Strain Fitness in Serratia liquefaciens MT49 around IAI46_20315

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_20310 and IAI46_20315 are separated by 618 nucleotidesIAI46_20315 and IAI46_20320 are separated by 408 nucleotides IAI46_20310: IAI46_20310 - MFS transporter, at 4,291,324 to 4,292,562 _20310 IAI46_20315: IAI46_20315 - SecY-interacting protein, at 4,293,181 to 4,293,732 _20315 IAI46_20320: IAI46_20320 - LOG family protein, at 4,294,141 to 4,295,505 _20320 Position (kb) 4293 4294Strain fitness (log2 ratio) -1 0 1 2at 4292.197 kb on - strand, within IAI46_20310at 4292.204 kb on - strand, within IAI46_20310at 4292.204 kb on - strand, within IAI46_20310at 4292.236 kb on + strand, within IAI46_20310at 4292.236 kb on + strand, within IAI46_20310at 4292.237 kb on - strand, within IAI46_20310at 4292.237 kb on - strand, within IAI46_20310at 4292.247 kb on + strand, within IAI46_20310at 4292.247 kb on + strand, within IAI46_20310at 4292.247 kb on + strand, within IAI46_20310at 4292.342 kb on - strand, within IAI46_20310at 4292.444 kb on + strandat 4292.482 kb on + strandat 4292.494 kb on - strandat 4292.605 kb on + strandat 4292.606 kb on - strandat 4292.606 kb on - strandat 4292.613 kb on - strandat 4292.667 kb on - strandat 4292.667 kb on - strandat 4292.668 kb on + strandat 4292.668 kb on + strandat 4292.680 kb on + strandat 4292.978 kb on - strandat 4292.978 kb on - strandat 4292.987 kb on + strandat 4292.988 kb on - strandat 4292.988 kb on - strandat 4292.992 kb on - strandat 4293.047 kb on + strandat 4293.166 kb on - strandat 4293.172 kb on - strandat 4293.172 kb on - strandat 4293.238 kb on + strand, within IAI46_20315at 4293.238 kb on + strand, within IAI46_20315at 4293.249 kb on + strand, within IAI46_20315at 4293.249 kb on + strand, within IAI46_20315at 4293.263 kb on - strand, within IAI46_20315at 4293.263 kb on - strand, within IAI46_20315at 4293.405 kb on + strand, within IAI46_20315at 4293.479 kb on + strand, within IAI46_20315at 4293.479 kb on + strand, within IAI46_20315at 4293.490 kb on - strand, within IAI46_20315at 4293.492 kb on - strand, within IAI46_20315at 4293.538 kb on + strand, within IAI46_20315at 4293.539 kb on - strand, within IAI46_20315at 4293.539 kb on - strand, within IAI46_20315at 4293.686 kb on + strandat 4293.697 kb on - strandat 4293.718 kb on + strandat 4293.719 kb on - strandat 4293.719 kb on - strandat 4293.733 kb on - strandat 4293.768 kb on + strandat 4293.768 kb on + strandat 4293.768 kb on + strandat 4293.769 kb on - strandat 4293.769 kb on - strandat 4293.769 kb on - strandat 4293.769 kb on - strandat 4293.769 kb on - strandat 4293.769 kb on - strandat 4293.772 kb on + strandat 4293.772 kb on + strandat 4293.772 kb on + strandat 4293.773 kb on - strandat 4293.773 kb on - strandat 4293.855 kb on + strandat 4293.856 kb on - strandat 4293.856 kb on - strandat 4293.948 kb on + strandat 4293.949 kb on - strandat 4293.949 kb on - strandat 4293.977 kb on + strandat 4294.023 kb on + strandat 4294.024 kb on - strandat 4294.024 kb on - strandat 4294.024 kb on - strandat 4294.076 kb on + strandat 4294.099 kb on + strandat 4294.099 kb on + strandat 4294.099 kb on + strandat 4294.099 kb on + strandat 4294.099 kb on + strandat 4294.099 kb on + strandat 4294.103 kb on + strandat 4294.106 kb on + strandat 4294.107 kb on - strandat 4294.109 kb on + strandat 4294.146 kb on + strandat 4294.146 kb on + strandat 4294.146 kb on + strandat 4294.146 kb on + strandat 4294.146 kb on + strandat 4294.146 kb on + strandat 4294.147 kb on - strandat 4294.147 kb on - strandat 4294.147 kb on - strandat 4294.147 kb on - strandat 4294.170 kb on + strandat 4294.196 kb on + strandat 4294.197 kb on - strandat 4294.197 kb on - strandat 4294.229 kb on + strandat 4294.229 kb on + strandat 4294.230 kb on - strandat 4294.231 kb on + strandat 4294.449 kb on + strand, within IAI46_20320at 4294.450 kb on - strand, within IAI46_20320at 4294.525 kb on - strand, within IAI46_20320at 4294.525 kb on - strand, within IAI46_20320at 4294.542 kb on + strand, within IAI46_20320at 4294.542 kb on + strand, within IAI46_20320at 4294.584 kb on + strand, within IAI46_20320at 4294.584 kb on + strand, within IAI46_20320at 4294.584 kb on + strand, within IAI46_20320at 4294.584 kb on + strand, within IAI46_20320at 4294.584 kb on + strand, within IAI46_20320at 4294.585 kb on - strand, within IAI46_20320at 4294.585 kb on - strand, within IAI46_20320at 4294.630 kb on + strand, within IAI46_20320at 4294.631 kb on - strand, within IAI46_20320at 4294.636 kb on + strand, within IAI46_20320at 4294.637 kb on - strand, within IAI46_20320at 4294.680 kb on + strand, within IAI46_20320at 4294.680 kb on + strand, within IAI46_20320

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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4,292,197 - IAI46_20310 0.70 -0.7
4,292,204 - IAI46_20310 0.71 +0.0
4,292,204 - IAI46_20310 0.71 -1.3
4,292,236 + IAI46_20310 0.74 +0.5
4,292,236 + IAI46_20310 0.74 +0.3
4,292,237 - IAI46_20310 0.74 -0.3
4,292,237 - IAI46_20310 0.74 -0.4
4,292,247 + IAI46_20310 0.74 +0.2
4,292,247 + IAI46_20310 0.74 +0.1
4,292,247 + IAI46_20310 0.74 -0.1
4,292,342 - IAI46_20310 0.82 +2.1
4,292,444 + -0.3
4,292,482 + -0.4
4,292,494 - -0.5
4,292,605 + +1.4
4,292,606 - -0.2
4,292,606 - -1.5
4,292,613 - +0.6
4,292,667 - +0.8
4,292,667 - +0.1
4,292,668 + +0.1
4,292,668 + +1.7
4,292,680 + -0.6
4,292,978 - -0.5
4,292,978 - +0.9
4,292,987 + +0.3
4,292,988 - +0.2
4,292,988 - -0.3
4,292,992 - +0.2
4,293,047 + +0.5
4,293,166 - -0.4
4,293,172 - -0.2
4,293,172 - +0.8
4,293,238 + IAI46_20315 0.10 +0.5
4,293,238 + IAI46_20315 0.10 +0.2
4,293,249 + IAI46_20315 0.12 -0.9
4,293,249 + IAI46_20315 0.12 -0.5
4,293,263 - IAI46_20315 0.15 -0.4
4,293,263 - IAI46_20315 0.15 +0.5
4,293,405 + IAI46_20315 0.41 -0.3
4,293,479 + IAI46_20315 0.54 -0.5
4,293,479 + IAI46_20315 0.54 -0.0
4,293,490 - IAI46_20315 0.56 +0.5
4,293,492 - IAI46_20315 0.56 +0.0
4,293,538 + IAI46_20315 0.65 +0.2
4,293,539 - IAI46_20315 0.65 +0.5
4,293,539 - IAI46_20315 0.65 -0.4
4,293,686 + +0.2
4,293,697 - -0.0
4,293,718 + +0.5
4,293,719 - +1.1
4,293,719 - -0.1
4,293,733 - +1.0
4,293,768 + +0.7
4,293,768 + +1.0
4,293,768 + +0.0
4,293,769 - -0.9
4,293,769 - +0.4
4,293,769 - +0.1
4,293,769 - -1.5
4,293,769 - +1.2
4,293,769 - -0.2
4,293,772 + -0.3
4,293,772 + +1.0
4,293,772 + +0.6
4,293,773 - +0.7
4,293,773 - +0.3
4,293,855 + -1.1
4,293,856 - +0.9
4,293,856 - +0.5
4,293,948 + -0.2
4,293,949 - +0.6
4,293,949 - -0.5
4,293,977 + +0.5
4,294,023 + +0.9
4,294,024 - -0.2
4,294,024 - -0.6
4,294,024 - -0.8
4,294,076 + -1.7
4,294,099 + +0.1
4,294,099 + +0.8
4,294,099 + -0.7
4,294,099 + -0.1
4,294,099 + +2.1
4,294,099 + +0.4
4,294,103 + -0.3
4,294,106 + +2.3
4,294,107 - +0.6
4,294,109 + +0.1
4,294,146 + +0.4
4,294,146 + -0.7
4,294,146 + +1.1
4,294,146 + +0.3
4,294,146 + -0.6
4,294,146 + -0.0
4,294,147 - -0.5
4,294,147 - +2.1
4,294,147 - -0.7
4,294,147 - -1.0
4,294,170 + -0.9
4,294,196 + +0.5
4,294,197 - +0.3
4,294,197 - +0.4
4,294,229 + +1.0
4,294,229 + -0.5
4,294,230 - +0.0
4,294,231 + -0.4
4,294,449 + IAI46_20320 0.23 +0.2
4,294,450 - IAI46_20320 0.23 -0.2
4,294,525 - IAI46_20320 0.28 +0.0
4,294,525 - IAI46_20320 0.28 +0.1
4,294,542 + IAI46_20320 0.29 -0.8
4,294,542 + IAI46_20320 0.29 +0.3
4,294,584 + IAI46_20320 0.32 +1.1
4,294,584 + IAI46_20320 0.32 -0.1
4,294,584 + IAI46_20320 0.32 -0.5
4,294,584 + IAI46_20320 0.32 +0.5
4,294,584 + IAI46_20320 0.32 +0.4
4,294,585 - IAI46_20320 0.33 -0.5
4,294,585 - IAI46_20320 0.33 +1.4
4,294,630 + IAI46_20320 0.36 -0.4
4,294,631 - IAI46_20320 0.36 -0.3
4,294,636 + IAI46_20320 0.36 +0.3
4,294,637 - IAI46_20320 0.36 +0.5
4,294,680 + IAI46_20320 0.39 +0.8
4,294,680 + IAI46_20320 0.39 +0.2

Or see this region's nucleotide sequence