb on - strand at 845.403 kb on - strand at 845.403 kb on - strand at 845.431 kb on - strand at 845.446 kb on + strand at 845.446 kb on + strand at 845.446 kb on + strand at 845.447 kb on - strand at 845.447 kb on - strand at 845.447 kb on - strand at 845.447 kb on - strand at 845.447 kb on - strand at 845.447 kb on - strand at 845.447 kb on - strand at 845.519 kb on + strand at 845.519 kb on + strand at 845.599 kb on + strand at 845.670 kb on + strand, within ABID97_RS04120 at 845.671 kb on - strand, within ABID97_RS04120 at 845.671 kb on - strand, within ABID97_RS04120 at 846.174 kb on + strand, within ABID97_RS04125 at 846.175 kb on - strand, within ABID97_RS04125 at 846.175 kb on - strand, within ABID97_RS04125 at 846.175 kb on - strand, within ABID97_RS04125 at 846.329 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 844,725 + ABID97_RS04110 0.82 +1.2 844,725 + ABID97_RS04110 0.82 +1.2 844,725 + ABID97_RS04110 0.82 +0.8 844,725 + ABID97_RS04110 0.82 +0.7 844,725 + ABID97_RS04110 0.82 +1.0 844,725 + ABID97_RS04110 0.82 +0.9 844,726 - ABID97_RS04110 0.83 +1.1 844,726 - ABID97_RS04110 0.83 +0.7 844,726 - ABID97_RS04110 0.83 +0.1 844,726 - ABID97_RS04110 0.83 +1.1 844,726 - ABID97_RS04110 0.83 +1.2 844,726 - ABID97_RS04110 0.83 +0.9 844,726 - ABID97_RS04110 0.83 +1.3 844,726 - ABID97_RS04110 0.83 +0.8 844,894 + +1.3 844,894 + +1.1 844,894 + +0.9 844,894 + +0.9 844,894 + +0.8 844,894 + +0.7 844,894 + +0.3 845,006 + +1.2 845,006 + +0.8 845,007 - +1.5 845,007 - +1.2 845,007 - +0.5 845,007 - +0.8 845,007 - +0.7 845,007 - +1.8 845,007 - +1.3 845,010 - +0.9 845,010 - +1.1 845,370 + ABID97_RS04115 0.88 +1.9 845,384 + +1.2 845,398 + -0.1 845,398 + +1.6 845,398 + +1.3 845,399 - +1.1 845,399 - +1.9 845,399 - +1.2 845,402 + +1.0 845,403 - +1.6 845,403 - +1.1 845,403 - +1.4 845,431 - +1.4 845,446 + +1.0 845,446 + +1.4 845,446 + +1.3 845,447 - +0.6 845,447 - +1.2 845,447 - +1.5 845,447 - +1.6 845,447 - +1.1 845,447 - +1.3 845,447 - +1.2 845,519 + -0.1 845,519 + +2.2 845,599 + +1.2 845,670 + ABID97_RS04120 0.29 +1.2 845,671 - ABID97_RS04120 0.30 +0.4 845,671 - ABID97_RS04120 0.30 +1.1 846,174 + ABID97_RS04125 0.89 +0.3 846,175 - ABID97_RS04125 0.89 +0.7 846,175 - ABID97_RS04125 0.89 +0.9 846,175 - ABID97_RS04125 0.89 +0.4 846,329 - +0.9
Or see this region's nucleotide sequence