Strain Fitness in Serratia liquefaciens MT49 around IAI46_22135

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_22125 and IAI46_22130 are separated by 48 nucleotidesIAI46_22130 and IAI46_22135 are separated by 19 nucleotidesIAI46_22135 and IAI46_22140 are separated by 148 nucleotidesIAI46_22140 and IAI46_22145 are separated by 73 nucleotides IAI46_22125: IAI46_22125 - RNA polymerase sigma factor RpoD, at 4,714,122 to 4,715,957 _22125 IAI46_22130: IAI46_22130 - nuclear transport factor 2 family protein, at 4,716,006 to 4,716,458 _22130 IAI46_22135: IAI46_22135 - G/U mismatch-specific DNA glycosylase, at 4,716,478 to 4,716,966 _22135 IAI46_22140: IAI46_22140 - tRNA-Ile, at 4,717,115 to 4,717,191 _22140 IAI46_22145: IAI46_22145 - HPP family protein, at 4,717,265 to 4,717,981 _22145 Position (kb) 4716 4717Strain fitness (log2 ratio) -2 -1 0 1at 4715.955 kb on + strandat 4715.955 kb on + strandat 4715.956 kb on - strandat 4715.956 kb on - strandat 4715.956 kb on - strandat 4716.148 kb on - strand, within IAI46_22130at 4716.148 kb on - strand, within IAI46_22130at 4716.163 kb on + strand, within IAI46_22130at 4716.163 kb on + strand, within IAI46_22130at 4716.163 kb on + strand, within IAI46_22130at 4716.164 kb on - strand, within IAI46_22130at 4716.164 kb on - strand, within IAI46_22130at 4716.164 kb on - strand, within IAI46_22130at 4716.286 kb on + strand, within IAI46_22130at 4716.287 kb on - strand, within IAI46_22130at 4716.323 kb on - strand, within IAI46_22130at 4716.329 kb on + strand, within IAI46_22130at 4716.330 kb on - strand, within IAI46_22130at 4716.330 kb on - strand, within IAI46_22130at 4716.333 kb on + strand, within IAI46_22130at 4716.334 kb on - strand, within IAI46_22130at 4716.347 kb on - strand, within IAI46_22130at 4716.444 kb on - strandat 4716.516 kb on + strandat 4716.516 kb on + strandat 4716.803 kb on - strand, within IAI46_22135at 4716.967 kb on - strandat 4716.995 kb on + strandat 4716.995 kb on + strandat 4717.022 kb on + strandat 4717.027 kb on - strandat 4717.027 kb on - strandat 4717.036 kb on + strandat 4717.059 kb on + strandat 4717.060 kb on - strandat 4717.060 kb on - strandat 4717.060 kb on - strandat 4717.060 kb on - strandat 4717.060 kb on - strandat 4717.069 kb on + strandat 4717.070 kb on - strandat 4717.070 kb on - strandat 4717.070 kb on - strandat 4717.229 kb on + strandat 4717.229 kb on + strandat 4717.393 kb on + strand, within IAI46_22145at 4717.394 kb on - strand, within IAI46_22145at 4717.502 kb on + strand, within IAI46_22145at 4717.503 kb on - strand, within IAI46_22145at 4717.503 kb on - strand, within IAI46_22145at 4717.503 kb on - strand, within IAI46_22145at 4717.503 kb on - strand, within IAI46_22145at 4717.540 kb on + strand, within IAI46_22145at 4717.540 kb on + strand, within IAI46_22145at 4717.540 kb on + strand, within IAI46_22145at 4717.541 kb on - strand, within IAI46_22145at 4717.541 kb on - strand, within IAI46_22145at 4717.541 kb on - strand, within IAI46_22145at 4717.559 kb on - strand, within IAI46_22145at 4717.624 kb on + strand, within IAI46_22145at 4717.624 kb on + strand, within IAI46_22145at 4717.723 kb on + strand, within IAI46_22145at 4717.723 kb on + strand, within IAI46_22145at 4717.723 kb on + strand, within IAI46_22145at 4717.724 kb on - strand, within IAI46_22145at 4717.724 kb on - strand, within IAI46_22145at 4717.724 kb on - strand, within IAI46_22145at 4717.784 kb on + strand, within IAI46_22145at 4717.784 kb on + strand, within IAI46_22145at 4717.810 kb on + strand, within IAI46_22145at 4717.811 kb on - strand, within IAI46_22145at 4717.824 kb on - strand, within IAI46_22145

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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4,715,955 + +0.7
4,715,955 + -0.0
4,715,956 - -0.3
4,715,956 - -1.2
4,715,956 - -1.3
4,716,148 - IAI46_22130 0.31 -2.3
4,716,148 - IAI46_22130 0.31 +0.2
4,716,163 + IAI46_22130 0.35 +0.8
4,716,163 + IAI46_22130 0.35 +0.4
4,716,163 + IAI46_22130 0.35 +1.5
4,716,164 - IAI46_22130 0.35 -0.9
4,716,164 - IAI46_22130 0.35 -0.5
4,716,164 - IAI46_22130 0.35 +0.2
4,716,286 + IAI46_22130 0.62 +0.4
4,716,287 - IAI46_22130 0.62 -1.0
4,716,323 - IAI46_22130 0.70 -0.6
4,716,329 + IAI46_22130 0.71 -0.3
4,716,330 - IAI46_22130 0.72 +1.0
4,716,330 - IAI46_22130 0.72 -0.2
4,716,333 + IAI46_22130 0.72 -0.5
4,716,334 - IAI46_22130 0.72 +0.9
4,716,347 - IAI46_22130 0.75 -0.0
4,716,444 - +0.8
4,716,516 + +0.1
4,716,516 + -2.3
4,716,803 - IAI46_22135 0.66 +0.8
4,716,967 - -1.4
4,716,995 + +0.2
4,716,995 + +0.7
4,717,022 + +0.5
4,717,027 - -0.7
4,717,027 - -0.1
4,717,036 + +0.2
4,717,059 + -0.3
4,717,060 - -0.3
4,717,060 - +0.5
4,717,060 - +0.1
4,717,060 - -0.5
4,717,060 - +0.4
4,717,069 + -0.0
4,717,070 - -1.4
4,717,070 - -0.1
4,717,070 - +0.3
4,717,229 + +0.0
4,717,229 + -0.7
4,717,393 + IAI46_22145 0.18 -0.6
4,717,394 - IAI46_22145 0.18 -0.0
4,717,502 + IAI46_22145 0.33 +0.1
4,717,503 - IAI46_22145 0.33 -0.3
4,717,503 - IAI46_22145 0.33 +0.1
4,717,503 - IAI46_22145 0.33 +0.1
4,717,503 - IAI46_22145 0.33 +0.1
4,717,540 + IAI46_22145 0.38 -0.0
4,717,540 + IAI46_22145 0.38 -0.2
4,717,540 + IAI46_22145 0.38 -0.2
4,717,541 - IAI46_22145 0.38 +0.2
4,717,541 - IAI46_22145 0.38 +0.4
4,717,541 - IAI46_22145 0.38 -0.5
4,717,559 - IAI46_22145 0.41 +1.1
4,717,624 + IAI46_22145 0.50 +1.4
4,717,624 + IAI46_22145 0.50 -0.9
4,717,723 + IAI46_22145 0.64 -0.4
4,717,723 + IAI46_22145 0.64 -0.7
4,717,723 + IAI46_22145 0.64 +0.4
4,717,724 - IAI46_22145 0.64 +0.2
4,717,724 - IAI46_22145 0.64 -0.8
4,717,724 - IAI46_22145 0.64 -0.4
4,717,784 + IAI46_22145 0.72 +0.8
4,717,784 + IAI46_22145 0.72 -1.7
4,717,810 + IAI46_22145 0.76 -0.4
4,717,811 - IAI46_22145 0.76 +0.2
4,717,824 - IAI46_22145 0.78 -1.3

Or see this region's nucleotide sequence