Strain Fitness in Serratia liquefaciens MT49 around IAI46_16015

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_16005 and IAI46_16010 are separated by 12 nucleotidesIAI46_16010 and IAI46_16015 are separated by 223 nucleotidesIAI46_16015 and IAI46_16020 overlap by 1 nucleotidesIAI46_16020 and IAI46_16025 are separated by 28 nucleotides IAI46_16005: IAI46_16005 - protein phosphatase CheZ, at 3,356,923 to 3,357,567 _16005 IAI46_16010: IAI46_16010 - chemotaxis response regulator CheY, at 3,357,580 to 3,357,969 _16010 IAI46_16015: IAI46_16015 - chemotaxis response regulator protein-glutamate methylesterase, at 3,358,193 to 3,359,242 _16015 IAI46_16020: IAI46_16020 - protein-glutamate O-methyltransferase CheR, at 3,359,242 to 3,360,114 _16020 IAI46_16025: IAI46_16025 - Tar ligand binding domain-containing protein, at 3,360,143 to 3,361,768 _16025 Position (kb) 3358 3359 3360Strain fitness (log2 ratio) -2 -1 0 1 2at 3357.196 kb on - strand, within IAI46_16005at 3357.398 kb on + strand, within IAI46_16005at 3357.399 kb on - strand, within IAI46_16005at 3357.581 kb on + strandat 3357.582 kb on - strandat 3357.582 kb on - strandat 3357.872 kb on - strand, within IAI46_16010at 3357.921 kb on + strand, within IAI46_16010at 3357.961 kb on - strandat 3357.970 kb on - strandat 3357.970 kb on - strandat 3357.971 kb on + strandat 3357.971 kb on + strandat 3357.971 kb on + strandat 3357.971 kb on + strandat 3357.971 kb on + strandat 3357.971 kb on + strandat 3357.971 kb on + strandat 3357.971 kb on + strandat 3357.972 kb on - strandat 3357.972 kb on - strandat 3357.972 kb on - strandat 3357.972 kb on - strandat 3357.972 kb on - strandat 3357.972 kb on - strandat 3357.973 kb on + strandat 3357.974 kb on - strandat 3358.028 kb on + strandat 3358.029 kb on - strandat 3358.038 kb on + strandat 3358.038 kb on + strandat 3358.039 kb on - strandat 3358.039 kb on - strandat 3358.040 kb on + strandat 3358.042 kb on + strandat 3358.042 kb on + strandat 3358.042 kb on + strandat 3358.042 kb on + strandat 3358.043 kb on - strandat 3358.043 kb on - strandat 3358.099 kb on - strandat 3358.106 kb on + strandat 3358.106 kb on + strandat 3358.178 kb on - strandat 3358.178 kb on - strandat 3358.181 kb on + strandat 3358.182 kb on - strandat 3358.182 kb on - strandat 3358.182 kb on - strandat 3358.188 kb on - strandat 3358.198 kb on + strandat 3358.199 kb on - strandat 3358.343 kb on - strand, within IAI46_16015at 3358.345 kb on - strand, within IAI46_16015at 3358.434 kb on + strand, within IAI46_16015at 3358.516 kb on - strand, within IAI46_16015at 3358.566 kb on + strand, within IAI46_16015at 3358.566 kb on + strand, within IAI46_16015at 3358.567 kb on - strand, within IAI46_16015at 3358.673 kb on - strand, within IAI46_16015at 3358.673 kb on - strand, within IAI46_16015at 3358.795 kb on + strand, within IAI46_16015at 3358.887 kb on + strand, within IAI46_16015at 3359.217 kb on - strandat 3359.225 kb on + strandat 3359.243 kb on + strandat 3359.403 kb on - strand, within IAI46_16020at 3359.403 kb on - strand, within IAI46_16020at 3359.556 kb on - strand, within IAI46_16020at 3359.584 kb on - strand, within IAI46_16020at 3359.603 kb on + strand, within IAI46_16020at 3359.696 kb on - strand, within IAI46_16020at 3359.696 kb on - strand, within IAI46_16020at 3359.696 kb on - strand, within IAI46_16020at 3359.749 kb on + strand, within IAI46_16020at 3359.874 kb on + strand, within IAI46_16020at 3359.952 kb on + strand, within IAI46_16020at 3359.954 kb on + strand, within IAI46_16020at 3359.955 kb on - strand, within IAI46_16020at 3360.173 kb on + strandat 3360.220 kb on + strandat 3360.221 kb on - strandat 3360.240 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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3,357,196 - IAI46_16005 0.42 +1.0
3,357,398 + IAI46_16005 0.74 -1.3
3,357,399 - IAI46_16005 0.74 +0.6
3,357,581 + -0.8
3,357,582 - -0.1
3,357,582 - -0.3
3,357,872 - IAI46_16010 0.75 +0.4
3,357,921 + IAI46_16010 0.87 -0.7
3,357,961 - -1.1
3,357,970 - +0.8
3,357,970 - +1.9
3,357,971 + +1.1
3,357,971 + -0.6
3,357,971 + +0.2
3,357,971 + -0.8
3,357,971 + -0.2
3,357,971 + -0.7
3,357,971 + +1.2
3,357,971 + -0.3
3,357,972 - +0.2
3,357,972 - +0.4
3,357,972 - -0.1
3,357,972 - +0.5
3,357,972 - +0.6
3,357,972 - +0.6
3,357,973 + -0.3
3,357,974 - +0.1
3,358,028 + +1.0
3,358,029 - +0.3
3,358,038 + -1.7
3,358,038 + +0.5
3,358,039 - -0.6
3,358,039 - +0.1
3,358,040 + +0.1
3,358,042 + +0.3
3,358,042 + +0.5
3,358,042 + -0.2
3,358,042 + -0.3
3,358,043 - +0.4
3,358,043 - +0.1
3,358,099 - +0.2
3,358,106 + -0.8
3,358,106 + -1.0
3,358,178 - +1.8
3,358,178 - -1.2
3,358,181 + +0.3
3,358,182 - -0.2
3,358,182 - -0.7
3,358,182 - +0.3
3,358,188 - +0.6
3,358,198 + +0.3
3,358,199 - -0.5
3,358,343 - IAI46_16015 0.14 -0.3
3,358,345 - IAI46_16015 0.14 +1.0
3,358,434 + IAI46_16015 0.23 +0.3
3,358,516 - IAI46_16015 0.31 -1.8
3,358,566 + IAI46_16015 0.36 -2.6
3,358,566 + IAI46_16015 0.36 +1.4
3,358,567 - IAI46_16015 0.36 -0.2
3,358,673 - IAI46_16015 0.46 +0.5
3,358,673 - IAI46_16015 0.46 +0.3
3,358,795 + IAI46_16015 0.57 +0.2
3,358,887 + IAI46_16015 0.66 -0.1
3,359,217 - -0.7
3,359,225 + +0.2
3,359,243 + +0.8
3,359,403 - IAI46_16020 0.18 +0.4
3,359,403 - IAI46_16020 0.18 +1.1
3,359,556 - IAI46_16020 0.36 -0.0
3,359,584 - IAI46_16020 0.39 +0.1
3,359,603 + IAI46_16020 0.41 -0.2
3,359,696 - IAI46_16020 0.52 +1.7
3,359,696 - IAI46_16020 0.52 -0.4
3,359,696 - IAI46_16020 0.52 +0.9
3,359,749 + IAI46_16020 0.58 -1.0
3,359,874 + IAI46_16020 0.72 -0.6
3,359,952 + IAI46_16020 0.81 +0.4
3,359,954 + IAI46_16020 0.82 -1.3
3,359,955 - IAI46_16020 0.82 +0.2
3,360,173 + -0.3
3,360,220 + -0.1
3,360,221 - +0.4
3,360,240 - +0.9

Or see this region's nucleotide sequence