Strain Fitness in Serratia liquefaciens MT49 around IAI46_21245

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_21240 and IAI46_21245 are separated by 147 nucleotidesIAI46_21245 and IAI46_21250 are separated by 135 nucleotidesIAI46_21250 and IAI46_21255 are separated by 203 nucleotides IAI46_21240: IAI46_21240 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 4,500,706 to 4,501,500 _21240 IAI46_21245: IAI46_21245 - pantoate--beta-alanine ligase, at 4,501,648 to 4,502,502 _21245 IAI46_21250: IAI46_21250 - aspartate 1-decarboxylase, at 4,502,638 to 4,503,018 _21250 IAI46_21255: IAI46_21255 - polysaccharide deacetylase family protein, at 4,503,222 to 4,504,502 _21255 Position (kb) 4501 4502 4503Strain fitness (log2 ratio) -1 0 1at 4500.676 kb on - strandat 4500.701 kb on + strandat 4500.702 kb on - strandat 4500.702 kb on - strandat 4500.779 kb on - strandat 4500.833 kb on + strand, within IAI46_21240at 4500.904 kb on + strand, within IAI46_21240at 4500.904 kb on + strand, within IAI46_21240at 4500.905 kb on - strand, within IAI46_21240at 4500.909 kb on + strand, within IAI46_21240at 4500.909 kb on + strand, within IAI46_21240at 4500.909 kb on + strand, within IAI46_21240at 4500.910 kb on - strand, within IAI46_21240at 4500.966 kb on + strand, within IAI46_21240at 4500.974 kb on - strand, within IAI46_21240at 4500.974 kb on - strand, within IAI46_21240at 4501.236 kb on - strand, within IAI46_21240at 4501.444 kb on + strandat 4501.444 kb on + strandat 4501.444 kb on + strandat 4501.445 kb on - strandat 4501.445 kb on - strandat 4501.445 kb on - strandat 4501.445 kb on - strandat 4501.445 kb on - strandat 4501.446 kb on + strandat 4501.446 kb on + strandat 4501.446 kb on + strandat 4501.446 kb on + strandat 4501.447 kb on - strandat 4501.447 kb on - strandat 4501.447 kb on - strandat 4501.447 kb on - strandat 4501.447 kb on - strandat 4501.472 kb on - strandat 4501.495 kb on - strandat 4501.498 kb on + strandat 4501.511 kb on + strandat 4501.512 kb on - strandat 4501.515 kb on + strandat 4501.515 kb on + strandat 4501.516 kb on - strandat 4501.570 kb on + strandat 4501.571 kb on - strandat 4501.571 kb on - strandat 4501.571 kb on - strandat 4501.571 kb on - strandat 4501.571 kb on - strandat 4501.571 kb on - strandat 4501.571 kb on - strandat 4501.576 kb on + strandat 4501.576 kb on + strandat 4501.576 kb on + strandat 4501.577 kb on - strandat 4501.577 kb on - strandat 4501.577 kb on - strandat 4501.577 kb on - strandat 4501.579 kb on + strandat 4501.579 kb on + strandat 4501.580 kb on - strandat 4501.580 kb on - strandat 4501.627 kb on - strandat 4501.627 kb on - strandat 4501.631 kb on + strandat 4501.631 kb on + strandat 4501.642 kb on + strandat 4501.652 kb on + strandat 4501.652 kb on + strandat 4501.652 kb on + strandat 4501.653 kb on - strandat 4501.653 kb on - strandat 4501.758 kb on + strand, within IAI46_21245at 4501.759 kb on - strand, within IAI46_21245at 4501.810 kb on - strand, within IAI46_21245at 4501.907 kb on + strand, within IAI46_21245at 4501.939 kb on - strand, within IAI46_21245at 4501.942 kb on + strand, within IAI46_21245at 4501.942 kb on + strand, within IAI46_21245at 4501.942 kb on + strand, within IAI46_21245at 4501.942 kb on + strand, within IAI46_21245at 4501.942 kb on + strand, within IAI46_21245at 4501.942 kb on + strand, within IAI46_21245at 4501.943 kb on - strand, within IAI46_21245at 4501.970 kb on - strand, within IAI46_21245at 4501.970 kb on - strand, within IAI46_21245at 4501.979 kb on + strand, within IAI46_21245at 4501.979 kb on + strand, within IAI46_21245at 4502.500 kb on + strandat 4502.500 kb on + strandat 4502.547 kb on - strandat 4502.562 kb on + strandat 4502.562 kb on + strandat 4502.563 kb on - strandat 4502.563 kb on - strandat 4502.628 kb on - strandat 4502.631 kb on + strandat 4502.632 kb on - strandat 4502.637 kb on + strandat 4502.638 kb on - strandat 4502.642 kb on + strandat 4502.642 kb on + strandat 4502.643 kb on - strandat 4502.643 kb on - strandat 4502.643 kb on - strandat 4502.643 kb on - strandat 4502.643 kb on - strandat 4502.643 kb on - strandat 4502.646 kb on + strandat 4502.646 kb on + strandat 4502.646 kb on + strandat 4502.646 kb on + strandat 4502.646 kb on + strandat 4502.646 kb on + strandat 4502.647 kb on - strandat 4502.647 kb on - strandat 4502.647 kb on - strandat 4502.649 kb on + strandat 4502.649 kb on + strandat 4502.649 kb on + strandat 4502.649 kb on + strandat 4502.649 kb on + strandat 4502.649 kb on + strandat 4502.649 kb on + strandat 4502.650 kb on - strandat 4502.650 kb on - strandat 4502.650 kb on - strandat 4502.702 kb on - strand, within IAI46_21250at 4502.758 kb on + strand, within IAI46_21250at 4502.759 kb on - strand, within IAI46_21250at 4502.776 kb on + strand, within IAI46_21250at 4502.777 kb on - strand, within IAI46_21250at 4502.777 kb on - strand, within IAI46_21250at 4502.777 kb on - strand, within IAI46_21250at 4502.777 kb on - strand, within IAI46_21250at 4502.777 kb on - strand, within IAI46_21250at 4502.778 kb on + strand, within IAI46_21250at 4502.779 kb on - strand, within IAI46_21250at 4502.787 kb on + strand, within IAI46_21250at 4502.809 kb on + strand, within IAI46_21250at 4502.905 kb on + strand, within IAI46_21250at 4502.905 kb on + strand, within IAI46_21250at 4502.905 kb on + strand, within IAI46_21250at 4502.906 kb on - strand, within IAI46_21250at 4502.906 kb on - strand, within IAI46_21250at 4502.906 kb on - strand, within IAI46_21250at 4502.906 kb on - strand, within IAI46_21250at 4502.974 kb on - strand, within IAI46_21250at 4502.974 kb on - strand, within IAI46_21250at 4502.974 kb on - strand, within IAI46_21250at 4503.066 kb on + strandat 4503.066 kb on + strandat 4503.069 kb on - strandat 4503.167 kb on + strandat 4503.167 kb on + strandat 4503.183 kb on + strandat 4503.224 kb on - strandat 4503.299 kb on - strandat 4503.315 kb on - strandat 4503.316 kb on + strandat 4503.317 kb on - strandat 4503.317 kb on - strandat 4503.408 kb on - strand, within IAI46_21255at 4503.409 kb on + strand, within IAI46_21255at 4503.410 kb on - strand, within IAI46_21255at 4503.433 kb on + strand, within IAI46_21255at 4503.433 kb on + strand, within IAI46_21255at 4503.433 kb on + strand, within IAI46_21255at 4503.434 kb on - strand, within IAI46_21255at 4503.434 kb on - strand, within IAI46_21255at 4503.434 kb on - strand, within IAI46_21255at 4503.434 kb on - strand, within IAI46_21255at 4503.434 kb on - strand, within IAI46_21255at 4503.434 kb on - strand, within IAI46_21255at 4503.434 kb on - strand, within IAI46_21255at 4503.492 kb on + strand, within IAI46_21255at 4503.492 kb on + strand, within IAI46_21255at 4503.492 kb on + strand, within IAI46_21255at 4503.492 kb on + strand, within IAI46_21255at 4503.492 kb on + strand, within IAI46_21255at 4503.493 kb on - strand, within IAI46_21255at 4503.493 kb on - strand, within IAI46_21255at 4503.493 kb on - strand, within IAI46_21255at 4503.493 kb on - strand, within IAI46_21255at 4503.493 kb on - strand, within IAI46_21255at 4503.493 kb on - strand, within IAI46_21255

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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4,500,676 - -1.4
4,500,701 + -0.5
4,500,702 - +0.3
4,500,702 - -0.7
4,500,779 - +0.6
4,500,833 + IAI46_21240 0.16 +0.2
4,500,904 + IAI46_21240 0.25 +0.1
4,500,904 + IAI46_21240 0.25 +0.2
4,500,905 - IAI46_21240 0.25 -0.1
4,500,909 + IAI46_21240 0.26 +0.6
4,500,909 + IAI46_21240 0.26 +0.4
4,500,909 + IAI46_21240 0.26 -1.0
4,500,910 - IAI46_21240 0.26 +1.2
4,500,966 + IAI46_21240 0.33 +0.3
4,500,974 - IAI46_21240 0.34 +1.6
4,500,974 - IAI46_21240 0.34 +0.1
4,501,236 - IAI46_21240 0.67 +1.6
4,501,444 + +0.5
4,501,444 + +0.5
4,501,444 + -0.2
4,501,445 - -1.0
4,501,445 - -1.2
4,501,445 - +0.2
4,501,445 - -0.1
4,501,445 - -0.3
4,501,446 + +1.0
4,501,446 + -0.7
4,501,446 + +0.4
4,501,446 + +0.1
4,501,447 - -0.7
4,501,447 - -0.7
4,501,447 - +0.5
4,501,447 - +0.1
4,501,447 - +0.7
4,501,472 - +1.2
4,501,495 - +0.6
4,501,498 + +0.2
4,501,511 + +0.0
4,501,512 - -0.2
4,501,515 + -0.1
4,501,515 + +0.5
4,501,516 - +0.5
4,501,570 + -0.8
4,501,571 - +0.9
4,501,571 - +0.5
4,501,571 - -0.2
4,501,571 - -0.2
4,501,571 - +0.8
4,501,571 - +0.3
4,501,571 - +0.6
4,501,576 + +0.2
4,501,576 + +0.2
4,501,576 + +0.4
4,501,577 - +0.2
4,501,577 - +1.3
4,501,577 - -0.4
4,501,577 - +0.3
4,501,579 + +0.5
4,501,579 + -0.2
4,501,580 - +0.3
4,501,580 - +0.1
4,501,627 - -0.2
4,501,627 - -0.8
4,501,631 + -0.4
4,501,631 + +0.1
4,501,642 + +1.4
4,501,652 + -0.3
4,501,652 + -0.0
4,501,652 + -1.4
4,501,653 - -0.2
4,501,653 - -0.4
4,501,758 + IAI46_21245 0.13 +1.2
4,501,759 - IAI46_21245 0.13 -0.8
4,501,810 - IAI46_21245 0.19 +0.2
4,501,907 + IAI46_21245 0.30 -0.0
4,501,939 - IAI46_21245 0.34 +0.3
4,501,942 + IAI46_21245 0.34 -0.5
4,501,942 + IAI46_21245 0.34 -1.3
4,501,942 + IAI46_21245 0.34 -1.3
4,501,942 + IAI46_21245 0.34 +0.4
4,501,942 + IAI46_21245 0.34 +1.2
4,501,942 + IAI46_21245 0.34 +0.5
4,501,943 - IAI46_21245 0.35 +1.1
4,501,970 - IAI46_21245 0.38 -0.1
4,501,970 - IAI46_21245 0.38 +1.2
4,501,979 + IAI46_21245 0.39 +0.1
4,501,979 + IAI46_21245 0.39 -0.9
4,502,500 + -0.3
4,502,500 + -0.1
4,502,547 - +0.3
4,502,562 + -0.2
4,502,562 + +0.3
4,502,563 - -0.6
4,502,563 - +0.1
4,502,628 - +0.0
4,502,631 + -1.5
4,502,632 - +0.5
4,502,637 + +0.3
4,502,638 - +0.5
4,502,642 + +0.1
4,502,642 + -1.5
4,502,643 - +1.5
4,502,643 - -0.4
4,502,643 - -0.3
4,502,643 - -0.1
4,502,643 - +0.8
4,502,643 - +0.6
4,502,646 + +1.2
4,502,646 + +1.6
4,502,646 + +0.8
4,502,646 + -0.4
4,502,646 + -1.3
4,502,646 + +0.5
4,502,647 - +0.2
4,502,647 - -0.1
4,502,647 - +0.6
4,502,649 + -0.3
4,502,649 + +1.2
4,502,649 + -0.1
4,502,649 + +0.0
4,502,649 + -0.8
4,502,649 + +0.1
4,502,649 + +1.3
4,502,650 - +0.2
4,502,650 - +1.1
4,502,650 - -0.4
4,502,702 - IAI46_21250 0.17 -1.3
4,502,758 + IAI46_21250 0.31 +0.5
4,502,759 - IAI46_21250 0.32 -0.6
4,502,776 + IAI46_21250 0.36 -0.1
4,502,777 - IAI46_21250 0.36 -0.3
4,502,777 - IAI46_21250 0.36 +0.1
4,502,777 - IAI46_21250 0.36 +1.4
4,502,777 - IAI46_21250 0.36 -0.3
4,502,777 - IAI46_21250 0.36 +0.6
4,502,778 + IAI46_21250 0.37 +0.3
4,502,779 - IAI46_21250 0.37 +0.4
4,502,787 + IAI46_21250 0.39 -0.2
4,502,809 + IAI46_21250 0.45 -0.1
4,502,905 + IAI46_21250 0.70 -0.8
4,502,905 + IAI46_21250 0.70 +0.9
4,502,905 + IAI46_21250 0.70 -1.6
4,502,906 - IAI46_21250 0.70 -1.0
4,502,906 - IAI46_21250 0.70 +0.8
4,502,906 - IAI46_21250 0.70 +0.4
4,502,906 - IAI46_21250 0.70 -1.0
4,502,974 - IAI46_21250 0.88 +0.8
4,502,974 - IAI46_21250 0.88 +0.7
4,502,974 - IAI46_21250 0.88 -0.0
4,503,066 + -0.6
4,503,066 + -0.5
4,503,069 - +0.5
4,503,167 + -0.2
4,503,167 + +1.2
4,503,183 + -0.3
4,503,224 - +0.1
4,503,299 - +0.7
4,503,315 - -0.1
4,503,316 + -0.1
4,503,317 - +0.5
4,503,317 - +0.2
4,503,408 - IAI46_21255 0.15 +0.3
4,503,409 + IAI46_21255 0.15 +0.7
4,503,410 - IAI46_21255 0.15 +0.4
4,503,433 + IAI46_21255 0.16 +0.6
4,503,433 + IAI46_21255 0.16 +0.2
4,503,433 + IAI46_21255 0.16 -0.2
4,503,434 - IAI46_21255 0.17 +0.1
4,503,434 - IAI46_21255 0.17 -0.6
4,503,434 - IAI46_21255 0.17 +1.0
4,503,434 - IAI46_21255 0.17 -0.6
4,503,434 - IAI46_21255 0.17 -0.8
4,503,434 - IAI46_21255 0.17 -0.1
4,503,434 - IAI46_21255 0.17 +0.2
4,503,492 + IAI46_21255 0.21 -0.8
4,503,492 + IAI46_21255 0.21 -0.8
4,503,492 + IAI46_21255 0.21 +0.1
4,503,492 + IAI46_21255 0.21 +0.5
4,503,492 + IAI46_21255 0.21 -0.5
4,503,493 - IAI46_21255 0.21 -0.7
4,503,493 - IAI46_21255 0.21 +0.2
4,503,493 - IAI46_21255 0.21 -0.4
4,503,493 - IAI46_21255 0.21 +0.2
4,503,493 - IAI46_21255 0.21 -0.1
4,503,493 - IAI46_21255 0.21 +0.9

Or see this region's nucleotide sequence