Strain Fitness in Serratia liquefaciens MT49 around IAI46_22690

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_22685 and IAI46_22690 are separated by 7 nucleotidesIAI46_22690 and IAI46_22695 overlap by 4 nucleotides IAI46_22685: IAI46_22685 - metalloprotease TldD, at 4,826,905 to 4,828,350 _22685 IAI46_22690: IAI46_22690 - carbon-nitrogen hydrolase family protein, at 4,828,358 to 4,829,218 _22690 IAI46_22695: IAI46_22695 - AsmA2 domain-containing protein YhdP, at 4,829,215 to 4,833,030 _22695 Position (kb) 4828 4829 4830Strain fitness (log2 ratio) -2 -1 0 1 2at 4827.389 kb on + strand, within IAI46_22685at 4827.390 kb on + strand, within IAI46_22685at 4827.390 kb on + strand, within IAI46_22685at 4827.392 kb on + strand, within IAI46_22685at 4827.392 kb on + strand, within IAI46_22685at 4827.392 kb on + strand, within IAI46_22685at 4827.393 kb on - strand, within IAI46_22685at 4827.450 kb on + strand, within IAI46_22685at 4827.464 kb on - strand, within IAI46_22685at 4827.574 kb on + strand, within IAI46_22685at 4827.575 kb on - strand, within IAI46_22685at 4827.674 kb on + strand, within IAI46_22685at 4827.675 kb on - strand, within IAI46_22685at 4827.722 kb on + strand, within IAI46_22685at 4827.863 kb on + strand, within IAI46_22685at 4827.864 kb on - strand, within IAI46_22685at 4827.865 kb on + strand, within IAI46_22685at 4827.866 kb on - strand, within IAI46_22685at 4827.876 kb on + strand, within IAI46_22685at 4827.896 kb on - strand, within IAI46_22685at 4827.896 kb on - strand, within IAI46_22685at 4827.924 kb on + strand, within IAI46_22685at 4827.924 kb on + strand, within IAI46_22685at 4827.924 kb on + strand, within IAI46_22685at 4827.925 kb on - strand, within IAI46_22685at 4827.925 kb on - strand, within IAI46_22685at 4828.023 kb on + strand, within IAI46_22685at 4828.023 kb on + strand, within IAI46_22685at 4828.023 kb on + strand, within IAI46_22685at 4828.024 kb on - strand, within IAI46_22685at 4828.027 kb on + strand, within IAI46_22685at 4828.027 kb on + strand, within IAI46_22685at 4828.027 kb on + strand, within IAI46_22685at 4828.028 kb on - strand, within IAI46_22685at 4828.051 kb on + strand, within IAI46_22685at 4828.052 kb on - strand, within IAI46_22685at 4828.167 kb on + strand, within IAI46_22685at 4828.172 kb on + strand, within IAI46_22685at 4828.172 kb on + strand, within IAI46_22685at 4828.172 kb on + strand, within IAI46_22685at 4828.172 kb on + strand, within IAI46_22685at 4828.172 kb on + strand, within IAI46_22685at 4828.173 kb on - strand, within IAI46_22685at 4828.173 kb on - strand, within IAI46_22685at 4828.173 kb on - strand, within IAI46_22685at 4828.173 kb on - strand, within IAI46_22685at 4828.220 kb on + strandat 4828.221 kb on - strandat 4828.221 kb on - strandat 4828.221 kb on - strandat 4828.235 kb on + strandat 4828.236 kb on - strandat 4828.236 kb on - strandat 4828.309 kb on - strandat 4828.321 kb on + strandat 4828.322 kb on - strandat 4828.637 kb on + strand, within IAI46_22690at 4828.637 kb on + strand, within IAI46_22690at 4828.638 kb on - strand, within IAI46_22690at 4828.638 kb on - strand, within IAI46_22690at 4828.812 kb on + strand, within IAI46_22690at 4828.813 kb on - strand, within IAI46_22690at 4828.813 kb on - strand, within IAI46_22690at 4828.813 kb on - strand, within IAI46_22690at 4828.813 kb on - strand, within IAI46_22690at 4828.813 kb on - strand, within IAI46_22690at 4828.849 kb on + strand, within IAI46_22690at 4828.928 kb on - strand, within IAI46_22690at 4828.928 kb on - strand, within IAI46_22690at 4828.933 kb on + strand, within IAI46_22690at 4828.933 kb on + strand, within IAI46_22690at 4828.934 kb on - strand, within IAI46_22690at 4829.062 kb on - strand, within IAI46_22690at 4829.134 kb on + strandat 4829.134 kb on + strandat 4829.193 kb on - strandat 4829.193 kb on - strandat 4829.207 kb on - strandat 4829.242 kb on - strandat 4829.521 kb on + strandat 4829.521 kb on + strandat 4829.522 kb on - strandat 4829.522 kb on - strandat 4829.522 kb on - strandat 4829.564 kb on + strandat 4829.602 kb on + strand, within IAI46_22695at 4829.602 kb on + strand, within IAI46_22695at 4829.611 kb on + strand, within IAI46_22695at 4829.719 kb on - strand, within IAI46_22695at 4829.774 kb on + strand, within IAI46_22695at 4829.774 kb on + strand, within IAI46_22695at 4829.775 kb on - strand, within IAI46_22695at 4829.848 kb on - strand, within IAI46_22695at 4829.953 kb on - strand, within IAI46_22695at 4830.018 kb on + strand, within IAI46_22695at 4830.019 kb on - strand, within IAI46_22695at 4830.105 kb on + strand, within IAI46_22695at 4830.128 kb on + strand, within IAI46_22695at 4830.128 kb on + strand, within IAI46_22695at 4830.129 kb on - strand, within IAI46_22695at 4830.131 kb on + strand, within IAI46_22695at 4830.132 kb on - strand, within IAI46_22695at 4830.132 kb on - strand, within IAI46_22695at 4830.132 kb on - strand, within IAI46_22695at 4830.138 kb on - strand, within IAI46_22695at 4830.138 kb on - strand, within IAI46_22695at 4830.138 kb on - strand, within IAI46_22695at 4830.138 kb on - strand, within IAI46_22695at 4830.138 kb on - strand, within IAI46_22695at 4830.178 kb on + strand, within IAI46_22695

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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4,827,389 + IAI46_22685 0.33 -0.3
4,827,390 + IAI46_22685 0.34 -0.3
4,827,390 + IAI46_22685 0.34 +0.2
4,827,392 + IAI46_22685 0.34 -1.2
4,827,392 + IAI46_22685 0.34 -0.3
4,827,392 + IAI46_22685 0.34 -0.6
4,827,393 - IAI46_22685 0.34 +0.7
4,827,450 + IAI46_22685 0.38 +0.5
4,827,464 - IAI46_22685 0.39 +0.6
4,827,574 + IAI46_22685 0.46 -0.5
4,827,575 - IAI46_22685 0.46 +0.2
4,827,674 + IAI46_22685 0.53 +0.5
4,827,675 - IAI46_22685 0.53 +0.1
4,827,722 + IAI46_22685 0.57 -1.2
4,827,863 + IAI46_22685 0.66 +0.4
4,827,864 - IAI46_22685 0.66 -0.9
4,827,865 + IAI46_22685 0.66 -0.6
4,827,866 - IAI46_22685 0.66 +1.3
4,827,876 + IAI46_22685 0.67 -1.0
4,827,896 - IAI46_22685 0.69 -0.9
4,827,896 - IAI46_22685 0.69 -0.7
4,827,924 + IAI46_22685 0.70 -0.1
4,827,924 + IAI46_22685 0.70 -0.9
4,827,924 + IAI46_22685 0.70 -0.2
4,827,925 - IAI46_22685 0.71 -0.4
4,827,925 - IAI46_22685 0.71 -0.5
4,828,023 + IAI46_22685 0.77 -0.3
4,828,023 + IAI46_22685 0.77 +0.3
4,828,023 + IAI46_22685 0.77 -0.5
4,828,024 - IAI46_22685 0.77 +0.4
4,828,027 + IAI46_22685 0.78 -0.6
4,828,027 + IAI46_22685 0.78 -0.5
4,828,027 + IAI46_22685 0.78 -0.3
4,828,028 - IAI46_22685 0.78 +0.3
4,828,051 + IAI46_22685 0.79 +0.6
4,828,052 - IAI46_22685 0.79 +1.3
4,828,167 + IAI46_22685 0.87 -0.5
4,828,172 + IAI46_22685 0.88 -1.0
4,828,172 + IAI46_22685 0.88 -0.0
4,828,172 + IAI46_22685 0.88 +0.4
4,828,172 + IAI46_22685 0.88 +0.3
4,828,172 + IAI46_22685 0.88 -0.9
4,828,173 - IAI46_22685 0.88 -0.7
4,828,173 - IAI46_22685 0.88 +0.1
4,828,173 - IAI46_22685 0.88 +0.5
4,828,173 - IAI46_22685 0.88 +0.4
4,828,220 + +0.1
4,828,221 - -1.0
4,828,221 - -0.3
4,828,221 - -0.7
4,828,235 + +0.4
4,828,236 - +0.3
4,828,236 - -0.1
4,828,309 - +0.2
4,828,321 + -0.1
4,828,322 - -0.3
4,828,637 + IAI46_22690 0.32 +0.1
4,828,637 + IAI46_22690 0.32 +1.0
4,828,638 - IAI46_22690 0.33 -0.3
4,828,638 - IAI46_22690 0.33 -0.4
4,828,812 + IAI46_22690 0.53 -0.1
4,828,813 - IAI46_22690 0.53 -0.4
4,828,813 - IAI46_22690 0.53 +1.1
4,828,813 - IAI46_22690 0.53 -0.5
4,828,813 - IAI46_22690 0.53 +1.4
4,828,813 - IAI46_22690 0.53 +0.3
4,828,849 + IAI46_22690 0.57 +0.0
4,828,928 - IAI46_22690 0.66 +0.1
4,828,928 - IAI46_22690 0.66 -0.5
4,828,933 + IAI46_22690 0.67 +0.1
4,828,933 + IAI46_22690 0.67 +1.1
4,828,934 - IAI46_22690 0.67 -0.2
4,829,062 - IAI46_22690 0.82 -0.6
4,829,134 + -0.1
4,829,134 + +0.5
4,829,193 - +0.3
4,829,193 - +0.2
4,829,207 - +1.5
4,829,242 - -1.9
4,829,521 + -0.9
4,829,521 + +0.0
4,829,522 - +1.1
4,829,522 - -0.1
4,829,522 - -0.0
4,829,564 + -0.7
4,829,602 + IAI46_22695 0.10 -0.1
4,829,602 + IAI46_22695 0.10 -0.0
4,829,611 + IAI46_22695 0.10 -0.6
4,829,719 - IAI46_22695 0.13 +0.3
4,829,774 + IAI46_22695 0.15 +0.5
4,829,774 + IAI46_22695 0.15 -0.7
4,829,775 - IAI46_22695 0.15 +0.2
4,829,848 - IAI46_22695 0.17 +0.8
4,829,953 - IAI46_22695 0.19 +1.1
4,830,018 + IAI46_22695 0.21 -0.0
4,830,019 - IAI46_22695 0.21 -0.2
4,830,105 + IAI46_22695 0.23 -0.1
4,830,128 + IAI46_22695 0.24 +1.8
4,830,128 + IAI46_22695 0.24 +0.2
4,830,129 - IAI46_22695 0.24 -0.3
4,830,131 + IAI46_22695 0.24 +1.5
4,830,132 - IAI46_22695 0.24 +0.6
4,830,132 - IAI46_22695 0.24 +0.3
4,830,132 - IAI46_22695 0.24 +0.2
4,830,138 - IAI46_22695 0.24 -0.2
4,830,138 - IAI46_22695 0.24 -0.9
4,830,138 - IAI46_22695 0.24 +0.3
4,830,138 - IAI46_22695 0.24 -0.0
4,830,138 - IAI46_22695 0.24 +0.6
4,830,178 + IAI46_22695 0.25 -0.8

Or see this region's nucleotide sequence