Strain Fitness in Serratia liquefaciens MT49 around IAI46_24150

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_24145 and IAI46_24150 are separated by 301 nucleotidesIAI46_24150 and IAI46_24155 are separated by 75 nucleotides IAI46_24145: IAI46_24145 - NAD(P)/FAD-dependent oxidoreductase, at 5,144,899 to 5,146,098 _24145 IAI46_24150: IAI46_24150 - inorganic phosphate transporter PitA, at 5,146,400 to 5,147,902 _24150 IAI46_24155: IAI46_24155 - universal stress protein UspB, at 5,147,978 to 5,148,313 _24155 Position (kb) 5146 5147 5148Strain fitness (log2 ratio) -2 -1 0 1 2at 5145.415 kb on + strand, within IAI46_24145at 5145.415 kb on + strand, within IAI46_24145at 5145.416 kb on - strand, within IAI46_24145at 5145.507 kb on + strand, within IAI46_24145at 5145.508 kb on - strand, within IAI46_24145at 5145.516 kb on + strand, within IAI46_24145at 5145.548 kb on - strand, within IAI46_24145at 5145.576 kb on + strand, within IAI46_24145at 5145.577 kb on - strand, within IAI46_24145at 5145.577 kb on - strand, within IAI46_24145at 5145.579 kb on - strand, within IAI46_24145at 5145.869 kb on + strand, within IAI46_24145at 5145.914 kb on + strand, within IAI46_24145at 5145.915 kb on - strand, within IAI46_24145at 5145.932 kb on + strand, within IAI46_24145at 5145.932 kb on + strand, within IAI46_24145at 5145.932 kb on + strand, within IAI46_24145at 5145.933 kb on - strand, within IAI46_24145at 5145.933 kb on - strand, within IAI46_24145at 5146.072 kb on + strandat 5146.073 kb on - strandat 5146.073 kb on - strandat 5146.073 kb on - strandat 5146.075 kb on + strandat 5146.076 kb on - strandat 5146.195 kb on + strandat 5146.221 kb on - strandat 5146.224 kb on - strandat 5146.392 kb on + strandat 5146.620 kb on - strand, within IAI46_24150at 5146.737 kb on - strand, within IAI46_24150at 5146.783 kb on + strand, within IAI46_24150at 5146.862 kb on - strand, within IAI46_24150at 5146.966 kb on + strand, within IAI46_24150at 5147.309 kb on - strand, within IAI46_24150at 5147.543 kb on + strand, within IAI46_24150at 5147.891 kb on - strandat 5147.900 kb on + strandat 5147.900 kb on + strandat 5147.900 kb on + strandat 5147.900 kb on + strandat 5147.900 kb on + strandat 5147.901 kb on - strandat 5147.983 kb on - strandat 5148.043 kb on + strand, within IAI46_24155at 5148.103 kb on - strand, within IAI46_24155at 5148.118 kb on + strand, within IAI46_24155at 5148.118 kb on + strand, within IAI46_24155at 5148.118 kb on + strand, within IAI46_24155at 5148.118 kb on + strand, within IAI46_24155at 5148.118 kb on + strand, within IAI46_24155at 5148.119 kb on - strand, within IAI46_24155at 5148.120 kb on + strand, within IAI46_24155at 5148.120 kb on + strand, within IAI46_24155at 5148.134 kb on + strand, within IAI46_24155at 5148.134 kb on + strand, within IAI46_24155at 5148.135 kb on - strand, within IAI46_24155at 5148.186 kb on + strand, within IAI46_24155at 5148.186 kb on + strand, within IAI46_24155at 5148.187 kb on - strand, within IAI46_24155at 5148.187 kb on - strand, within IAI46_24155at 5148.187 kb on - strand, within IAI46_24155at 5148.187 kb on - strand, within IAI46_24155at 5148.187 kb on - strand, within IAI46_24155at 5148.192 kb on + strand, within IAI46_24155at 5148.192 kb on + strand, within IAI46_24155at 5148.193 kb on - strand, within IAI46_24155at 5148.227 kb on + strand, within IAI46_24155at 5148.227 kb on + strand, within IAI46_24155at 5148.246 kb on + strand, within IAI46_24155at 5148.247 kb on - strand, within IAI46_24155at 5148.247 kb on - strand, within IAI46_24155at 5148.247 kb on - strand, within IAI46_24155at 5148.250 kb on - strand, within IAI46_24155at 5148.374 kb on + strandat 5148.374 kb on + strandat 5148.384 kb on + strandat 5148.385 kb on - strandat 5148.385 kb on - strandat 5148.398 kb on - strandat 5148.493 kb on + strandat 5148.510 kb on - strandat 5148.516 kb on + strandat 5148.516 kb on + strandat 5148.516 kb on + strandat 5148.516 kb on + strandat 5148.517 kb on - strandat 5148.517 kb on - strandat 5148.517 kb on - strandat 5148.517 kb on - strandat 5148.517 kb on - strandat 5148.517 kb on - strandat 5148.517 kb on - strandat 5148.517 kb on - strandat 5148.518 kb on + strandat 5148.518 kb on + strandat 5148.519 kb on - strandat 5148.519 kb on - strandat 5148.525 kb on + strandat 5148.526 kb on - strandat 5148.526 kb on - strandat 5148.562 kb on + strandat 5148.567 kb on - strandat 5148.602 kb on + strandat 5148.602 kb on + strandat 5148.602 kb on + strandat 5148.603 kb on - strandat 5148.609 kb on + strandat 5148.611 kb on + strandat 5148.611 kb on + strandat 5148.612 kb on - strandat 5148.612 kb on - strandat 5148.619 kb on - strandat 5148.676 kb on - strandat 5148.676 kb on - strandat 5148.677 kb on + strandat 5148.678 kb on - strandat 5148.678 kb on - strandat 5148.678 kb on - strandat 5148.687 kb on - strandat 5148.696 kb on + strandat 5148.698 kb on + strandat 5148.823 kb on + strandat 5148.878 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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5,145,415 + IAI46_24145 0.43 +1.0
5,145,415 + IAI46_24145 0.43 +1.1
5,145,416 - IAI46_24145 0.43 +0.4
5,145,507 + IAI46_24145 0.51 +0.1
5,145,508 - IAI46_24145 0.51 -1.7
5,145,516 + IAI46_24145 0.51 +0.3
5,145,548 - IAI46_24145 0.54 +0.0
5,145,576 + IAI46_24145 0.56 -0.3
5,145,577 - IAI46_24145 0.56 -0.4
5,145,577 - IAI46_24145 0.56 -0.9
5,145,579 - IAI46_24145 0.57 +0.9
5,145,869 + IAI46_24145 0.81 +0.0
5,145,914 + IAI46_24145 0.85 -1.0
5,145,915 - IAI46_24145 0.85 +0.0
5,145,932 + IAI46_24145 0.86 +0.6
5,145,932 + IAI46_24145 0.86 -0.1
5,145,932 + IAI46_24145 0.86 +0.1
5,145,933 - IAI46_24145 0.86 +0.0
5,145,933 - IAI46_24145 0.86 -0.3
5,146,072 + -0.2
5,146,073 - +0.4
5,146,073 - -0.2
5,146,073 - +0.4
5,146,075 + +0.6
5,146,076 - -0.9
5,146,195 + -0.5
5,146,221 - +1.9
5,146,224 - +0.3
5,146,392 + +0.4
5,146,620 - IAI46_24150 0.15 +0.5
5,146,737 - IAI46_24150 0.22 +0.1
5,146,783 + IAI46_24150 0.25 -0.3
5,146,862 - IAI46_24150 0.31 +1.4
5,146,966 + IAI46_24150 0.38 +0.4
5,147,309 - IAI46_24150 0.60 +1.9
5,147,543 + IAI46_24150 0.76 +0.7
5,147,891 - +2.0
5,147,900 + -0.6
5,147,900 + -0.2
5,147,900 + -0.2
5,147,900 + +1.7
5,147,900 + +1.0
5,147,901 - -0.2
5,147,983 - +1.6
5,148,043 + IAI46_24155 0.19 +1.7
5,148,103 - IAI46_24155 0.37 +0.7
5,148,118 + IAI46_24155 0.42 -0.2
5,148,118 + IAI46_24155 0.42 +0.1
5,148,118 + IAI46_24155 0.42 -1.9
5,148,118 + IAI46_24155 0.42 -1.7
5,148,118 + IAI46_24155 0.42 +0.1
5,148,119 - IAI46_24155 0.42 +0.5
5,148,120 + IAI46_24155 0.42 -0.3
5,148,120 + IAI46_24155 0.42 +0.7
5,148,134 + IAI46_24155 0.46 -1.5
5,148,134 + IAI46_24155 0.46 +0.6
5,148,135 - IAI46_24155 0.47 -0.5
5,148,186 + IAI46_24155 0.62 -0.4
5,148,186 + IAI46_24155 0.62 -0.2
5,148,187 - IAI46_24155 0.62 +0.1
5,148,187 - IAI46_24155 0.62 -0.3
5,148,187 - IAI46_24155 0.62 -0.9
5,148,187 - IAI46_24155 0.62 +1.2
5,148,187 - IAI46_24155 0.62 +0.0
5,148,192 + IAI46_24155 0.64 -0.4
5,148,192 + IAI46_24155 0.64 -1.8
5,148,193 - IAI46_24155 0.64 -0.1
5,148,227 + IAI46_24155 0.74 -1.1
5,148,227 + IAI46_24155 0.74 -0.4
5,148,246 + IAI46_24155 0.80 +0.6
5,148,247 - IAI46_24155 0.80 +0.1
5,148,247 - IAI46_24155 0.80 -0.2
5,148,247 - IAI46_24155 0.80 +1.7
5,148,250 - IAI46_24155 0.81 -1.2
5,148,374 + -0.2
5,148,374 + -0.3
5,148,384 + +0.3
5,148,385 - -0.9
5,148,385 - +0.5
5,148,398 - -0.1
5,148,493 + -0.4
5,148,510 - +0.1
5,148,516 + +0.2
5,148,516 + -0.1
5,148,516 + +0.7
5,148,516 + +0.2
5,148,517 - +0.6
5,148,517 - -0.1
5,148,517 - +1.2
5,148,517 - +0.1
5,148,517 - +0.5
5,148,517 - +0.0
5,148,517 - +0.1
5,148,517 - +0.1
5,148,518 + +0.5
5,148,518 + -0.7
5,148,519 - +0.5
5,148,519 - -1.9
5,148,525 + -0.4
5,148,526 - +0.3
5,148,526 - +0.1
5,148,562 + +1.0
5,148,567 - -0.0
5,148,602 + -0.2
5,148,602 + +0.6
5,148,602 + -0.2
5,148,603 - -0.0
5,148,609 + -0.9
5,148,611 + +0.3
5,148,611 + -1.7
5,148,612 - +0.8
5,148,612 - -0.6
5,148,619 - +0.4
5,148,676 - -0.7
5,148,676 - +0.4
5,148,677 + +0.0
5,148,678 - +0.1
5,148,678 - -0.4
5,148,678 - +0.7
5,148,687 - +0.3
5,148,696 + +2.7
5,148,698 + +0.4
5,148,823 + +0.7
5,148,878 + +0.3

Or see this region's nucleotide sequence