Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ykgD and ykgE are separated by 526 nucleotides ykgE and ykgF are separated by 10 nucleotides
b0305: ykgD - predicted DNA-binding transcriptional regulator (NCBI), at 319,451 to 320,305
ykgD
b0306: ykgE - predicted oxidoreductase (NCBI), at 320,832 to 321,551
ykgE
b0307: ykgF - predicted amino acid dehydrogenase with NAD(P)-binding domain and ferridoxin-like domain (NCBI), at 321,562 to 322,989
ykgF
Position (kb) 320
321
322 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 319.877 kb on + strand, within ykgD at 319.886 kb on + strand, within ykgD at 319.886 kb on + strand, within ykgD at 319.890 kb on - strand, within ykgD at 319.890 kb on - strand, within ykgD at 319.899 kb on - strand, within ykgD at 319.899 kb on - strand, within ykgD at 319.901 kb on + strand, within ykgD at 319.906 kb on - strand, within ykgD at 319.939 kb on + strand, within ykgD at 319.939 kb on + strand, within ykgD at 319.939 kb on + strand, within ykgD at 319.939 kb on + strand, within ykgD at 319.947 kb on - strand, within ykgD at 319.947 kb on - strand, within ykgD at 319.949 kb on + strand, within ykgD at 319.992 kb on + strand, within ykgD at 319.992 kb on + strand, within ykgD at 320.034 kb on - strand, within ykgD at 320.034 kb on - strand, within ykgD at 320.034 kb on - strand, within ykgD at 320.047 kb on + strand, within ykgD at 320.055 kb on - strand, within ykgD at 320.057 kb on + strand, within ykgD at 320.065 kb on - strand, within ykgD at 320.065 kb on - strand, within ykgD at 320.065 kb on - strand, within ykgD at 320.181 kb on + strand, within ykgD at 320.181 kb on + strand, within ykgD at 320.183 kb on + strand, within ykgD at 320.183 kb on + strand, within ykgD at 320.183 kb on + strand, within ykgD at 320.191 kb on - strand, within ykgD at 320.191 kb on - strand, within ykgD at 320.194 kb on - strand, within ykgD at 320.207 kb on + strand, within ykgD at 320.215 kb on - strand, within ykgD at 320.254 kb on + strand at 320.278 kb on + strand at 320.278 kb on + strand at 320.283 kb on + strand at 320.283 kb on + strand at 320.283 kb on + strand at 320.283 kb on + strand at 320.292 kb on + strand at 320.293 kb on + strand at 320.293 kb on + strand at 320.299 kb on + strand at 320.343 kb on + strand at 320.387 kb on + strand at 320.576 kb on - strand at 320.654 kb on - strand at 320.723 kb on + strand at 320.728 kb on + strand at 320.729 kb on + strand at 320.729 kb on - strand at 320.731 kb on - strand at 320.781 kb on - strand at 320.788 kb on - strand at 320.788 kb on - strand at 320.807 kb on + strand at 320.813 kb on + strand at 320.815 kb on - strand at 320.821 kb on - strand at 320.865 kb on - strand at 320.883 kb on - strand at 320.884 kb on - strand at 320.886 kb on + strand at 320.886 kb on + strand at 320.894 kb on + strand at 320.894 kb on + strand at 320.898 kb on + strand at 320.898 kb on + strand at 320.899 kb on - strand at 320.901 kb on - strand at 320.904 kb on - strand, within ykgE at 320.944 kb on + strand, within ykgE at 320.944 kb on + strand, within ykgE at 320.959 kb on + strand, within ykgE at 320.959 kb on + strand, within ykgE at 320.971 kb on - strand, within ykgE at 320.975 kb on - strand, within ykgE at 320.975 kb on - strand, within ykgE at 320.977 kb on - strand, within ykgE at 320.978 kb on - strand, within ykgE at 320.983 kb on + strand, within ykgE at 321.022 kb on + strand, within ykgE at 321.027 kb on + strand, within ykgE at 321.027 kb on + strand, within ykgE at 321.035 kb on - strand, within ykgE at 321.065 kb on + strand, within ykgE at 321.073 kb on - strand, within ykgE at 321.106 kb on - strand, within ykgE at 321.202 kb on - strand, within ykgE at 321.221 kb on - strand, within ykgE at 321.221 kb on - strand, within ykgE at 321.236 kb on - strand, within ykgE at 321.236 kb on - strand, within ykgE at 321.249 kb on - strand, within ykgE at 321.266 kb on + strand, within ykgE at 321.307 kb on + strand, within ykgE at 321.321 kb on + strand, within ykgE at 321.325 kb on + strand, within ykgE at 321.325 kb on + strand, within ykgE at 321.335 kb on + strand, within ykgE at 321.436 kb on - strand, within ykgE at 321.461 kb on + strand, within ykgE at 321.461 kb on + strand, within ykgE at 321.533 kb on + strand at 321.533 kb on + strand at 321.552 kb on + strand at 321.553 kb on + strand at 321.557 kb on + strand at 321.672 kb on - strand at 321.699 kb on + strand at 321.732 kb on + strand, within ykgF at 321.732 kb on + strand, within ykgF at 321.736 kb on + strand, within ykgF at 321.750 kb on + strand, within ykgF at 321.918 kb on + strand, within ykgF at 321.960 kb on + strand, within ykgF at 321.960 kb on + strand, within ykgF at 322.013 kb on + strand, within ykgF at 322.028 kb on + strand, within ykgF at 322.028 kb on + strand, within ykgF at 322.034 kb on + strand, within ykgF at 322.075 kb on + strand, within ykgF at 322.081 kb on + strand, within ykgF at 322.154 kb on + strand, within ykgF at 322.239 kb on + strand, within ykgF at 322.477 kb on - strand, within ykgF at 322.516 kb on + strand, within ykgF at 322.516 kb on + strand, within ykgF
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 319,877 + ykgD b0305 0.50 -0.5 319,886 + ykgD b0305 0.51 -0.5 319,886 + ykgD b0305 0.51 -1.0 319,890 - ykgD b0305 0.51 -0.4 319,890 - ykgD b0305 0.51 +1.1 319,899 - ykgD b0305 0.52 -1.4 319,899 - ykgD b0305 0.52 +0.7 319,901 + ykgD b0305 0.53 -0.6 319,906 - ykgD b0305 0.53 +0.2 319,939 + ykgD b0305 0.57 +0.6 319,939 + ykgD b0305 0.57 +1.0 319,939 + ykgD b0305 0.57 +0.2 319,939 + ykgD b0305 0.57 -0.6 319,947 - ykgD b0305 0.58 +1.2 319,947 - ykgD b0305 0.58 +0.2 319,949 + ykgD b0305 0.58 +0.0 319,992 + ykgD b0305 0.63 -0.1 319,992 + ykgD b0305 0.63 -1.6 320,034 - ykgD b0305 0.68 -0.1 320,034 - ykgD b0305 0.68 +0.7 320,034 - ykgD b0305 0.68 +0.2 320,047 + ykgD b0305 0.70 -0.9 320,055 - ykgD b0305 0.71 -0.5 320,057 + ykgD b0305 0.71 -0.6 320,065 - ykgD b0305 0.72 +1.6 320,065 - ykgD b0305 0.72 -0.6 320,065 - ykgD b0305 0.72 +0.6 320,181 + ykgD b0305 0.85 +0.5 320,181 + ykgD b0305 0.85 +0.6 320,183 + ykgD b0305 0.86 +0.7 320,183 + ykgD b0305 0.86 +0.6 320,183 + ykgD b0305 0.86 -0.6 320,191 - ykgD b0305 0.87 +0.3 320,191 - ykgD b0305 0.87 -1.0 320,194 - ykgD b0305 0.87 -0.1 320,207 + ykgD b0305 0.88 +0.8 320,215 - ykgD b0305 0.89 -0.2 320,254 + -0.2 320,278 + -2.8 320,278 + -0.8 320,283 + -1.4 320,283 + +0.3 320,283 + -0.4 320,283 + +1.6 320,292 + +1.2 320,293 + -0.8 320,293 + +0.3 320,299 + -0.8 320,343 + +0.6 320,387 + +0.6 320,576 - -0.3 320,654 - -0.3 320,723 + +1.3 320,728 + +0.1 320,729 + +0.6 320,729 - -0.2 320,731 - -1.8 320,781 - -0.3 320,788 - +0.2 320,788 - -0.3 320,807 + +0.6 320,813 + +0.4 320,815 - -0.6 320,821 - +0.4 320,865 - +0.8 320,883 - -0.0 320,884 - +0.2 320,886 + -0.2 320,886 + -0.1 320,894 + +0.8 320,894 + -1.5 320,898 + -0.0 320,898 + -0.1 320,899 - -0.5 320,901 - +0.0 320,904 - ykgE b0306 0.10 -0.2 320,944 + ykgE b0306 0.16 -0.8 320,944 + ykgE b0306 0.16 -0.4 320,959 + ykgE b0306 0.18 -0.6 320,959 + ykgE b0306 0.18 +1.6 320,971 - ykgE b0306 0.19 +0.2 320,975 - ykgE b0306 0.20 -0.6 320,975 - ykgE b0306 0.20 +0.5 320,977 - ykgE b0306 0.20 +0.3 320,978 - ykgE b0306 0.20 +0.6 320,983 + ykgE b0306 0.21 -0.2 321,022 + ykgE b0306 0.26 -0.7 321,027 + ykgE b0306 0.27 +0.6 321,027 + ykgE b0306 0.27 -0.1 321,035 - ykgE b0306 0.28 +0.0 321,065 + ykgE b0306 0.32 +0.1 321,073 - ykgE b0306 0.33 -0.5 321,106 - ykgE b0306 0.38 -0.0 321,202 - ykgE b0306 0.51 -0.2 321,221 - ykgE b0306 0.54 +0.2 321,221 - ykgE b0306 0.54 -0.8 321,236 - ykgE b0306 0.56 +0.1 321,236 - ykgE b0306 0.56 +0.3 321,249 - ykgE b0306 0.58 +0.2 321,266 + ykgE b0306 0.60 +0.1 321,307 + ykgE b0306 0.66 +1.0 321,321 + ykgE b0306 0.68 -0.6 321,325 + ykgE b0306 0.68 +0.2 321,325 + ykgE b0306 0.68 +1.0 321,335 + ykgE b0306 0.70 +0.8 321,436 - ykgE b0306 0.84 -0.4 321,461 + ykgE b0306 0.87 +2.5 321,461 + ykgE b0306 0.87 +0.7 321,533 + +1.0 321,533 + +0.2 321,552 + +0.1 321,553 + +0.5 321,557 + +0.5 321,672 - +1.0 321,699 + +0.6 321,732 + ykgF b0307 0.12 -0.3 321,732 + ykgF b0307 0.12 -0.1 321,736 + ykgF b0307 0.12 +0.4 321,750 + ykgF b0307 0.13 -0.2 321,918 + ykgF b0307 0.25 +0.3 321,960 + ykgF b0307 0.28 +1.3 321,960 + ykgF b0307 0.28 +1.3 322,013 + ykgF b0307 0.32 +0.2 322,028 + ykgF b0307 0.33 -0.6 322,028 + ykgF b0307 0.33 +0.4 322,034 + ykgF b0307 0.33 +0.4 322,075 + ykgF b0307 0.36 +0.9 322,081 + ykgF b0307 0.36 -0.7 322,154 + ykgF b0307 0.41 -0.3 322,239 + ykgF b0307 0.47 -0.2 322,477 - ykgF b0307 0.64 -1.2 322,516 + ykgF b0307 0.67 -0.3 322,516 + ykgF b0307 0.67 -0.7
Or see this region's nucleotide sequence