Strain Fitness in Serratia liquefaciens MT49 around IAI46_19275

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_19270 and IAI46_19275 are separated by 138 nucleotidesIAI46_19275 and IAI46_19280 are separated by 47 nucleotides IAI46_19270: IAI46_19270 - histidine--tRNA ligase, at 4,067,297 to 4,068,571 _19270 IAI46_19275: IAI46_19275 - flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase, at 4,068,710 to 4,069,831 _19275 IAI46_19280: IAI46_19280 - cytoskeleton protein RodZ, at 4,069,879 to 4,070,856 _19280 Position (kb) 4068 4069 4070Strain fitness (log2 ratio) -1 0 1 2at 4068.612 kb on - strandat 4068.614 kb on - strandat 4068.614 kb on - strandat 4068.670 kb on - strandat 4068.670 kb on - strandat 4068.702 kb on + strandat 4068.704 kb on + strandat 4068.704 kb on + strandat 4069.934 kb on - strandat 4069.967 kb on - strandat 4070.052 kb on - strand, within IAI46_19280at 4070.369 kb on - strand, within IAI46_19280at 4070.655 kb on - strand, within IAI46_19280at 4070.667 kb on - strand, within IAI46_19280at 4070.667 kb on - strand, within IAI46_19280

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
remove
4,068,612 - +0.5
4,068,614 - -0.4
4,068,614 - +2.4
4,068,670 - -0.2
4,068,670 - -0.3
4,068,702 + -1.5
4,068,704 + -0.1
4,068,704 + -0.1
4,069,934 - +1.3
4,069,967 - +0.1
4,070,052 - IAI46_19280 0.18 +0.8
4,070,369 - IAI46_19280 0.50 +0.4
4,070,655 - IAI46_19280 0.79 -0.8
4,070,667 - IAI46_19280 0.81 +0.7
4,070,667 - IAI46_19280 0.81 +0.6

Or see this region's nucleotide sequence