Strain Fitness in Serratia liquefaciens MT49 around IAI46_24195

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_24190 and IAI46_24195 overlap by 1 nucleotidesIAI46_24195 and IAI46_24200 are separated by 52 nucleotides IAI46_24190: IAI46_24190 - FGGY-family carbohydrate kinase, at 5,155,800 to 5,157,437 _24190 IAI46_24195: IAI46_24195 - SIS domain-containing protein, at 5,157,437 to 5,158,036 _24195 IAI46_24200: IAI46_24200 - 5'-nucleotidase C-terminal domain-containing protein, at 5,158,089 to 5,159,987 _24200 Position (kb) 5157 5158 5159Strain fitness (log2 ratio) -1 0 1at 5156.654 kb on + strand, within IAI46_24190at 5156.669 kb on + strand, within IAI46_24190at 5156.696 kb on + strand, within IAI46_24190at 5156.708 kb on - strand, within IAI46_24190at 5156.718 kb on + strand, within IAI46_24190at 5156.718 kb on + strand, within IAI46_24190at 5156.719 kb on - strand, within IAI46_24190at 5156.719 kb on - strand, within IAI46_24190at 5156.719 kb on - strand, within IAI46_24190at 5156.721 kb on + strand, within IAI46_24190at 5156.722 kb on - strand, within IAI46_24190at 5156.859 kb on + strand, within IAI46_24190at 5156.860 kb on - strand, within IAI46_24190at 5156.860 kb on - strand, within IAI46_24190at 5156.930 kb on + strand, within IAI46_24190at 5156.930 kb on + strand, within IAI46_24190at 5156.936 kb on + strand, within IAI46_24190at 5156.936 kb on + strand, within IAI46_24190at 5156.936 kb on + strand, within IAI46_24190at 5156.936 kb on + strand, within IAI46_24190at 5156.937 kb on - strand, within IAI46_24190at 5156.937 kb on - strand, within IAI46_24190at 5157.032 kb on + strand, within IAI46_24190at 5157.046 kb on - strand, within IAI46_24190at 5157.086 kb on + strand, within IAI46_24190at 5157.087 kb on - strand, within IAI46_24190at 5157.089 kb on + strand, within IAI46_24190at 5157.115 kb on - strand, within IAI46_24190at 5157.273 kb on + strand, within IAI46_24190at 5157.358 kb on - strandat 5157.365 kb on + strandat 5157.365 kb on + strandat 5157.390 kb on + strandat 5157.391 kb on - strandat 5157.391 kb on - strandat 5157.391 kb on - strandat 5157.393 kb on - strandat 5157.479 kb on + strandat 5157.480 kb on - strandat 5157.480 kb on - strandat 5157.480 kb on - strandat 5157.615 kb on + strand, within IAI46_24195at 5157.615 kb on + strand, within IAI46_24195at 5157.616 kb on - strand, within IAI46_24195at 5157.616 kb on - strand, within IAI46_24195at 5157.622 kb on + strand, within IAI46_24195at 5157.622 kb on + strand, within IAI46_24195at 5157.622 kb on + strand, within IAI46_24195at 5157.623 kb on - strand, within IAI46_24195at 5157.623 kb on - strand, within IAI46_24195at 5157.623 kb on - strand, within IAI46_24195at 5157.623 kb on - strand, within IAI46_24195at 5157.653 kb on + strand, within IAI46_24195at 5157.654 kb on - strand, within IAI46_24195at 5157.874 kb on - strand, within IAI46_24195at 5157.887 kb on - strand, within IAI46_24195at 5157.887 kb on - strand, within IAI46_24195at 5157.971 kb on - strand, within IAI46_24195at 5158.035 kb on - strandat 5158.035 kb on - strandat 5158.052 kb on - strandat 5158.063 kb on + strandat 5158.063 kb on + strandat 5158.063 kb on + strandat 5158.063 kb on + strandat 5158.063 kb on + strandat 5158.064 kb on - strandat 5158.064 kb on - strandat 5158.064 kb on - strandat 5158.067 kb on + strandat 5158.067 kb on + strandat 5158.081 kb on + strandat 5158.081 kb on + strandat 5158.081 kb on + strandat 5158.081 kb on + strandat 5158.081 kb on + strandat 5158.082 kb on - strandat 5158.082 kb on - strandat 5158.082 kb on - strandat 5158.082 kb on - strandat 5158.082 kb on - strandat 5158.100 kb on + strandat 5158.278 kb on - strandat 5158.322 kb on + strand, within IAI46_24200at 5158.385 kb on - strand, within IAI46_24200at 5158.453 kb on + strand, within IAI46_24200at 5158.529 kb on + strand, within IAI46_24200at 5158.534 kb on + strand, within IAI46_24200at 5158.534 kb on + strand, within IAI46_24200at 5158.641 kb on - strand, within IAI46_24200at 5158.642 kb on + strand, within IAI46_24200at 5158.676 kb on - strand, within IAI46_24200at 5158.708 kb on + strand, within IAI46_24200at 5158.709 kb on - strand, within IAI46_24200at 5158.762 kb on + strand, within IAI46_24200at 5158.763 kb on - strand, within IAI46_24200at 5158.792 kb on + strand, within IAI46_24200at 5158.792 kb on + strand, within IAI46_24200at 5158.816 kb on + strand, within IAI46_24200at 5158.822 kb on + strand, within IAI46_24200at 5158.823 kb on - strand, within IAI46_24200at 5158.835 kb on + strand, within IAI46_24200at 5158.836 kb on - strand, within IAI46_24200at 5158.863 kb on + strand, within IAI46_24200at 5158.864 kb on - strand, within IAI46_24200at 5158.880 kb on + strand, within IAI46_24200at 5158.881 kb on - strand, within IAI46_24200at 5158.881 kb on - strand, within IAI46_24200at 5158.918 kb on + strand, within IAI46_24200at 5158.918 kb on + strand, within IAI46_24200at 5158.918 kb on + strand, within IAI46_24200at 5158.919 kb on - strand, within IAI46_24200at 5158.919 kb on - strand, within IAI46_24200at 5158.921 kb on + strand, within IAI46_24200at 5158.922 kb on - strand, within IAI46_24200at 5158.922 kb on - strand, within IAI46_24200at 5158.939 kb on + strand, within IAI46_24200at 5158.940 kb on - strand, within IAI46_24200at 5158.972 kb on - strand, within IAI46_24200

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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5,156,654 + IAI46_24190 0.52 -0.5
5,156,669 + IAI46_24190 0.53 +0.6
5,156,696 + IAI46_24190 0.55 +0.3
5,156,708 - IAI46_24190 0.55 +0.4
5,156,718 + IAI46_24190 0.56 +0.4
5,156,718 + IAI46_24190 0.56 +0.3
5,156,719 - IAI46_24190 0.56 -0.7
5,156,719 - IAI46_24190 0.56 +0.2
5,156,719 - IAI46_24190 0.56 +0.1
5,156,721 + IAI46_24190 0.56 +0.7
5,156,722 - IAI46_24190 0.56 -0.1
5,156,859 + IAI46_24190 0.65 +0.4
5,156,860 - IAI46_24190 0.65 +0.6
5,156,860 - IAI46_24190 0.65 +0.3
5,156,930 + IAI46_24190 0.69 +0.8
5,156,930 + IAI46_24190 0.69 -0.6
5,156,936 + IAI46_24190 0.69 +0.5
5,156,936 + IAI46_24190 0.69 +0.4
5,156,936 + IAI46_24190 0.69 -0.3
5,156,936 + IAI46_24190 0.69 +0.6
5,156,937 - IAI46_24190 0.69 -0.1
5,156,937 - IAI46_24190 0.69 -0.1
5,157,032 + IAI46_24190 0.75 +0.6
5,157,046 - IAI46_24190 0.76 +1.4
5,157,086 + IAI46_24190 0.79 +1.0
5,157,087 - IAI46_24190 0.79 +0.4
5,157,089 + IAI46_24190 0.79 +0.6
5,157,115 - IAI46_24190 0.80 +0.2
5,157,273 + IAI46_24190 0.90 +1.4
5,157,358 - -0.3
5,157,365 + +0.9
5,157,365 + +0.1
5,157,390 + -0.0
5,157,391 - -0.1
5,157,391 - +0.6
5,157,391 - +0.0
5,157,393 - +0.3
5,157,479 + -0.1
5,157,480 - -0.2
5,157,480 - +0.7
5,157,480 - +0.7
5,157,615 + IAI46_24195 0.30 -0.5
5,157,615 + IAI46_24195 0.30 -0.2
5,157,616 - IAI46_24195 0.30 +0.0
5,157,616 - IAI46_24195 0.30 +0.5
5,157,622 + IAI46_24195 0.31 -0.1
5,157,622 + IAI46_24195 0.31 +0.2
5,157,622 + IAI46_24195 0.31 +0.1
5,157,623 - IAI46_24195 0.31 -0.2
5,157,623 - IAI46_24195 0.31 +0.7
5,157,623 - IAI46_24195 0.31 +0.2
5,157,623 - IAI46_24195 0.31 -0.7
5,157,653 + IAI46_24195 0.36 +0.1
5,157,654 - IAI46_24195 0.36 +0.3
5,157,874 - IAI46_24195 0.73 +0.6
5,157,887 - IAI46_24195 0.75 -0.2
5,157,887 - IAI46_24195 0.75 -0.8
5,157,971 - IAI46_24195 0.89 +0.6
5,158,035 - -0.1
5,158,035 - -0.5
5,158,052 - +0.5
5,158,063 + +0.1
5,158,063 + +0.7
5,158,063 + +0.2
5,158,063 + -0.1
5,158,063 + +0.9
5,158,064 - +0.1
5,158,064 - +0.5
5,158,064 - +0.3
5,158,067 + +0.2
5,158,067 + -0.3
5,158,081 + +0.4
5,158,081 + +0.1
5,158,081 + +1.1
5,158,081 + +0.3
5,158,081 + +0.1
5,158,082 - -0.1
5,158,082 - +0.2
5,158,082 - -0.4
5,158,082 - +0.9
5,158,082 - +1.0
5,158,100 + +0.1
5,158,278 - +1.5
5,158,322 + IAI46_24200 0.12 +0.9
5,158,385 - IAI46_24200 0.16 +0.6
5,158,453 + IAI46_24200 0.19 -0.3
5,158,529 + IAI46_24200 0.23 -0.0
5,158,534 + IAI46_24200 0.23 +0.4
5,158,534 + IAI46_24200 0.23 +0.2
5,158,641 - IAI46_24200 0.29 -0.7
5,158,642 + IAI46_24200 0.29 +1.5
5,158,676 - IAI46_24200 0.31 +1.4
5,158,708 + IAI46_24200 0.33 -0.4
5,158,709 - IAI46_24200 0.33 -0.2
5,158,762 + IAI46_24200 0.35 +1.2
5,158,763 - IAI46_24200 0.35 -0.5
5,158,792 + IAI46_24200 0.37 +1.0
5,158,792 + IAI46_24200 0.37 -0.3
5,158,816 + IAI46_24200 0.38 -1.4
5,158,822 + IAI46_24200 0.39 +0.4
5,158,823 - IAI46_24200 0.39 +0.5
5,158,835 + IAI46_24200 0.39 -0.6
5,158,836 - IAI46_24200 0.39 +0.3
5,158,863 + IAI46_24200 0.41 -0.5
5,158,864 - IAI46_24200 0.41 -0.1
5,158,880 + IAI46_24200 0.42 +0.5
5,158,881 - IAI46_24200 0.42 +0.3
5,158,881 - IAI46_24200 0.42 +0.3
5,158,918 + IAI46_24200 0.44 -0.0
5,158,918 + IAI46_24200 0.44 -0.2
5,158,918 + IAI46_24200 0.44 -0.1
5,158,919 - IAI46_24200 0.44 -0.3
5,158,919 - IAI46_24200 0.44 +0.3
5,158,921 + IAI46_24200 0.44 +0.4
5,158,922 - IAI46_24200 0.44 +0.7
5,158,922 - IAI46_24200 0.44 +0.0
5,158,939 + IAI46_24200 0.45 -1.6
5,158,940 - IAI46_24200 0.45 +0.0
5,158,972 - IAI46_24200 0.46 -0.2

Or see this region's nucleotide sequence