Strain Fitness in Serratia liquefaciens MT49 around IAI46_21295

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_21290 and IAI46_21295 are separated by 27 nucleotidesIAI46_21295 and IAI46_21300 are separated by 34 nucleotidesIAI46_21300 and IAI46_21305 are separated by 139 nucleotides IAI46_21290: IAI46_21290 - polyamine aminopropyltransferase, at 4,510,302 to 4,511,165 _21290 IAI46_21295: IAI46_21295 - adenosylmethionine decarboxylase, at 4,511,193 to 4,511,987 _21295 IAI46_21300: IAI46_21300 - YacL family protein, at 4,512,022 to 4,512,384 _21300 IAI46_21305: IAI46_21305 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase, at 4,512,524 to 4,515,121 _21305 Position (kb) 4511 4512Strain fitness (log2 ratio) -2 -1 0 1 2at 4510.249 kb on + strandat 4510.249 kb on + strandat 4510.249 kb on + strandat 4510.250 kb on - strandat 4510.250 kb on - strandat 4510.253 kb on + strandat 4510.253 kb on + strandat 4510.253 kb on + strandat 4510.253 kb on + strandat 4510.253 kb on + strandat 4510.253 kb on + strandat 4510.253 kb on + strandat 4510.254 kb on - strandat 4510.254 kb on - strandat 4510.254 kb on - strandat 4510.254 kb on - strandat 4510.254 kb on - strandat 4510.254 kb on - strandat 4510.254 kb on - strandat 4510.283 kb on + strandat 4510.284 kb on - strandat 4510.284 kb on - strandat 4510.377 kb on + strandat 4510.571 kb on + strand, within IAI46_21290at 4510.572 kb on - strand, within IAI46_21290at 4510.572 kb on - strand, within IAI46_21290at 4510.659 kb on + strand, within IAI46_21290at 4510.660 kb on - strand, within IAI46_21290at 4510.667 kb on + strand, within IAI46_21290at 4510.687 kb on - strand, within IAI46_21290at 4510.703 kb on + strand, within IAI46_21290at 4510.703 kb on + strand, within IAI46_21290at 4510.766 kb on + strand, within IAI46_21290at 4510.766 kb on + strand, within IAI46_21290at 4510.766 kb on + strand, within IAI46_21290at 4510.767 kb on - strand, within IAI46_21290at 4510.767 kb on - strand, within IAI46_21290at 4510.767 kb on - strand, within IAI46_21290at 4510.824 kb on + strand, within IAI46_21290at 4510.914 kb on - strand, within IAI46_21290at 4510.936 kb on - strand, within IAI46_21290at 4510.978 kb on - strand, within IAI46_21290at 4510.978 kb on - strand, within IAI46_21290at 4510.978 kb on - strand, within IAI46_21290at 4510.980 kb on + strand, within IAI46_21290at 4510.981 kb on - strand, within IAI46_21290at 4510.991 kb on + strand, within IAI46_21290at 4510.992 kb on - strand, within IAI46_21290at 4510.992 kb on - strand, within IAI46_21290at 4510.992 kb on - strand, within IAI46_21290at 4511.077 kb on + strand, within IAI46_21290at 4511.091 kb on + strandat 4511.091 kb on + strandat 4511.092 kb on - strandat 4511.092 kb on - strandat 4511.092 kb on - strandat 4511.094 kb on - strandat 4511.163 kb on + strandat 4511.176 kb on - strandat 4511.198 kb on + strandat 4511.198 kb on + strandat 4511.199 kb on - strandat 4511.204 kb on - strandat 4511.253 kb on + strandat 4511.254 kb on - strandat 4511.295 kb on + strand, within IAI46_21295at 4511.295 kb on + strand, within IAI46_21295at 4511.296 kb on - strand, within IAI46_21295at 4511.297 kb on + strand, within IAI46_21295at 4511.319 kb on + strand, within IAI46_21295at 4511.319 kb on + strand, within IAI46_21295at 4511.319 kb on + strand, within IAI46_21295at 4511.320 kb on - strand, within IAI46_21295at 4511.403 kb on + strand, within IAI46_21295at 4511.543 kb on + strand, within IAI46_21295at 4511.543 kb on + strand, within IAI46_21295at 4511.543 kb on + strand, within IAI46_21295at 4511.543 kb on + strand, within IAI46_21295at 4511.543 kb on + strand, within IAI46_21295at 4511.543 kb on + strand, within IAI46_21295at 4511.544 kb on - strand, within IAI46_21295at 4511.544 kb on - strand, within IAI46_21295at 4511.544 kb on - strand, within IAI46_21295at 4511.548 kb on - strand, within IAI46_21295at 4511.730 kb on + strand, within IAI46_21295at 4511.730 kb on + strand, within IAI46_21295at 4511.765 kb on + strand, within IAI46_21295at 4511.765 kb on + strand, within IAI46_21295at 4511.766 kb on - strand, within IAI46_21295at 4511.766 kb on - strand, within IAI46_21295at 4511.766 kb on - strand, within IAI46_21295at 4511.778 kb on - strand, within IAI46_21295at 4511.778 kb on - strand, within IAI46_21295at 4511.778 kb on - strand, within IAI46_21295at 4511.872 kb on - strand, within IAI46_21295at 4511.915 kb on + strandat 4511.961 kb on + strandat 4511.962 kb on - strandat 4511.962 kb on - strandat 4511.962 kb on - strandat 4511.972 kb on + strandat 4511.972 kb on + strandat 4511.986 kb on - strandat 4512.017 kb on + strandat 4512.026 kb on + strandat 4512.026 kb on + strandat 4512.047 kb on + strandat 4512.048 kb on - strandat 4512.058 kb on + strandat 4512.058 kb on + strandat 4512.058 kb on + strandat 4512.107 kb on + strand, within IAI46_21300at 4512.108 kb on - strand, within IAI46_21300at 4512.110 kb on + strand, within IAI46_21300at 4512.110 kb on + strand, within IAI46_21300at 4512.110 kb on + strand, within IAI46_21300at 4512.110 kb on + strand, within IAI46_21300at 4512.111 kb on - strand, within IAI46_21300at 4512.111 kb on - strand, within IAI46_21300at 4512.198 kb on - strand, within IAI46_21300at 4512.198 kb on - strand, within IAI46_21300at 4512.347 kb on - strand, within IAI46_21300at 4512.378 kb on - strandat 4512.384 kb on + strandat 4512.412 kb on - strandat 4512.416 kb on + strandat 4512.416 kb on + strandat 4512.417 kb on - strandat 4512.417 kb on - strandat 4512.515 kb on + strandat 4512.515 kb on + strandat 4512.515 kb on + strandat 4512.515 kb on + strandat 4512.516 kb on - strandat 4512.518 kb on - strandat 4512.525 kb on + strandat 4512.567 kb on + strandat 4512.567 kb on + strandat 4512.567 kb on + strandat 4512.600 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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4,510,249 + -0.1
4,510,249 + -0.3
4,510,249 + +0.6
4,510,250 - +0.6
4,510,250 - -0.0
4,510,253 + +0.7
4,510,253 + +0.2
4,510,253 + +0.3
4,510,253 + -0.2
4,510,253 + +0.8
4,510,253 + +0.1
4,510,253 + +0.2
4,510,254 - +0.3
4,510,254 - -0.6
4,510,254 - +0.4
4,510,254 - -0.1
4,510,254 - -0.0
4,510,254 - +0.4
4,510,254 - -0.1
4,510,283 + -0.1
4,510,284 - -0.6
4,510,284 - -0.0
4,510,377 + +0.1
4,510,571 + IAI46_21290 0.31 +1.1
4,510,572 - IAI46_21290 0.31 +0.5
4,510,572 - IAI46_21290 0.31 +0.8
4,510,659 + IAI46_21290 0.41 +1.1
4,510,660 - IAI46_21290 0.41 +2.2
4,510,667 + IAI46_21290 0.42 +0.8
4,510,687 - IAI46_21290 0.45 -0.6
4,510,703 + IAI46_21290 0.46 +0.5
4,510,703 + IAI46_21290 0.46 -0.1
4,510,766 + IAI46_21290 0.54 -0.3
4,510,766 + IAI46_21290 0.54 +1.7
4,510,766 + IAI46_21290 0.54 +0.7
4,510,767 - IAI46_21290 0.54 +0.3
4,510,767 - IAI46_21290 0.54 +2.2
4,510,767 - IAI46_21290 0.54 +0.2
4,510,824 + IAI46_21290 0.60 -2.3
4,510,914 - IAI46_21290 0.71 +0.8
4,510,936 - IAI46_21290 0.73 +0.3
4,510,978 - IAI46_21290 0.78 -0.1
4,510,978 - IAI46_21290 0.78 -1.5
4,510,978 - IAI46_21290 0.78 +0.5
4,510,980 + IAI46_21290 0.78 +0.1
4,510,981 - IAI46_21290 0.79 +0.5
4,510,991 + IAI46_21290 0.80 +0.8
4,510,992 - IAI46_21290 0.80 +0.2
4,510,992 - IAI46_21290 0.80 +0.6
4,510,992 - IAI46_21290 0.80 +1.2
4,511,077 + IAI46_21290 0.90 +0.4
4,511,091 + -2.2
4,511,091 + +0.8
4,511,092 - +0.1
4,511,092 - +0.3
4,511,092 - +0.4
4,511,094 - -0.0
4,511,163 + +0.4
4,511,176 - -0.2
4,511,198 + +1.8
4,511,198 + +0.3
4,511,199 - +0.9
4,511,204 - -0.5
4,511,253 + +0.1
4,511,254 - +0.5
4,511,295 + IAI46_21295 0.13 +0.3
4,511,295 + IAI46_21295 0.13 +0.2
4,511,296 - IAI46_21295 0.13 +0.6
4,511,297 + IAI46_21295 0.13 +0.6
4,511,319 + IAI46_21295 0.16 +0.4
4,511,319 + IAI46_21295 0.16 +0.4
4,511,319 + IAI46_21295 0.16 +0.2
4,511,320 - IAI46_21295 0.16 -0.9
4,511,403 + IAI46_21295 0.26 -0.6
4,511,543 + IAI46_21295 0.44 -1.4
4,511,543 + IAI46_21295 0.44 +1.1
4,511,543 + IAI46_21295 0.44 -0.1
4,511,543 + IAI46_21295 0.44 -0.1
4,511,543 + IAI46_21295 0.44 -0.5
4,511,543 + IAI46_21295 0.44 +0.5
4,511,544 - IAI46_21295 0.44 +0.3
4,511,544 - IAI46_21295 0.44 +0.8
4,511,544 - IAI46_21295 0.44 -0.1
4,511,548 - IAI46_21295 0.45 +0.7
4,511,730 + IAI46_21295 0.68 +0.7
4,511,730 + IAI46_21295 0.68 +0.4
4,511,765 + IAI46_21295 0.72 +0.3
4,511,765 + IAI46_21295 0.72 +0.6
4,511,766 - IAI46_21295 0.72 +0.1
4,511,766 - IAI46_21295 0.72 +0.4
4,511,766 - IAI46_21295 0.72 -0.0
4,511,778 - IAI46_21295 0.74 +0.7
4,511,778 - IAI46_21295 0.74 +0.4
4,511,778 - IAI46_21295 0.74 -0.3
4,511,872 - IAI46_21295 0.85 -0.2
4,511,915 + -0.4
4,511,961 + +0.2
4,511,962 - +0.6
4,511,962 - +1.3
4,511,962 - -1.1
4,511,972 + +0.1
4,511,972 + +0.2
4,511,986 - -0.0
4,512,017 + -0.2
4,512,026 + +0.3
4,512,026 + +0.4
4,512,047 + +0.1
4,512,048 - +0.3
4,512,058 + +0.3
4,512,058 + +1.0
4,512,058 + +0.5
4,512,107 + IAI46_21300 0.23 +0.9
4,512,108 - IAI46_21300 0.24 +0.8
4,512,110 + IAI46_21300 0.24 +0.3
4,512,110 + IAI46_21300 0.24 +0.1
4,512,110 + IAI46_21300 0.24 +0.0
4,512,110 + IAI46_21300 0.24 -0.3
4,512,111 - IAI46_21300 0.25 -0.1
4,512,111 - IAI46_21300 0.25 -0.1
4,512,198 - IAI46_21300 0.48 -1.4
4,512,198 - IAI46_21300 0.48 +0.3
4,512,347 - IAI46_21300 0.90 +0.6
4,512,378 - +0.5
4,512,384 + -0.3
4,512,412 - +1.2
4,512,416 + -0.3
4,512,416 + +0.2
4,512,417 - -2.1
4,512,417 - -0.1
4,512,515 + +0.1
4,512,515 + +0.4
4,512,515 + -0.4
4,512,515 + -0.2
4,512,516 - -0.0
4,512,518 - -1.1
4,512,525 + -0.6
4,512,567 + +0.9
4,512,567 + +0.5
4,512,567 + -0.5
4,512,600 + -1.1

Or see this region's nucleotide sequence