Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00325 and ABID97_RS00330 overlap by 4 nucleotides ABID97_RS00330 and ABID97_RS00335 are separated by 115 nucleotides ABID97_RS00335 and ABID97_RS00340 are separated by 70 nucleotides
ABID97_RS00325: ABID97_RS00325 - efflux RND transporter permease subunit, at 72,703 to 75,864
_RS00325
ABID97_RS00330: ABID97_RS00330 - efflux transporter outer membrane subunit, at 75,861 to 77,285
_RS00330
ABID97_RS00335: ABID97_RS00335 - c-type cytochrome, at 77,401 to 78,027
_RS00335
ABID97_RS00340: ABID97_RS00340 - DUF2946 family protein, at 78,098 to 78,646
_RS00340
Position (kb) 75
76
77
78 Strain fitness (log2 ratio) -1
0
1
2 at 74.962 kb on + strand, within ABID97_RS00325 at 74.962 kb on + strand, within ABID97_RS00325 at 74.962 kb on + strand, within ABID97_RS00325 at 74.962 kb on + strand, within ABID97_RS00325 at 74.963 kb on - strand, within ABID97_RS00325 at 75.145 kb on + strand, within ABID97_RS00325 at 75.364 kb on + strand, within ABID97_RS00325 at 75.365 kb on - strand at 75.452 kb on - strand, within ABID97_RS00325 at 75.466 kb on + strand, within ABID97_RS00325 at 75.467 kb on - strand, within ABID97_RS00325 at 75.467 kb on - strand, within ABID97_RS00325 at 75.467 kb on - strand, within ABID97_RS00325 at 75.467 kb on - strand, within ABID97_RS00325 at 75.929 kb on + strand at 75.929 kb on + strand at 75.930 kb on - strand at 75.930 kb on - strand at 75.933 kb on + strand at 75.933 kb on + strand at 76.203 kb on + strand, within ABID97_RS00330 at 76.204 kb on - strand, within ABID97_RS00330 at 76.204 kb on - strand, within ABID97_RS00330 at 76.245 kb on + strand, within ABID97_RS00330 at 76.246 kb on - strand, within ABID97_RS00330 at 76.246 kb on - strand, within ABID97_RS00330 at 76.246 kb on - strand, within ABID97_RS00330 at 76.329 kb on + strand, within ABID97_RS00330 at 76.329 kb on + strand, within ABID97_RS00330 at 76.329 kb on + strand, within ABID97_RS00330 at 76.329 kb on + strand, within ABID97_RS00330 at 76.329 kb on + strand, within ABID97_RS00330 at 76.330 kb on - strand, within ABID97_RS00330 at 76.560 kb on + strand, within ABID97_RS00330 at 76.561 kb on - strand, within ABID97_RS00330 at 76.561 kb on - strand, within ABID97_RS00330 at 76.984 kb on - strand, within ABID97_RS00330 at 77.175 kb on + strand at 77.238 kb on + strand at 77.342 kb on + strand at 77.342 kb on + strand at 77.342 kb on + strand at 77.342 kb on + strand at 77.343 kb on - strand at 77.343 kb on - strand at 77.343 kb on - strand at 77.343 kb on - strand at 77.345 kb on - strand at 77.419 kb on + strand at 77.419 kb on + strand at 77.419 kb on + strand at 77.420 kb on - strand at 77.420 kb on - strand at 77.533 kb on + strand, within ABID97_RS00335 at 77.533 kb on + strand, within ABID97_RS00335 at 77.534 kb on - strand, within ABID97_RS00335 at 77.534 kb on - strand, within ABID97_RS00335 at 77.534 kb on - strand, within ABID97_RS00335 at 77.534 kb on - strand, within ABID97_RS00335 at 77.534 kb on - strand, within ABID97_RS00335 at 77.590 kb on + strand, within ABID97_RS00335 at 77.590 kb on + strand, within ABID97_RS00335 at 77.800 kb on + strand, within ABID97_RS00335 at 77.899 kb on + strand, within ABID97_RS00335 at 77.899 kb on + strand, within ABID97_RS00335 at 77.900 kb on - strand, within ABID97_RS00335 at 78.025 kb on + strand at 78.025 kb on + strand at 78.025 kb on + strand at 78.026 kb on - strand at 78.026 kb on - strand at 78.026 kb on - strand at 78.026 kb on - strand at 78.108 kb on - strand at 78.273 kb on + strand, within ABID97_RS00340 at 78.273 kb on + strand, within ABID97_RS00340 at 78.274 kb on - strand, within ABID97_RS00340 at 78.274 kb on - strand, within ABID97_RS00340
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 74,962 + ABID97_RS00325 0.71 +0.5 74,962 + ABID97_RS00325 0.71 -0.0 74,962 + ABID97_RS00325 0.71 -0.4 74,962 + ABID97_RS00325 0.71 +0.9 74,963 - ABID97_RS00325 0.71 +0.2 75,145 + ABID97_RS00325 0.77 +0.2 75,364 + ABID97_RS00325 0.84 +0.2 75,365 - +2.0 75,452 - ABID97_RS00325 0.87 +0.4 75,466 + ABID97_RS00325 0.87 +0.4 75,467 - ABID97_RS00325 0.87 +0.3 75,467 - ABID97_RS00325 0.87 +0.3 75,467 - ABID97_RS00325 0.87 -0.1 75,467 - ABID97_RS00325 0.87 -0.4 75,929 + +0.0 75,929 + +0.2 75,930 - +0.2 75,930 - -0.7 75,933 + +1.1 75,933 + -0.4 76,203 + ABID97_RS00330 0.24 -0.2 76,204 - ABID97_RS00330 0.24 +0.0 76,204 - ABID97_RS00330 0.24 +0.6 76,245 + ABID97_RS00330 0.27 -0.2 76,246 - ABID97_RS00330 0.27 +0.1 76,246 - ABID97_RS00330 0.27 +0.2 76,246 - ABID97_RS00330 0.27 +0.0 76,329 + ABID97_RS00330 0.33 -1.4 76,329 + ABID97_RS00330 0.33 +0.6 76,329 + ABID97_RS00330 0.33 +0.4 76,329 + ABID97_RS00330 0.33 +0.3 76,329 + ABID97_RS00330 0.33 +0.4 76,330 - ABID97_RS00330 0.33 -0.6 76,560 + ABID97_RS00330 0.49 -0.0 76,561 - ABID97_RS00330 0.49 -0.2 76,561 - ABID97_RS00330 0.49 -0.7 76,984 - ABID97_RS00330 0.79 +0.1 77,175 + -0.4 77,238 + -0.2 77,342 + -0.3 77,342 + +0.5 77,342 + +2.4 77,342 + +0.6 77,343 - -0.1 77,343 - +0.1 77,343 - +0.5 77,343 - +0.3 77,345 - +0.4 77,419 + -0.5 77,419 + -0.6 77,419 + -0.8 77,420 - -0.6 77,420 - -0.9 77,533 + ABID97_RS00335 0.21 -1.1 77,533 + ABID97_RS00335 0.21 -0.7 77,534 - ABID97_RS00335 0.21 -0.3 77,534 - ABID97_RS00335 0.21 +0.2 77,534 - ABID97_RS00335 0.21 -0.7 77,534 - ABID97_RS00335 0.21 +0.2 77,534 - ABID97_RS00335 0.21 +0.2 77,590 + ABID97_RS00335 0.30 -0.3 77,590 + ABID97_RS00335 0.30 -1.6 77,800 + ABID97_RS00335 0.64 +1.5 77,899 + ABID97_RS00335 0.79 -1.0 77,899 + ABID97_RS00335 0.79 -0.9 77,900 - ABID97_RS00335 0.80 -0.1 78,025 + +0.1 78,025 + +0.1 78,025 + +0.5 78,026 - +0.2 78,026 - -0.2 78,026 - +0.8 78,026 - -0.0 78,108 - -0.3 78,273 + ABID97_RS00340 0.32 -0.9 78,273 + ABID97_RS00340 0.32 -0.6 78,274 - ABID97_RS00340 0.32 -0.3 78,274 - ABID97_RS00340 0.32 -0.5
Or see this region's nucleotide sequence