Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02885

Experiment: D-Gluconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02875 and ABID97_RS02880 overlap by 4 nucleotidesABID97_RS02880 and ABID97_RS02885 are separated by 141 nucleotidesABID97_RS02885 and ABID97_RS02890 are separated by 190 nucleotidesABID97_RS02890 and ABID97_RS02895 overlap by 1 nucleotidesABID97_RS02895 and ABID97_RS02900 are separated by 7 nucleotides ABID97_RS02875: ABID97_RS02875 - acyclic terpene utilization AtuA family protein, at 587,400 to 589,247 _RS02875 ABID97_RS02880: ABID97_RS02880 - enoyl-CoA hydratase-related protein, at 589,244 to 590,026 _RS02880 ABID97_RS02885: ABID97_RS02885 - glutathione transferase GstA, at 590,168 to 590,776 _RS02885 ABID97_RS02890: ABID97_RS02890 - DUF1328 family protein, at 590,967 to 591,152 _RS02890 ABID97_RS02895: ABID97_RS02895 - hypothetical protein, at 591,152 to 591,298 _RS02895 ABID97_RS02900: ABID97_RS02900 - transglutaminase family protein, at 591,306 to 592,193 _RS02900 Position (kb) 590 591Strain fitness (log2 ratio) -1 0 1 2at 589.392 kb on + strand, within ABID97_RS02880at 589.392 kb on + strand, within ABID97_RS02880at 589.392 kb on + strand, within ABID97_RS02880at 589.392 kb on + strand, within ABID97_RS02880at 589.392 kb on + strand, within ABID97_RS02880at 589.393 kb on - strand, within ABID97_RS02880at 589.393 kb on - strand, within ABID97_RS02880at 589.393 kb on - strand, within ABID97_RS02880at 589.393 kb on - strand, within ABID97_RS02880at 589.393 kb on - strand, within ABID97_RS02880at 589.393 kb on - strand, within ABID97_RS02880at 589.406 kb on + strand, within ABID97_RS02880at 590.064 kb on + strandat 590.064 kb on + strandat 590.065 kb on - strandat 590.159 kb on + strandat 590.159 kb on + strandat 590.159 kb on + strandat 590.160 kb on - strandat 590.160 kb on - strandat 590.160 kb on - strandat 590.169 kb on + strandat 590.169 kb on + strandat 590.169 kb on + strandat 590.169 kb on + strandat 590.170 kb on - strandat 590.170 kb on - strandat 590.307 kb on + strand, within ABID97_RS02885at 590.307 kb on + strand, within ABID97_RS02885at 590.307 kb on + strand, within ABID97_RS02885at 590.307 kb on + strand, within ABID97_RS02885at 590.308 kb on - strand, within ABID97_RS02885at 590.343 kb on + strand, within ABID97_RS02885at 590.343 kb on + strand, within ABID97_RS02885at 590.343 kb on + strand, within ABID97_RS02885at 590.343 kb on + strand, within ABID97_RS02885at 590.344 kb on - strand, within ABID97_RS02885at 590.344 kb on - strand, within ABID97_RS02885at 590.344 kb on - strand, within ABID97_RS02885at 590.379 kb on + strand, within ABID97_RS02885at 590.379 kb on + strand, within ABID97_RS02885at 590.379 kb on + strand, within ABID97_RS02885at 590.380 kb on - strand, within ABID97_RS02885at 590.452 kb on - strand, within ABID97_RS02885at 590.452 kb on - strand, within ABID97_RS02885at 590.562 kb on + strand, within ABID97_RS02885at 590.562 kb on + strand, within ABID97_RS02885at 590.562 kb on + strand, within ABID97_RS02885at 590.562 kb on + strand, within ABID97_RS02885at 590.562 kb on + strand, within ABID97_RS02885at 590.562 kb on + strand, within ABID97_RS02885at 590.562 kb on + strand, within ABID97_RS02885at 590.562 kb on + strand, within ABID97_RS02885at 590.562 kb on + strand, within ABID97_RS02885at 590.562 kb on + strand, within ABID97_RS02885at 590.562 kb on + strand, within ABID97_RS02885at 590.563 kb on - strand, within ABID97_RS02885at 590.563 kb on - strand, within ABID97_RS02885at 590.563 kb on - strand, within ABID97_RS02885at 590.563 kb on - strand, within ABID97_RS02885at 590.563 kb on - strand, within ABID97_RS02885at 590.625 kb on + strand, within ABID97_RS02885at 590.625 kb on + strand, within ABID97_RS02885at 590.625 kb on + strand, within ABID97_RS02885at 590.626 kb on - strand, within ABID97_RS02885at 590.626 kb on - strand, within ABID97_RS02885at 590.626 kb on - strand, within ABID97_RS02885at 590.646 kb on + strand, within ABID97_RS02885at 590.646 kb on + strand, within ABID97_RS02885at 590.646 kb on + strand, within ABID97_RS02885at 590.647 kb on - strand, within ABID97_RS02885at 590.649 kb on + strand, within ABID97_RS02885at 590.649 kb on + strand, within ABID97_RS02885at 590.649 kb on + strand, within ABID97_RS02885at 590.650 kb on - strand, within ABID97_RS02885at 590.650 kb on - strand, within ABID97_RS02885at 590.763 kb on + strandat 590.763 kb on + strandat 590.763 kb on + strandat 590.763 kb on + strandat 590.763 kb on + strandat 590.763 kb on + strandat 590.763 kb on + strandat 590.764 kb on - strandat 590.764 kb on - strandat 590.764 kb on - strandat 590.764 kb on - strandat 590.766 kb on + strandat 590.766 kb on + strandat 590.767 kb on - strandat 590.767 kb on - strandat 590.767 kb on - strandat 590.767 kb on - strandat 590.767 kb on - strandat 590.767 kb on - strandat 590.767 kb on - strandat 590.767 kb on - strandat 590.869 kb on + strandat 590.917 kb on + strandat 590.917 kb on + strandat 590.917 kb on + strandat 590.917 kb on + strandat 590.918 kb on - strandat 590.918 kb on - strandat 590.918 kb on - strandat 590.918 kb on - strandat 590.918 kb on - strandat 590.952 kb on + strandat 590.952 kb on + strandat 590.976 kb on + strandat 590.976 kb on + strandat 590.977 kb on - strandat 590.984 kb on + strandat 590.985 kb on - strandat 590.985 kb on - strandat 591.340 kb on - strandat 591.453 kb on + strand, within ABID97_RS02900at 591.453 kb on + strand, within ABID97_RS02900at 591.453 kb on + strand, within ABID97_RS02900at 591.454 kb on - strand, within ABID97_RS02900at 591.454 kb on - strand, within ABID97_RS02900at 591.454 kb on - strand, within ABID97_RS02900at 591.454 kb on - strand, within ABID97_RS02900at 591.454 kb on - strand, within ABID97_RS02900at 591.612 kb on + strand, within ABID97_RS02900at 591.612 kb on + strand, within ABID97_RS02900at 591.612 kb on + strandat 591.612 kb on + strand, within ABID97_RS02900at 591.612 kb on + strand, within ABID97_RS02900at 591.612 kb on + strand, within ABID97_RS02900at 591.612 kb on + strand, within ABID97_RS02900at 591.612 kb on + strand, within ABID97_RS02900at 591.612 kb on + strand, within ABID97_RS02900at 591.613 kb on - strand, within ABID97_RS02900at 591.613 kb on - strand, within ABID97_RS02900at 591.613 kb on - strand, within ABID97_RS02900at 591.613 kb on - strand, within ABID97_RS02900at 591.613 kb on - strand, within ABID97_RS02900at 591.613 kb on - strand, within ABID97_RS02900at 591.613 kb on - strand, within ABID97_RS02900at 591.613 kb on - strand, within ABID97_RS02900at 591.741 kb on + strand, within ABID97_RS02900at 591.742 kb on - strand, within ABID97_RS02900at 591.742 kb on - strand, within ABID97_RS02900

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
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589,392 + ABID97_RS02880 0.19 -0.4
589,392 + ABID97_RS02880 0.19 +0.3
589,392 + ABID97_RS02880 0.19 -0.1
589,392 + ABID97_RS02880 0.19 -1.3
589,392 + ABID97_RS02880 0.19 -1.2
589,393 - ABID97_RS02880 0.19 +0.4
589,393 - ABID97_RS02880 0.19 -0.4
589,393 - ABID97_RS02880 0.19 +1.0
589,393 - ABID97_RS02880 0.19 +0.4
589,393 - ABID97_RS02880 0.19 +0.1
589,393 - ABID97_RS02880 0.19 -0.3
589,406 + ABID97_RS02880 0.21 +0.2
590,064 + -0.4
590,064 + -0.2
590,065 - +0.3
590,159 + -0.4
590,159 + -0.5
590,159 + +0.2
590,160 - -0.2
590,160 - +0.2
590,160 - +0.3
590,169 + +0.1
590,169 + -0.3
590,169 + +0.3
590,169 + +0.3
590,170 - +1.4
590,170 - -1.0
590,307 + ABID97_RS02885 0.23 +0.8
590,307 + ABID97_RS02885 0.23 -0.2
590,307 + ABID97_RS02885 0.23 -0.3
590,307 + ABID97_RS02885 0.23 -0.3
590,308 - ABID97_RS02885 0.23 -0.2
590,343 + ABID97_RS02885 0.29 +0.1
590,343 + ABID97_RS02885 0.29 -0.2
590,343 + ABID97_RS02885 0.29 -0.0
590,343 + ABID97_RS02885 0.29 +1.3
590,344 - ABID97_RS02885 0.29 -1.0
590,344 - ABID97_RS02885 0.29 -0.2
590,344 - ABID97_RS02885 0.29 +0.0
590,379 + ABID97_RS02885 0.35 -0.4
590,379 + ABID97_RS02885 0.35 -0.3
590,379 + ABID97_RS02885 0.35 +0.1
590,380 - ABID97_RS02885 0.35 +2.6
590,452 - ABID97_RS02885 0.47 +0.2
590,452 - ABID97_RS02885 0.47 -0.4
590,562 + ABID97_RS02885 0.65 +0.2
590,562 + ABID97_RS02885 0.65 -0.7
590,562 + ABID97_RS02885 0.65 -0.1
590,562 + ABID97_RS02885 0.65 -0.2
590,562 + ABID97_RS02885 0.65 -0.1
590,562 + ABID97_RS02885 0.65 +0.9
590,562 + ABID97_RS02885 0.65 -0.0
590,562 + ABID97_RS02885 0.65 -0.3
590,562 + ABID97_RS02885 0.65 -0.4
590,562 + ABID97_RS02885 0.65 -1.2
590,562 + ABID97_RS02885 0.65 +0.0
590,563 - ABID97_RS02885 0.65 +0.0
590,563 - ABID97_RS02885 0.65 +0.1
590,563 - ABID97_RS02885 0.65 +0.6
590,563 - ABID97_RS02885 0.65 -0.5
590,563 - ABID97_RS02885 0.65 -0.4
590,625 + ABID97_RS02885 0.75 -0.0
590,625 + ABID97_RS02885 0.75 -0.6
590,625 + ABID97_RS02885 0.75 -0.9
590,626 - ABID97_RS02885 0.75 -1.3
590,626 - ABID97_RS02885 0.75 -0.9
590,626 - ABID97_RS02885 0.75 -0.4
590,646 + ABID97_RS02885 0.78 -1.3
590,646 + ABID97_RS02885 0.78 -0.4
590,646 + ABID97_RS02885 0.78 -0.1
590,647 - ABID97_RS02885 0.79 +0.1
590,649 + ABID97_RS02885 0.79 +0.0
590,649 + ABID97_RS02885 0.79 -0.2
590,649 + ABID97_RS02885 0.79 -0.5
590,650 - ABID97_RS02885 0.79 -0.1
590,650 - ABID97_RS02885 0.79 -0.3
590,763 + +0.2
590,763 + -0.2
590,763 + -0.4
590,763 + -1.0
590,763 + -0.2
590,763 + -0.1
590,763 + -0.4
590,764 - +0.3
590,764 - +0.2
590,764 - -0.3
590,764 - -1.3
590,766 + -0.7
590,766 + +0.1
590,767 - +0.3
590,767 - +0.7
590,767 - +0.2
590,767 - -0.2
590,767 - -0.8
590,767 - +0.7
590,767 - +0.8
590,767 - -0.3
590,869 + +0.0
590,917 + +0.4
590,917 + -0.2
590,917 + +0.4
590,917 + -1.1
590,918 - +0.4
590,918 - -0.1
590,918 - -0.2
590,918 - +0.3
590,918 - -0.9
590,952 + -0.4
590,952 + -0.5
590,976 + -0.1
590,976 + -0.2
590,977 - -0.3
590,984 + +0.5
590,985 - -0.3
590,985 - +0.4
591,340 - +0.8
591,453 + ABID97_RS02900 0.17 -0.3
591,453 + ABID97_RS02900 0.17 -0.1
591,453 + ABID97_RS02900 0.17 -1.3
591,454 - ABID97_RS02900 0.17 -0.0
591,454 - ABID97_RS02900 0.17 +0.7
591,454 - ABID97_RS02900 0.17 -0.1
591,454 - ABID97_RS02900 0.17 -0.8
591,454 - ABID97_RS02900 0.17 -0.2
591,612 + ABID97_RS02900 0.34 +0.4
591,612 + ABID97_RS02900 0.34 +1.0
591,612 + +2.0
591,612 + ABID97_RS02900 0.34 +0.2
591,612 + ABID97_RS02900 0.34 +0.1
591,612 + ABID97_RS02900 0.34 +0.6
591,612 + ABID97_RS02900 0.34 -0.1
591,612 + ABID97_RS02900 0.34 -0.7
591,612 + ABID97_RS02900 0.34 +0.3
591,613 - ABID97_RS02900 0.35 +0.1
591,613 - ABID97_RS02900 0.35 -0.7
591,613 - ABID97_RS02900 0.35 -1.3
591,613 - ABID97_RS02900 0.35 -0.0
591,613 - ABID97_RS02900 0.35 +0.1
591,613 - ABID97_RS02900 0.35 +0.8
591,613 - ABID97_RS02900 0.35 -1.5
591,613 - ABID97_RS02900 0.35 +0.5
591,741 + ABID97_RS02900 0.49 +1.4
591,742 - ABID97_RS02900 0.49 +0.2
591,742 - ABID97_RS02900 0.49 +0.2

Or see this region's nucleotide sequence