Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dinG and ybiB are separated by 27 nucleotides ybiB and ybiC are separated by 140 nucleotides
b0799: dinG - ATP-dependent DNA helicase (NCBI), at 832,293 to 834,443
dinG
b0800: ybiB - hypothetical protein (NCBI), at 834,471 to 835,433
ybiB
b0801: ybiC - predicted dehydrogenase (NCBI), at 835,574 to 836,659
ybiC
Position (kb) 834
835
836 Strain fitness (log2 ratio) -1
0
1 at 833.538 kb on + strand, within dinG at 833.538 kb on + strand, within dinG at 833.644 kb on + strand, within dinG at 833.644 kb on + strand, within dinG at 833.658 kb on + strand, within dinG at 833.658 kb on + strand, within dinG at 833.791 kb on + strand, within dinG at 834.071 kb on - strand, within dinG at 834.071 kb on - strand, within dinG at 834.154 kb on + strand, within dinG at 834.154 kb on + strand, within dinG at 834.347 kb on - strand at 834.347 kb on - strand at 834.349 kb on - strand at 834.349 kb on - strand at 834.535 kb on + strand at 834.535 kb on + strand at 834.550 kb on + strand at 834.559 kb on + strand at 834.559 kb on + strand at 834.564 kb on - strand at 834.564 kb on - strand at 834.642 kb on + strand, within ybiB at 834.642 kb on + strand, within ybiB at 834.734 kb on - strand, within ybiB at 834.799 kb on + strand, within ybiB at 835.009 kb on - strand, within ybiB at 835.090 kb on + strand, within ybiB at 835.163 kb on + strand, within ybiB at 835.179 kb on - strand, within ybiB at 835.207 kb on + strand, within ybiB at 835.207 kb on + strand, within ybiB at 835.239 kb on - strand, within ybiB at 835.239 kb on - strand, within ybiB at 835.294 kb on - strand, within ybiB at 835.454 kb on + strand at 835.607 kb on + strand at 835.607 kb on + strand at 835.652 kb on - strand at 835.747 kb on + strand, within ybiC at 835.801 kb on + strand, within ybiC at 835.801 kb on + strand, within ybiC at 835.836 kb on + strand, within ybiC at 835.836 kb on + strand, within ybiC at 835.971 kb on - strand, within ybiC at 836.021 kb on - strand, within ybiC at 836.278 kb on + strand, within ybiC at 836.278 kb on + strand, within ybiC at 836.362 kb on - strand, within ybiC at 836.383 kb on - strand, within ybiC
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 833,538 + dinG b0799 0.58 +0.9 833,538 + dinG b0799 0.58 -0.1 833,644 + dinG b0799 0.63 +0.4 833,644 + dinG b0799 0.63 +0.2 833,658 + dinG b0799 0.63 -0.5 833,658 + dinG b0799 0.63 -0.4 833,791 + dinG b0799 0.70 -0.7 834,071 - dinG b0799 0.83 +0.9 834,071 - dinG b0799 0.83 +0.2 834,154 + dinG b0799 0.87 -0.1 834,154 + dinG b0799 0.87 -0.2 834,347 - -0.4 834,347 - +1.1 834,349 - +0.7 834,349 - +0.3 834,535 + -0.2 834,535 + -0.6 834,550 + -0.6 834,559 + -0.0 834,559 + +0.8 834,564 - -0.0 834,564 - +0.1 834,642 + ybiB b0800 0.18 +0.5 834,642 + ybiB b0800 0.18 +0.4 834,734 - ybiB b0800 0.27 -0.2 834,799 + ybiB b0800 0.34 -0.0 835,009 - ybiB b0800 0.56 +0.2 835,090 + ybiB b0800 0.64 -0.3 835,163 + ybiB b0800 0.72 +0.5 835,179 - ybiB b0800 0.74 +0.4 835,207 + ybiB b0800 0.76 -0.3 835,207 + ybiB b0800 0.76 +0.4 835,239 - ybiB b0800 0.80 -1.1 835,239 - ybiB b0800 0.80 +0.1 835,294 - ybiB b0800 0.85 +1.0 835,454 + -1.1 835,607 + -0.0 835,607 + -0.2 835,652 - -0.9 835,747 + ybiC b0801 0.16 +0.3 835,801 + ybiC b0801 0.21 -0.9 835,801 + ybiC b0801 0.21 +1.1 835,836 + ybiC b0801 0.24 -0.2 835,836 + ybiC b0801 0.24 -0.2 835,971 - ybiC b0801 0.37 -0.1 836,021 - ybiC b0801 0.41 +0.5 836,278 + ybiC b0801 0.65 +0.3 836,278 + ybiC b0801 0.65 +0.5 836,362 - ybiC b0801 0.73 -0.1 836,383 - ybiC b0801 0.74 -0.2
Or see this region's nucleotide sequence