Strain Fitness in Serratia liquefaciens MT49 around IAI46_24725

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_24720 and IAI46_24725 are separated by 32 nucleotidesIAI46_24725 and IAI46_24730 are separated by 9 nucleotides IAI46_24720: IAI46_24720 - divergent polysaccharide deacetylase family protein, at 5,276,208 to 5,277,173 _24720 IAI46_24725: IAI46_24725 - L-threonine 3-dehydrogenase, at 5,277,206 to 5,278,231 _24725 IAI46_24730: IAI46_24730 - glycine C-acetyltransferase, at 5,278,241 to 5,279,437 _24730 Position (kb) 5277 5278 5279Strain fitness (log2 ratio) -1 0 1 2at 5276.215 kb on - strandat 5276.217 kb on - strandat 5276.431 kb on + strand, within IAI46_24720at 5276.432 kb on - strand, within IAI46_24720at 5276.432 kb on - strand, within IAI46_24720at 5276.441 kb on + strand, within IAI46_24720at 5276.441 kb on + strand, within IAI46_24720at 5276.442 kb on - strand, within IAI46_24720at 5276.462 kb on + strand, within IAI46_24720at 5276.462 kb on + strand, within IAI46_24720at 5276.463 kb on - strand, within IAI46_24720at 5276.488 kb on + strand, within IAI46_24720at 5276.488 kb on + strand, within IAI46_24720at 5276.543 kb on + strand, within IAI46_24720at 5276.543 kb on + strand, within IAI46_24720at 5276.543 kb on + strand, within IAI46_24720at 5276.544 kb on - strand, within IAI46_24720at 5276.544 kb on - strand, within IAI46_24720at 5276.548 kb on + strand, within IAI46_24720at 5276.548 kb on + strand, within IAI46_24720at 5276.548 kb on + strand, within IAI46_24720at 5276.548 kb on + strand, within IAI46_24720at 5276.548 kb on + strand, within IAI46_24720at 5276.549 kb on - strand, within IAI46_24720at 5276.553 kb on + strand, within IAI46_24720at 5276.554 kb on - strand, within IAI46_24720at 5276.560 kb on + strand, within IAI46_24720at 5276.560 kb on + strand, within IAI46_24720at 5276.561 kb on - strand, within IAI46_24720at 5276.561 kb on - strand, within IAI46_24720at 5276.561 kb on - strand, within IAI46_24720at 5276.564 kb on + strand, within IAI46_24720at 5276.564 kb on + strand, within IAI46_24720at 5276.564 kb on + strand, within IAI46_24720at 5276.565 kb on - strand, within IAI46_24720at 5276.565 kb on - strand, within IAI46_24720at 5276.565 kb on - strand, within IAI46_24720at 5276.565 kb on - strand, within IAI46_24720at 5276.641 kb on - strand, within IAI46_24720at 5276.649 kb on + strand, within IAI46_24720at 5276.649 kb on + strand, within IAI46_24720at 5276.649 kb on + strand, within IAI46_24720at 5276.650 kb on - strand, within IAI46_24720at 5276.729 kb on + strand, within IAI46_24720at 5276.729 kb on + strand, within IAI46_24720at 5276.729 kb on + strand, within IAI46_24720at 5276.729 kb on + strand, within IAI46_24720at 5276.729 kb on + strand, within IAI46_24720at 5276.729 kb on + strand, within IAI46_24720at 5276.730 kb on - strand, within IAI46_24720at 5276.730 kb on - strand, within IAI46_24720at 5276.730 kb on - strand, within IAI46_24720at 5276.730 kb on - strand, within IAI46_24720at 5276.748 kb on - strand, within IAI46_24720at 5276.820 kb on - strand, within IAI46_24720at 5276.876 kb on + strand, within IAI46_24720at 5276.955 kb on + strand, within IAI46_24720at 5276.955 kb on + strand, within IAI46_24720at 5276.955 kb on + strand, within IAI46_24720at 5276.955 kb on + strand, within IAI46_24720at 5276.956 kb on - strand, within IAI46_24720at 5276.956 kb on - strand, within IAI46_24720at 5277.026 kb on + strand, within IAI46_24720at 5277.026 kb on + strand, within IAI46_24720at 5277.026 kb on + strand, within IAI46_24720at 5277.026 kb on + strand, within IAI46_24720at 5277.027 kb on - strand, within IAI46_24720at 5277.027 kb on - strand, within IAI46_24720at 5277.027 kb on - strand, within IAI46_24720at 5277.027 kb on - strand, within IAI46_24720at 5277.027 kb on - strand, within IAI46_24720at 5277.027 kb on - strand, within IAI46_24720at 5277.119 kb on + strandat 5277.119 kb on + strandat 5277.120 kb on - strandat 5277.165 kb on - strandat 5277.171 kb on + strandat 5277.171 kb on + strandat 5277.207 kb on + strandat 5277.208 kb on - strandat 5277.208 kb on - strandat 5277.208 kb on - strandat 5277.295 kb on + strandat 5277.295 kb on + strandat 5277.295 kb on + strandat 5277.296 kb on - strandat 5277.301 kb on + strandat 5277.302 kb on - strandat 5277.343 kb on + strand, within IAI46_24725at 5277.343 kb on + strand, within IAI46_24725at 5277.343 kb on + strand, within IAI46_24725at 5277.344 kb on - strand, within IAI46_24725at 5277.344 kb on - strand, within IAI46_24725at 5277.344 kb on - strand, within IAI46_24725at 5277.344 kb on - strand, within IAI46_24725at 5277.345 kb on + strand, within IAI46_24725at 5277.345 kb on + strand, within IAI46_24725at 5277.372 kb on + strand, within IAI46_24725at 5277.427 kb on + strand, within IAI46_24725at 5277.428 kb on - strand, within IAI46_24725at 5277.428 kb on - strand, within IAI46_24725at 5277.458 kb on - strand, within IAI46_24725at 5277.458 kb on - strand, within IAI46_24725at 5277.653 kb on - strand, within IAI46_24725at 5277.682 kb on + strand, within IAI46_24725at 5277.682 kb on + strand, within IAI46_24725at 5277.682 kb on + strand, within IAI46_24725at 5277.682 kb on + strand, within IAI46_24725at 5277.682 kb on + strand, within IAI46_24725at 5277.682 kb on + strand, within IAI46_24725at 5277.682 kb on + strand, within IAI46_24725at 5277.682 kb on + strand, within IAI46_24725at 5277.682 kb on + strand, within IAI46_24725at 5277.682 kb on + strand, within IAI46_24725at 5277.682 kb on + strand, within IAI46_24725at 5277.682 kb on + strand, within IAI46_24725at 5277.682 kb on + strand, within IAI46_24725at 5277.682 kb on + strand, within IAI46_24725at 5277.682 kb on + strand, within IAI46_24725at 5277.683 kb on - strand, within IAI46_24725at 5277.683 kb on - strand, within IAI46_24725at 5277.683 kb on - strand, within IAI46_24725at 5277.683 kb on - strand, within IAI46_24725at 5277.683 kb on - strand, within IAI46_24725at 5277.683 kb on - strand, within IAI46_24725at 5277.683 kb on - strand, within IAI46_24725at 5277.683 kb on - strand, within IAI46_24725at 5277.683 kb on - strand, within IAI46_24725at 5277.683 kb on - strand, within IAI46_24725at 5277.687 kb on - strand, within IAI46_24725at 5277.817 kb on + strand, within IAI46_24725at 5277.817 kb on + strand, within IAI46_24725at 5277.818 kb on - strand, within IAI46_24725at 5277.861 kb on + strand, within IAI46_24725at 5277.862 kb on - strand, within IAI46_24725at 5277.862 kb on - strand, within IAI46_24725at 5277.961 kb on + strand, within IAI46_24725at 5278.038 kb on + strand, within IAI46_24725at 5278.039 kb on - strand, within IAI46_24725at 5278.057 kb on + strand, within IAI46_24725at 5278.057 kb on + strand, within IAI46_24725at 5278.097 kb on - strand, within IAI46_24725at 5278.098 kb on + strand, within IAI46_24725at 5278.098 kb on + strand, within IAI46_24725at 5278.098 kb on + strand, within IAI46_24725at 5278.098 kb on + strand, within IAI46_24725at 5278.098 kb on + strand, within IAI46_24725at 5278.099 kb on - strand, within IAI46_24725at 5278.099 kb on - strand, within IAI46_24725at 5278.099 kb on - strand, within IAI46_24725at 5278.099 kb on - strand, within IAI46_24725at 5278.099 kb on - strand, within IAI46_24725at 5278.099 kb on - strand, within IAI46_24725at 5278.099 kb on - strand, within IAI46_24725at 5278.102 kb on + strand, within IAI46_24725at 5278.102 kb on + strand, within IAI46_24725at 5278.102 kb on + strand, within IAI46_24725at 5278.102 kb on + strand, within IAI46_24725at 5278.103 kb on - strand, within IAI46_24725at 5278.103 kb on - strand, within IAI46_24725at 5278.142 kb on - strandat 5278.238 kb on - strandat 5278.243 kb on - strandat 5278.243 kb on - strandat 5278.312 kb on + strandat 5278.313 kb on - strandat 5278.334 kb on - strandat 5278.334 kb on - strandat 5278.368 kb on + strand, within IAI46_24730at 5278.386 kb on + strand, within IAI46_24730at 5278.386 kb on + strand, within IAI46_24730at 5278.386 kb on + strand, within IAI46_24730at 5278.386 kb on + strand, within IAI46_24730at 5278.386 kb on + strand, within IAI46_24730at 5278.386 kb on + strand, within IAI46_24730at 5278.386 kb on + strand, within IAI46_24730at 5278.386 kb on + strand, within IAI46_24730at 5278.386 kb on + strand, within IAI46_24730at 5278.386 kb on + strand, within IAI46_24730at 5278.386 kb on + strand, within IAI46_24730at 5278.387 kb on - strand, within IAI46_24730at 5278.387 kb on - strand, within IAI46_24730at 5278.387 kb on - strand, within IAI46_24730at 5278.387 kb on - strand, within IAI46_24730at 5278.387 kb on - strand, within IAI46_24730at 5278.387 kb on - strand, within IAI46_24730at 5278.387 kb on - strand, within IAI46_24730at 5278.387 kb on - strand, within IAI46_24730at 5278.575 kb on - strand, within IAI46_24730at 5278.626 kb on + strand, within IAI46_24730at 5278.627 kb on - strand, within IAI46_24730at 5278.627 kb on - strand, within IAI46_24730at 5278.627 kb on - strand, within IAI46_24730at 5278.679 kb on - strand, within IAI46_24730at 5278.681 kb on - strand, within IAI46_24730at 5278.718 kb on - strand, within IAI46_24730at 5278.755 kb on + strand, within IAI46_24730at 5278.755 kb on + strand, within IAI46_24730at 5278.830 kb on + strand, within IAI46_24730at 5278.830 kb on + strand, within IAI46_24730at 5278.831 kb on - strand, within IAI46_24730at 5278.966 kb on + strand, within IAI46_24730at 5278.967 kb on - strand, within IAI46_24730at 5278.980 kb on + strand, within IAI46_24730at 5279.050 kb on + strand, within IAI46_24730at 5279.051 kb on - strand, within IAI46_24730at 5279.116 kb on - strand, within IAI46_24730at 5279.170 kb on + strand, within IAI46_24730at 5279.170 kb on + strand, within IAI46_24730at 5279.170 kb on + strand, within IAI46_24730at 5279.171 kb on - strand, within IAI46_24730at 5279.171 kb on - strand, within IAI46_24730at 5279.194 kb on + strand, within IAI46_24730

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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5,276,215 - +0.5
5,276,217 - +1.1
5,276,431 + IAI46_24720 0.23 -0.2
5,276,432 - IAI46_24720 0.23 -0.4
5,276,432 - IAI46_24720 0.23 -0.3
5,276,441 + IAI46_24720 0.24 -1.0
5,276,441 + IAI46_24720 0.24 +0.6
5,276,442 - IAI46_24720 0.24 +0.5
5,276,462 + IAI46_24720 0.26 +0.2
5,276,462 + IAI46_24720 0.26 +0.3
5,276,463 - IAI46_24720 0.26 -0.7
5,276,488 + IAI46_24720 0.29 -0.4
5,276,488 + IAI46_24720 0.29 -0.7
5,276,543 + IAI46_24720 0.35 -0.0
5,276,543 + IAI46_24720 0.35 -0.4
5,276,543 + IAI46_24720 0.35 +0.9
5,276,544 - IAI46_24720 0.35 +1.1
5,276,544 - IAI46_24720 0.35 +0.2
5,276,548 + IAI46_24720 0.35 +0.4
5,276,548 + IAI46_24720 0.35 +0.7
5,276,548 + IAI46_24720 0.35 +0.8
5,276,548 + IAI46_24720 0.35 -0.0
5,276,548 + IAI46_24720 0.35 -0.1
5,276,549 - IAI46_24720 0.35 -0.1
5,276,553 + IAI46_24720 0.36 +0.6
5,276,554 - IAI46_24720 0.36 +0.5
5,276,560 + IAI46_24720 0.36 -1.4
5,276,560 + IAI46_24720 0.36 -0.7
5,276,561 - IAI46_24720 0.37 -0.3
5,276,561 - IAI46_24720 0.37 +0.7
5,276,561 - IAI46_24720 0.37 -1.1
5,276,564 + IAI46_24720 0.37 +1.0
5,276,564 + IAI46_24720 0.37 +0.1
5,276,564 + IAI46_24720 0.37 +0.0
5,276,565 - IAI46_24720 0.37 -0.1
5,276,565 - IAI46_24720 0.37 +0.4
5,276,565 - IAI46_24720 0.37 +0.9
5,276,565 - IAI46_24720 0.37 -0.2
5,276,641 - IAI46_24720 0.45 +0.5
5,276,649 + IAI46_24720 0.46 -0.7
5,276,649 + IAI46_24720 0.46 +0.4
5,276,649 + IAI46_24720 0.46 +0.1
5,276,650 - IAI46_24720 0.46 -0.7
5,276,729 + IAI46_24720 0.54 +1.0
5,276,729 + IAI46_24720 0.54 +1.4
5,276,729 + IAI46_24720 0.54 -0.5
5,276,729 + IAI46_24720 0.54 +1.3
5,276,729 + IAI46_24720 0.54 +0.0
5,276,729 + IAI46_24720 0.54 -0.0
5,276,730 - IAI46_24720 0.54 +0.4
5,276,730 - IAI46_24720 0.54 -0.2
5,276,730 - IAI46_24720 0.54 -0.2
5,276,730 - IAI46_24720 0.54 +0.1
5,276,748 - IAI46_24720 0.56 +0.6
5,276,820 - IAI46_24720 0.63 +0.2
5,276,876 + IAI46_24720 0.69 +0.1
5,276,955 + IAI46_24720 0.77 -0.4
5,276,955 + IAI46_24720 0.77 -1.1
5,276,955 + IAI46_24720 0.77 +0.7
5,276,955 + IAI46_24720 0.77 -0.4
5,276,956 - IAI46_24720 0.77 +0.1
5,276,956 - IAI46_24720 0.77 +0.7
5,277,026 + IAI46_24720 0.85 -0.2
5,277,026 + IAI46_24720 0.85 +0.2
5,277,026 + IAI46_24720 0.85 +0.2
5,277,026 + IAI46_24720 0.85 +0.2
5,277,027 - IAI46_24720 0.85 +0.2
5,277,027 - IAI46_24720 0.85 -0.4
5,277,027 - IAI46_24720 0.85 -0.5
5,277,027 - IAI46_24720 0.85 +0.6
5,277,027 - IAI46_24720 0.85 +0.3
5,277,027 - IAI46_24720 0.85 -1.4
5,277,119 + +0.6
5,277,119 + +0.5
5,277,120 - -0.3
5,277,165 - -0.1
5,277,171 + -0.1
5,277,171 + +0.1
5,277,207 + +0.5
5,277,208 - +0.7
5,277,208 - -1.0
5,277,208 - -0.5
5,277,295 + +0.3
5,277,295 + +0.7
5,277,295 + +0.3
5,277,296 - +0.3
5,277,301 + +0.4
5,277,302 - -0.3
5,277,343 + IAI46_24725 0.13 -1.0
5,277,343 + IAI46_24725 0.13 +0.5
5,277,343 + IAI46_24725 0.13 +0.1
5,277,344 - IAI46_24725 0.13 +0.6
5,277,344 - IAI46_24725 0.13 +0.4
5,277,344 - IAI46_24725 0.13 +0.7
5,277,344 - IAI46_24725 0.13 +0.0
5,277,345 + IAI46_24725 0.14 -0.2
5,277,345 + IAI46_24725 0.14 +0.2
5,277,372 + IAI46_24725 0.16 +0.4
5,277,427 + IAI46_24725 0.22 -0.2
5,277,428 - IAI46_24725 0.22 +0.8
5,277,428 - IAI46_24725 0.22 +0.2
5,277,458 - IAI46_24725 0.25 +0.4
5,277,458 - IAI46_24725 0.25 -0.9
5,277,653 - IAI46_24725 0.44 +0.2
5,277,682 + IAI46_24725 0.46 +0.1
5,277,682 + IAI46_24725 0.46 +0.4
5,277,682 + IAI46_24725 0.46 -0.3
5,277,682 + IAI46_24725 0.46 +0.8
5,277,682 + IAI46_24725 0.46 +0.7
5,277,682 + IAI46_24725 0.46 -0.4
5,277,682 + IAI46_24725 0.46 +0.8
5,277,682 + IAI46_24725 0.46 -0.4
5,277,682 + IAI46_24725 0.46 +0.7
5,277,682 + IAI46_24725 0.46 -0.2
5,277,682 + IAI46_24725 0.46 +1.2
5,277,682 + IAI46_24725 0.46 +0.0
5,277,682 + IAI46_24725 0.46 -0.1
5,277,682 + IAI46_24725 0.46 -0.6
5,277,682 + IAI46_24725 0.46 +0.8
5,277,683 - IAI46_24725 0.46 +0.1
5,277,683 - IAI46_24725 0.46 -1.1
5,277,683 - IAI46_24725 0.46 +0.3
5,277,683 - IAI46_24725 0.46 +0.4
5,277,683 - IAI46_24725 0.46 +0.3
5,277,683 - IAI46_24725 0.46 -0.7
5,277,683 - IAI46_24725 0.46 +1.1
5,277,683 - IAI46_24725 0.46 +0.2
5,277,683 - IAI46_24725 0.46 -0.3
5,277,683 - IAI46_24725 0.46 +0.1
5,277,687 - IAI46_24725 0.47 +0.5
5,277,817 + IAI46_24725 0.60 +0.0
5,277,817 + IAI46_24725 0.60 -0.3
5,277,818 - IAI46_24725 0.60 -0.2
5,277,861 + IAI46_24725 0.64 -0.4
5,277,862 - IAI46_24725 0.64 +0.4
5,277,862 - IAI46_24725 0.64 -1.0
5,277,961 + IAI46_24725 0.74 +0.5
5,278,038 + IAI46_24725 0.81 +0.3
5,278,039 - IAI46_24725 0.81 +0.0
5,278,057 + IAI46_24725 0.83 -0.0
5,278,057 + IAI46_24725 0.83 +0.1
5,278,097 - IAI46_24725 0.87 +0.1
5,278,098 + IAI46_24725 0.87 +0.1
5,278,098 + IAI46_24725 0.87 +0.4
5,278,098 + IAI46_24725 0.87 -0.4
5,278,098 + IAI46_24725 0.87 +0.5
5,278,098 + IAI46_24725 0.87 -0.3
5,278,099 - IAI46_24725 0.87 -0.1
5,278,099 - IAI46_24725 0.87 +0.9
5,278,099 - IAI46_24725 0.87 +0.1
5,278,099 - IAI46_24725 0.87 -0.4
5,278,099 - IAI46_24725 0.87 -0.0
5,278,099 - IAI46_24725 0.87 +0.2
5,278,099 - IAI46_24725 0.87 -0.5
5,278,102 + IAI46_24725 0.87 +0.4
5,278,102 + IAI46_24725 0.87 +0.3
5,278,102 + IAI46_24725 0.87 +0.3
5,278,102 + IAI46_24725 0.87 +0.0
5,278,103 - IAI46_24725 0.87 +0.3
5,278,103 - IAI46_24725 0.87 -0.6
5,278,142 - -0.4
5,278,238 - +0.4
5,278,243 - +0.7
5,278,243 - +0.0
5,278,312 + -0.4
5,278,313 - +0.3
5,278,334 - +0.2
5,278,334 - +0.4
5,278,368 + IAI46_24730 0.11 -0.1
5,278,386 + IAI46_24730 0.12 +0.5
5,278,386 + IAI46_24730 0.12 +0.6
5,278,386 + IAI46_24730 0.12 +0.2
5,278,386 + IAI46_24730 0.12 +0.4
5,278,386 + IAI46_24730 0.12 -0.0
5,278,386 + IAI46_24730 0.12 -0.5
5,278,386 + IAI46_24730 0.12 -0.2
5,278,386 + IAI46_24730 0.12 -0.2
5,278,386 + IAI46_24730 0.12 -0.1
5,278,386 + IAI46_24730 0.12 +0.6
5,278,386 + IAI46_24730 0.12 -0.2
5,278,387 - IAI46_24730 0.12 +0.0
5,278,387 - IAI46_24730 0.12 +0.4
5,278,387 - IAI46_24730 0.12 -0.3
5,278,387 - IAI46_24730 0.12 +0.1
5,278,387 - IAI46_24730 0.12 +1.4
5,278,387 - IAI46_24730 0.12 +0.7
5,278,387 - IAI46_24730 0.12 -0.3
5,278,387 - IAI46_24730 0.12 +0.6
5,278,575 - IAI46_24730 0.28 -0.5
5,278,626 + IAI46_24730 0.32 -0.4
5,278,627 - IAI46_24730 0.32 +0.6
5,278,627 - IAI46_24730 0.32 +0.4
5,278,627 - IAI46_24730 0.32 +1.0
5,278,679 - IAI46_24730 0.37 +0.2
5,278,681 - IAI46_24730 0.37 -0.4
5,278,718 - IAI46_24730 0.40 +0.2
5,278,755 + IAI46_24730 0.43 +1.1
5,278,755 + IAI46_24730 0.43 +1.2
5,278,830 + IAI46_24730 0.49 +1.2
5,278,830 + IAI46_24730 0.49 +0.7
5,278,831 - IAI46_24730 0.49 +0.8
5,278,966 + IAI46_24730 0.61 +0.5
5,278,967 - IAI46_24730 0.61 +0.5
5,278,980 + IAI46_24730 0.62 +0.3
5,279,050 + IAI46_24730 0.68 -1.2
5,279,051 - IAI46_24730 0.68 -0.3
5,279,116 - IAI46_24730 0.73 +0.2
5,279,170 + IAI46_24730 0.78 +0.7
5,279,170 + IAI46_24730 0.78 -0.0
5,279,170 + IAI46_24730 0.78 -0.4
5,279,171 - IAI46_24730 0.78 +1.1
5,279,171 - IAI46_24730 0.78 +1.8
5,279,194 + IAI46_24730 0.80 +0.1

Or see this region's nucleotide sequence