Strain Fitness in Serratia liquefaciens MT49 around IAI46_16025

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_16015 and IAI46_16020 overlap by 1 nucleotidesIAI46_16020 and IAI46_16025 are separated by 28 nucleotidesIAI46_16025 and IAI46_16030 are separated by 84 nucleotides IAI46_16015: IAI46_16015 - chemotaxis response regulator protein-glutamate methylesterase, at 3,358,193 to 3,359,242 _16015 IAI46_16020: IAI46_16020 - protein-glutamate O-methyltransferase CheR, at 3,359,242 to 3,360,114 _16020 IAI46_16025: IAI46_16025 - Tar ligand binding domain-containing protein, at 3,360,143 to 3,361,768 _16025 IAI46_16030: IAI46_16030 - Tar ligand binding domain-containing protein, at 3,361,853 to 3,363,523 _16030 Position (kb) 3360 3361 3362Strain fitness (log2 ratio) -2 -1 0 1at 3359.217 kb on - strandat 3359.225 kb on + strandat 3359.243 kb on + strandat 3359.403 kb on - strand, within IAI46_16020at 3359.403 kb on - strand, within IAI46_16020at 3359.556 kb on - strand, within IAI46_16020at 3359.584 kb on - strand, within IAI46_16020at 3359.603 kb on + strand, within IAI46_16020at 3359.696 kb on - strand, within IAI46_16020at 3359.696 kb on - strand, within IAI46_16020at 3359.696 kb on - strand, within IAI46_16020at 3359.749 kb on + strand, within IAI46_16020at 3359.874 kb on + strand, within IAI46_16020at 3359.952 kb on + strand, within IAI46_16020at 3359.954 kb on + strand, within IAI46_16020at 3359.955 kb on - strand, within IAI46_16020at 3360.173 kb on + strandat 3360.220 kb on + strandat 3360.221 kb on - strandat 3360.240 kb on - strandat 3360.568 kb on + strand, within IAI46_16025at 3361.050 kb on + strand, within IAI46_16025at 3361.108 kb on + strand, within IAI46_16025at 3361.132 kb on + strand, within IAI46_16025at 3361.133 kb on - strand, within IAI46_16025at 3361.259 kb on + strand, within IAI46_16025at 3361.272 kb on + strand, within IAI46_16025at 3361.470 kb on + strand, within IAI46_16025at 3361.574 kb on - strand, within IAI46_16025at 3361.769 kb on + strandat 3361.804 kb on - strandat 3362.236 kb on + strand, within IAI46_16030at 3362.749 kb on + strand, within IAI46_16030at 3362.749 kb on + strand, within IAI46_16030

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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3,359,217 - -0.7
3,359,225 + +0.2
3,359,243 + +0.8
3,359,403 - IAI46_16020 0.18 +0.4
3,359,403 - IAI46_16020 0.18 +1.1
3,359,556 - IAI46_16020 0.36 -0.0
3,359,584 - IAI46_16020 0.39 +0.1
3,359,603 + IAI46_16020 0.41 -0.2
3,359,696 - IAI46_16020 0.52 +1.7
3,359,696 - IAI46_16020 0.52 -0.4
3,359,696 - IAI46_16020 0.52 +0.9
3,359,749 + IAI46_16020 0.58 -1.0
3,359,874 + IAI46_16020 0.72 -0.6
3,359,952 + IAI46_16020 0.81 +0.4
3,359,954 + IAI46_16020 0.82 -1.3
3,359,955 - IAI46_16020 0.82 +0.2
3,360,173 + -0.3
3,360,220 + -0.1
3,360,221 - +0.4
3,360,240 - +0.9
3,360,568 + IAI46_16025 0.26 -0.2
3,361,050 + IAI46_16025 0.56 -2.1
3,361,108 + IAI46_16025 0.59 +0.5
3,361,132 + IAI46_16025 0.61 +0.5
3,361,133 - IAI46_16025 0.61 +0.0
3,361,259 + IAI46_16025 0.69 +0.9
3,361,272 + IAI46_16025 0.69 -1.1
3,361,470 + IAI46_16025 0.82 +0.2
3,361,574 - IAI46_16025 0.88 +0.8
3,361,769 + -1.7
3,361,804 - -0.3
3,362,236 + IAI46_16030 0.23 -0.0
3,362,749 + IAI46_16030 0.54 +0.6
3,362,749 + IAI46_16030 0.54 +0.6

Or see this region's nucleotide sequence