Strain Fitness in Serratia liquefaciens MT49 around IAI46_15395

Experiment: Uranyl Acetate Dihydrate 200 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_15385 and IAI46_15390 overlap by 4 nucleotidesIAI46_15390 and IAI46_15395 are separated by 2 nucleotidesIAI46_15395 and IAI46_15400 are separated by 48 nucleotides IAI46_15385: IAI46_15385 - ABC transporter ATP-binding protein, at 3,221,229 to 3,222,215 _15385 IAI46_15390: IAI46_15390 - ABC transporter permease, at 3,222,212 to 3,223,162 _15390 IAI46_15395: IAI46_15395 - ABC transporter permease, at 3,223,165 to 3,224,121 _15395 IAI46_15400: IAI46_15400 - ABC transporter substrate-binding protein, at 3,224,170 to 3,225,858 _15400 Position (kb) 3223 3224 3225Strain fitness (log2 ratio) -2 -1 0 1 2at 3222.414 kb on + strand, within IAI46_15390at 3222.415 kb on - strand, within IAI46_15390at 3222.415 kb on - strand, within IAI46_15390at 3222.511 kb on + strand, within IAI46_15390at 3222.646 kb on - strand, within IAI46_15390at 3222.854 kb on - strand, within IAI46_15390at 3222.877 kb on + strand, within IAI46_15390at 3222.879 kb on + strand, within IAI46_15390at 3222.940 kb on + strand, within IAI46_15390at 3223.091 kb on + strandat 3223.091 kb on + strandat 3223.091 kb on + strandat 3223.162 kb on + strandat 3223.162 kb on + strandat 3223.166 kb on + strandat 3223.167 kb on - strandat 3223.167 kb on - strandat 3223.167 kb on - strandat 3223.193 kb on + strandat 3223.194 kb on - strandat 3223.475 kb on + strand, within IAI46_15395at 3223.476 kb on - strand, within IAI46_15395at 3223.476 kb on - strand, within IAI46_15395at 3223.847 kb on + strand, within IAI46_15395at 3223.864 kb on - strand, within IAI46_15395at 3223.880 kb on + strand, within IAI46_15395at 3223.964 kb on + strand, within IAI46_15395at 3223.964 kb on + strand, within IAI46_15395at 3224.216 kb on + strandat 3224.218 kb on + strandat 3224.219 kb on - strandat 3224.219 kb on - strandat 3224.315 kb on + strandat 3224.327 kb on + strandat 3224.327 kb on + strandat 3224.328 kb on - strandat 3224.337 kb on + strandat 3224.401 kb on - strand, within IAI46_15400at 3224.494 kb on - strand, within IAI46_15400at 3224.567 kb on + strand, within IAI46_15400at 3224.567 kb on + strand, within IAI46_15400at 3224.567 kb on + strand, within IAI46_15400at 3224.567 kb on + strand, within IAI46_15400at 3224.571 kb on + strand, within IAI46_15400at 3224.723 kb on + strand, within IAI46_15400at 3224.724 kb on - strand, within IAI46_15400at 3224.729 kb on + strand, within IAI46_15400at 3224.807 kb on + strand, within IAI46_15400at 3224.889 kb on + strand, within IAI46_15400at 3224.913 kb on - strand, within IAI46_15400at 3225.000 kb on - strand, within IAI46_15400at 3225.037 kb on - strand, within IAI46_15400at 3225.037 kb on - strand, within IAI46_15400at 3225.061 kb on - strand, within IAI46_15400

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Per-strain Table

Position Strand Gene LocusTag Fraction Uranyl Acetate Dihydrate 200 uM, aerobic
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3,222,414 + IAI46_15390 0.21 +1.0
3,222,415 - IAI46_15390 0.21 +0.5
3,222,415 - IAI46_15390 0.21 -0.8
3,222,511 + IAI46_15390 0.31 +0.7
3,222,646 - IAI46_15390 0.46 -1.3
3,222,854 - IAI46_15390 0.68 +0.2
3,222,877 + IAI46_15390 0.70 -2.2
3,222,879 + IAI46_15390 0.70 +0.1
3,222,940 + IAI46_15390 0.77 +0.4
3,223,091 + +0.3
3,223,091 + -0.1
3,223,091 + +1.2
3,223,162 + -0.9
3,223,162 + -0.1
3,223,166 + +1.2
3,223,167 - -0.8
3,223,167 - -0.5
3,223,167 - +0.4
3,223,193 + -1.3
3,223,194 - +0.3
3,223,475 + IAI46_15395 0.32 +0.9
3,223,476 - IAI46_15395 0.32 -0.1
3,223,476 - IAI46_15395 0.32 +0.5
3,223,847 + IAI46_15395 0.71 +0.4
3,223,864 - IAI46_15395 0.73 -0.1
3,223,880 + IAI46_15395 0.75 +0.1
3,223,964 + IAI46_15395 0.83 +1.2
3,223,964 + IAI46_15395 0.83 +0.7
3,224,216 + +1.5
3,224,218 + +1.4
3,224,219 - +0.7
3,224,219 - +0.7
3,224,315 + -0.1
3,224,327 + -0.7
3,224,327 + +1.1
3,224,328 - +0.3
3,224,337 + +0.8
3,224,401 - IAI46_15400 0.14 +0.5
3,224,494 - IAI46_15400 0.19 +0.2
3,224,567 + IAI46_15400 0.24 +0.3
3,224,567 + IAI46_15400 0.24 -1.0
3,224,567 + IAI46_15400 0.24 -1.0
3,224,567 + IAI46_15400 0.24 -0.9
3,224,571 + IAI46_15400 0.24 -0.9
3,224,723 + IAI46_15400 0.33 +2.0
3,224,724 - IAI46_15400 0.33 -0.3
3,224,729 + IAI46_15400 0.33 +0.8
3,224,807 + IAI46_15400 0.38 +0.5
3,224,889 + IAI46_15400 0.43 +0.6
3,224,913 - IAI46_15400 0.44 +1.5
3,225,000 - IAI46_15400 0.49 -0.4
3,225,037 - IAI46_15400 0.51 +1.5
3,225,037 - IAI46_15400 0.51 -0.1
3,225,061 - IAI46_15400 0.53 -0.3

Or see this region's nucleotide sequence